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Mutant Information

Mutant Name	FN2655-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2655-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8591537 C-T Hetero INTERGENIC
SBS Chr1 8591538 G-T Hetero INTERGENIC
SBS Chr1 13707993 G-C Hetero INTRON
SBS Chr1 17252619 C-A Hetero INTERGENIC
SBS Chr2 3371755 G-A Hetero INTRON
SBS Chr2 5412225 T-C Hetero SPLICE_SITE_REGION
SBS Chr2 29287945 G-C Hetero INTRON
SBS Chr2 29668251 T-G Hetero INTERGENIC
SBS Chr2 33289319 G-A Homo UTR_5_PRIME
SBS Chr3 3031235 C-A Hetero INTERGENIC
SBS Chr3 4094999 C-T Hetero INTERGENIC
SBS Chr3 18469844 G-A Hetero INTERGENIC
SBS Chr3 20899960 C-T Hetero INTERGENIC
SBS Chr3 30543222 G-A Hetero INTERGENIC
SBS Chr3 31381979 C-A Hetero INTERGENIC
SBS Chr4 5272479 A-G Hetero INTERGENIC
SBS Chr4 7023289 T-A Hetero INTERGENIC
SBS Chr4 19123107 A-C Hetero INTERGENIC
SBS Chr5 1855328 C-T Hetero INTERGENIC
SBS Chr5 4988013 G-T Hetero INTERGENIC
SBS Chr5 8958649 A-T Homo NON_SYNONYMOUS_CODING OsKitaake05g084400
SBS Chr5 15510191 C-A Hetero INTERGENIC
SBS Chr5 22810859 C-T Hetero INTERGENIC
SBS Chr5 25833543 A-T Hetero INTERGENIC
SBS Chr6 16505069 T-A Hetero INTERGENIC
SBS Chr6 18077449 C-T Hetero INTERGENIC
SBS Chr6 29725988 A-G Hetero INTERGENIC
SBS Chr7 3549462 C-G Hetero INTRON
SBS Chr7 6890313 G-A Hetero INTERGENIC
SBS Chr7 15134547 A-G Hetero INTERGENIC
SBS Chr7 25468823 T-C Hetero INTERGENIC
SBS Chr7 29302877 T-A Hetero INTERGENIC
SBS Chr8 6534160 G-A Hetero INTERGENIC
SBS Chr8 27910825 C-T Hetero INTRON
SBS Chr9 505008 T-A Hetero INTERGENIC
SBS Chr9 2390385 G-A Hetero INTERGENIC
SBS Chr10 10967844 G-A Hetero INTERGENIC
SBS Chr10 17634634 G-A Hetero INTERGENIC
SBS Chr10 19094538 C-T Hetero INTRON
SBS Chr10 23880358 A-G Hetero START_GAINED
SBS Chr11 10205807 T-C Homo INTERGENIC
SBS Chr11 15425023 G-T Hetero INTERGENIC
SBS Chr11 19159928 C-A Hetero INTERGENIC
SBS Chr11 25064104 C-T Hetero UTR_3_PRIME
SBS Chr11 26700626 G-T Hetero INTERGENIC
SBS Chr12 319561 C-G Hetero SYNONYMOUS_CODING
SBS Chr12 4722783 G-T Hetero INTERGENIC
SBS Chr12 8537541 G-C Hetero INTERGENIC
SBS Chr12 14806742 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g117600
SBS Chr12 21059482 C-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2762241 2762242 1
Deletion Chr1 4194235 4194238 3
Deletion Chr8 4499480 4499486 6
Deletion Chr11 5591560 5591571 11
Deletion Chr5 12654088 12654092 4
Deletion Chr9 13798133 13798144 11
Deletion Chr11 14616141 14616142 1
Deletion Chr2 18490871 18490875 4
Deletion Chr7 24844001 24869000 24999 6
Deletion Chr1 26737835 26737837 2
Deletion Chr6 29707920 29707925 5
Deletion Chr1 31804518 31804523 5 OsKitaake01g319700
Deletion Chr1 32393711 32393712 1
Deletion Chr2 36912793 36912794 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29918464 29918467 2
Insertion Chr7 1275866 1275869 2
Insertion Chr8 28109940 28109943 2
Insertion Chr9 6367279 6367282 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 9185833 9488309
Inversion Chr1 9185835 9488330

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 15974339 Chr6 16500402
Translocation Chr8 15974350 Chr6 16508245
Translocation Chr4 32689731 Chr3 34651594 2
Translocation Chr4 32693280 Chr3 34651589 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8591537	C-T	Hetero	INTERGENIC
SBS	Chr1	8591538	G-T	Hetero	INTERGENIC
SBS	Chr1	13707993	G-C	Hetero	INTRON
SBS	Chr1	17252619	C-A	Hetero	INTERGENIC
SBS	Chr2	3371755	G-A	Hetero	INTRON
SBS	Chr2	5412225	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr2	29287945	G-C	Hetero	INTRON
SBS	Chr2	29668251	T-G	Hetero	INTERGENIC
SBS	Chr2	33289319	G-A	Homo	UTR_5_PRIME
SBS	Chr3	3031235	C-A	Hetero	INTERGENIC
SBS	Chr3	4094999	C-T	Hetero	INTERGENIC
SBS	Chr3	18469844	G-A	Hetero	INTERGENIC
SBS	Chr3	20899960	C-T	Hetero	INTERGENIC
SBS	Chr3	30543222	G-A	Hetero	INTERGENIC
SBS	Chr3	31381979	C-A	Hetero	INTERGENIC
SBS	Chr4	5272479	A-G	Hetero	INTERGENIC
SBS	Chr4	7023289	T-A	Hetero	INTERGENIC
SBS	Chr4	19123107	A-C	Hetero	INTERGENIC
SBS	Chr5	1855328	C-T	Hetero	INTERGENIC
SBS	Chr5	4988013	G-T	Hetero	INTERGENIC
SBS	Chr5	8958649	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g084400
SBS	Chr5	15510191	C-A	Hetero	INTERGENIC
SBS	Chr5	22810859	C-T	Hetero	INTERGENIC
SBS	Chr5	25833543	A-T	Hetero	INTERGENIC
SBS	Chr6	16505069	T-A	Hetero	INTERGENIC
SBS	Chr6	18077449	C-T	Hetero	INTERGENIC
SBS	Chr6	29725988	A-G	Hetero	INTERGENIC
SBS	Chr7	3549462	C-G	Hetero	INTRON
SBS	Chr7	6890313	G-A	Hetero	INTERGENIC
SBS	Chr7	15134547	A-G	Hetero	INTERGENIC
SBS	Chr7	25468823	T-C	Hetero	INTERGENIC
SBS	Chr7	29302877	T-A	Hetero	INTERGENIC
SBS	Chr8	6534160	G-A	Hetero	INTERGENIC
SBS	Chr8	27910825	C-T	Hetero	INTRON
SBS	Chr9	505008	T-A	Hetero	INTERGENIC
SBS	Chr9	2390385	G-A	Hetero	INTERGENIC
SBS	Chr10	10967844	G-A	Hetero	INTERGENIC
SBS	Chr10	17634634	G-A	Hetero	INTERGENIC
SBS	Chr10	19094538	C-T	Hetero	INTRON
SBS	Chr10	23880358	A-G	Hetero	START_GAINED
SBS	Chr11	10205807	T-C	Homo	INTERGENIC
SBS	Chr11	15425023	G-T	Hetero	INTERGENIC
SBS	Chr11	19159928	C-A	Hetero	INTERGENIC
SBS	Chr11	25064104	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	26700626	G-T	Hetero	INTERGENIC
SBS	Chr12	319561	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	4722783	G-T	Hetero	INTERGENIC
SBS	Chr12	8537541	G-C	Hetero	INTERGENIC
SBS	Chr12	14806742	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g117600
SBS	Chr12	21059482	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2762241	2762242	1
Deletion	Chr1	4194235	4194238	3
Deletion	Chr8	4499480	4499486	6
Deletion	Chr11	5591560	5591571	11
Deletion	Chr5	12654088	12654092	4
Deletion	Chr9	13798133	13798144	11
Deletion	Chr11	14616141	14616142	1
Deletion	Chr2	18490871	18490875	4
Deletion	Chr7	24844001	24869000	24999	6
Deletion	Chr1	26737835	26737837	2
Deletion	Chr6	29707920	29707925	5
Deletion	Chr1	31804518	31804523	5	OsKitaake01g319700
Deletion	Chr1	32393711	32393712	1
Deletion	Chr2	36912793	36912794	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9185833	9488309
Inversion	Chr1	9185835	9488330

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes