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Mutant Information

Mutant Name	FN2656-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2656-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4726503 G-A Hetero INTERGENIC
SBS Chr2 9673792 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 22281182 T-G Hetero INTRON
SBS Chr2 29185413 T-C Hetero INTERGENIC
SBS Chr3 6339061 A-T Homo INTERGENIC
SBS Chr3 17341605 G-A Homo INTRON
SBS Chr3 17341606 A-T Homo INTRON
SBS Chr3 31247131 G-C Homo UTR_3_PRIME
SBS Chr3 35854997 A-G Hetero INTERGENIC
SBS Chr3 36518630 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g406000
SBS Chr3 36965367 A-G Hetero INTERGENIC
SBS Chr4 10044488 C-T Hetero INTERGENIC
SBS Chr4 35604134 G-T Homo INTERGENIC
SBS Chr5 11475965 G-T Homo INTERGENIC
SBS Chr5 12964597 C-T Hetero INTERGENIC
SBS Chr5 17730183 C-G Homo INTERGENIC
SBS Chr5 25591693 G-A Hetero INTERGENIC
SBS Chr6 10728326 G-A Hetero INTERGENIC
SBS Chr6 11396865 C-T Hetero INTERGENIC
SBS Chr6 17914933 A-T Hetero INTERGENIC
SBS Chr6 18726494 T-A Hetero SYNONYMOUS_CODING
SBS Chr6 22784787 C-A Hetero INTERGENIC
SBS Chr6 22878105 C-A Hetero INTERGENIC
SBS Chr6 26117996 C-T Hetero INTERGENIC
SBS Chr6 26117999 A-T Hetero INTERGENIC
SBS Chr6 26337931 A-T Hetero INTERGENIC
SBS Chr7 10047379 G-A Hetero INTERGENIC
SBS Chr7 12375045 C-T Hetero INTERGENIC
SBS Chr7 15194990 C-T Hetero INTERGENIC
SBS Chr7 15219076 T-C Hetero INTERGENIC
SBS Chr7 28142909 A-G Hetero INTERGENIC
SBS Chr8 2140831 C-T Hetero SPLICE_SITE_DONOR OsKitaake08g025500
SBS Chr8 7743502 T-C Homo INTERGENIC
SBS Chr9 1288504 C-T Hetero INTERGENIC
SBS Chr9 2280238 A-T Hetero INTRON
SBS Chr9 2280241 T-C Hetero INTRON
SBS Chr9 15337782 T-A Hetero INTERGENIC
SBS Chr9 17182165 G-C Hetero INTERGENIC
SBS Chr9 20410653 A-C Hetero INTERGENIC
SBS Chr10 7282239 G-A Hetero INTERGENIC
SBS Chr10 15969527 T-C Hetero INTRON
SBS Chr10 17311097 C-T Homo INTERGENIC
SBS Chr11 10194731 C-T Hetero INTERGENIC
SBS Chr11 15550979 C-T Homo INTERGENIC
SBS Chr11 16998377 G-A Homo INTERGENIC
SBS Chr11 19829520 C-A Hetero INTERGENIC
SBS Chr11 26067682 C-T Hetero INTERGENIC
SBS Chr11 26743673 C-T Hetero INTERGENIC
SBS Chr11 27916785 T-A Homo INTERGENIC
SBS Chr11 28473730 T-A Homo INTERGENIC
SBS Chr11 28473731 G-T Homo INTERGENIC
SBS Chr11 28473735 C-T Homo INTERGENIC
SBS Chr11 29012474 A-T Hetero INTRON
SBS Chr12 11133746 G-C Hetero INTERGENIC
SBS Chr12 12781763 C-A Homo INTERGENIC
SBS Chr12 18751497 G-A Hetero INTERGENIC
SBS Chr12 26019993 G-A Hetero INTRON
SBS Chr12 26780874 A-G Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 15001 281000 265999 40
Deletion Chr11 564310 564323 13
Deletion Chr1 1196638 1196649 11
Deletion Chr11 1266612 1266622 10
Deletion Chr9 1502130 1502145 15
Deletion Chr12 2471714 2471731 17
Deletion Chr11 2512862 2512866 4
Deletion Chr9 2836777 2836780 3
Deletion Chr12 4004762 4004765 3
Deletion Chr7 4057058 4057072 14
Deletion Chr10 9336312 9336313 1
Deletion Chr2 10266413 10266415 2
Deletion Chr1 10348207 10348211 4
Deletion Chr5 11193225 11193238 13
Deletion Chr6 12664842 12664843 1
Deletion Chr6 13452655 13452656 1
Deletion Chr10 20232375 20232377 2
Deletion Chr5 20463450 20463462 12
Deletion Chr2 20521328 20521334 6 OsKitaake02g199600
Deletion Chr3 21262042 21262043 1
Deletion Chr5 23436483 23436489 6
Deletion Chr11 24771349 24771366 17
Deletion Chr11 28382289 28382294 5
Deletion Chr7 28821800 28821810 10 OsKitaake07g274900
Deletion Chr1 30441412 30441413 1
Deletion Chr4 31524824 31524826 2 OsKitaake04g248000
Deletion Chr3 32800881 32800885 4
Deletion Chr4 33351354 33351355 1
Deletion Chr3 36554721 36554723 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26340394 26340397 2
Insertion Chr2 4471064 4471067 2
Insertion Chr3 23801118 23801121 2
Insertion Chr5 18744668 18744671 2
Insertion Chr8 11568750 11568753 2
Insertion Chr9 5970681 5970684 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 3436490 3466940
Inversion Chr9 3436664 3467671

Translocations: 12

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 194292 Chr7 4409778 OsKitaake08g002700
Translocation Chr3 278448 Chr2 30390303
Translocation Chr3 278453 Chr2 30390307
Translocation Chr8 438146 Chr7 4409768 OsKitaake08g006500
Translocation Chr12 1898731 Chr5 24877558
Translocation Chr12 1898737 Chr5 24877406
Translocation Chr9 3466940 Chr8 22656270 OsKitaake08g173800
Translocation Chr9 3467664 Chr8 22656285 OsKitaake08g173800
Translocation Chr8 14733371 Chr1 30756675
Translocation Chr8 14733372 Chr1 30755744
Translocation Chr2 22909640 Chr1 34679910 OsKitaake01g364600
Translocation Chr2 22909646 Chr1 34679273 OsKitaake01g364600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4726503	G-A	Hetero	INTERGENIC
SBS	Chr2	9673792	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22281182	T-G	Hetero	INTRON
SBS	Chr2	29185413	T-C	Hetero	INTERGENIC
SBS	Chr3	6339061	A-T	Homo	INTERGENIC
SBS	Chr3	17341605	G-A	Homo	INTRON
SBS	Chr3	17341606	A-T	Homo	INTRON
SBS	Chr3	31247131	G-C	Homo	UTR_3_PRIME
SBS	Chr3	35854997	A-G	Hetero	INTERGENIC
SBS	Chr3	36518630	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g406000
SBS	Chr3	36965367	A-G	Hetero	INTERGENIC
SBS	Chr4	10044488	C-T	Hetero	INTERGENIC
SBS	Chr4	35604134	G-T	Homo	INTERGENIC
SBS	Chr5	11475965	G-T	Homo	INTERGENIC
SBS	Chr5	12964597	C-T	Hetero	INTERGENIC
SBS	Chr5	17730183	C-G	Homo	INTERGENIC
SBS	Chr5	25591693	G-A	Hetero	INTERGENIC
SBS	Chr6	10728326	G-A	Hetero	INTERGENIC
SBS	Chr6	11396865	C-T	Hetero	INTERGENIC
SBS	Chr6	17914933	A-T	Hetero	INTERGENIC
SBS	Chr6	18726494	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	22784787	C-A	Hetero	INTERGENIC
SBS	Chr6	22878105	C-A	Hetero	INTERGENIC
SBS	Chr6	26117996	C-T	Hetero	INTERGENIC
SBS	Chr6	26117999	A-T	Hetero	INTERGENIC
SBS	Chr6	26337931	A-T	Hetero	INTERGENIC
SBS	Chr7	10047379	G-A	Hetero	INTERGENIC
SBS	Chr7	12375045	C-T	Hetero	INTERGENIC
SBS	Chr7	15194990	C-T	Hetero	INTERGENIC
SBS	Chr7	15219076	T-C	Hetero	INTERGENIC
SBS	Chr7	28142909	A-G	Hetero	INTERGENIC
SBS	Chr8	2140831	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake08g025500
SBS	Chr8	7743502	T-C	Homo	INTERGENIC
SBS	Chr9	1288504	C-T	Hetero	INTERGENIC
SBS	Chr9	2280238	A-T	Hetero	INTRON
SBS	Chr9	2280241	T-C	Hetero	INTRON
SBS	Chr9	15337782	T-A	Hetero	INTERGENIC
SBS	Chr9	17182165	G-C	Hetero	INTERGENIC
SBS	Chr9	20410653	A-C	Hetero	INTERGENIC
SBS	Chr10	7282239	G-A	Hetero	INTERGENIC
SBS	Chr10	15969527	T-C	Hetero	INTRON
SBS	Chr10	17311097	C-T	Homo	INTERGENIC
SBS	Chr11	10194731	C-T	Hetero	INTERGENIC
SBS	Chr11	15550979	C-T	Homo	INTERGENIC
SBS	Chr11	16998377	G-A	Homo	INTERGENIC
SBS	Chr11	19829520	C-A	Hetero	INTERGENIC
SBS	Chr11	26067682	C-T	Hetero	INTERGENIC
SBS	Chr11	26743673	C-T	Hetero	INTERGENIC
SBS	Chr11	27916785	T-A	Homo	INTERGENIC
SBS	Chr11	28473730	T-A	Homo	INTERGENIC
SBS	Chr11	28473731	G-T	Homo	INTERGENIC
SBS	Chr11	28473735	C-T	Homo	INTERGENIC
SBS	Chr11	29012474	A-T	Hetero	INTRON
SBS	Chr12	11133746	G-C	Hetero	INTERGENIC
SBS	Chr12	12781763	C-A	Homo	INTERGENIC
SBS	Chr12	18751497	G-A	Hetero	INTERGENIC
SBS	Chr12	26019993	G-A	Hetero	INTRON
SBS	Chr12	26780874	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	15001	281000	265999	40
Deletion	Chr11	564310	564323	13
Deletion	Chr1	1196638	1196649	11
Deletion	Chr11	1266612	1266622	10
Deletion	Chr9	1502130	1502145	15
Deletion	Chr12	2471714	2471731	17
Deletion	Chr11	2512862	2512866	4
Deletion	Chr9	2836777	2836780	3
Deletion	Chr12	4004762	4004765	3
Deletion	Chr7	4057058	4057072	14
Deletion	Chr10	9336312	9336313	1
Deletion	Chr2	10266413	10266415	2
Deletion	Chr1	10348207	10348211	4
Deletion	Chr5	11193225	11193238	13
Deletion	Chr6	12664842	12664843	1
Deletion	Chr6	13452655	13452656	1
Deletion	Chr10	20232375	20232377	2
Deletion	Chr5	20463450	20463462	12
Deletion	Chr2	20521328	20521334	6	OsKitaake02g199600
Deletion	Chr3	21262042	21262043	1
Deletion	Chr5	23436483	23436489	6
Deletion	Chr11	24771349	24771366	17
Deletion	Chr11	28382289	28382294	5
Deletion	Chr7	28821800	28821810	10	OsKitaake07g274900
Deletion	Chr1	30441412	30441413	1
Deletion	Chr4	31524824	31524826	2	OsKitaake04g248000
Deletion	Chr3	32800881	32800885	4
Deletion	Chr4	33351354	33351355	1
Deletion	Chr3	36554721	36554723	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3436490	3466940
Inversion	Chr9	3436664	3467671

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes