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Mutant Information

Mutant Name	FN2657-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2657-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 77

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 454940 C-T Hetero INTERGENIC
SBS Chr1 3232316 G-T Hetero INTERGENIC
SBS Chr1 7156327 C-T Hetero INTERGENIC
SBS Chr1 9719202 C-G Hetero INTERGENIC
SBS Chr1 12256909 A-T Hetero INTERGENIC
SBS Chr1 19156849 T-C Hetero INTERGENIC
SBS Chr1 25021383 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g242000
SBS Chr1 41468393 C-T Homo INTERGENIC
SBS Chr2 11744082 G-A Hetero INTERGENIC
SBS Chr2 19911317 C-T Homo INTERGENIC
SBS Chr2 35263494 G-A Hetero INTERGENIC
SBS Chr2 37171475 C-G Homo #VALUE!
SBS Chr3 9644730 A-T Homo INTERGENIC
SBS Chr3 17054565 G-A Hetero INTERGENIC
SBS Chr3 21038626 C-A Hetero UTR_5_PRIME
SBS Chr3 23775053 A-T Hetero INTERGENIC
SBS Chr3 25477400 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 26306615 T-C Hetero INTERGENIC
SBS Chr3 36112964 T-A Hetero INTERGENIC
SBS Chr3 36467191 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g405100
SBS Chr3 37728506 T-C Homo INTRON
SBS Chr4 1448393 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g010500
SBS Chr4 5600234 C-T Hetero INTERGENIC
SBS Chr4 7594311 C-T Hetero INTERGENIC
SBS Chr4 10580563 G-A Hetero INTERGENIC
SBS Chr4 12988129 A-G Hetero INTERGENIC
SBS Chr4 14063349 T-C Homo INTERGENIC
SBS Chr4 15293549 T-A Homo INTERGENIC
SBS Chr4 18802025 G-T Hetero INTERGENIC
SBS Chr4 19946367 C-T Hetero INTERGENIC
SBS Chr4 20479224 C-T Hetero INTERGENIC
SBS Chr4 22904554 T-C Hetero INTERGENIC
SBS Chr4 29246952 G-A Hetero INTERGENIC
SBS Chr4 35922083 A-T Hetero INTERGENIC
SBS Chr5 5441062 G-A Hetero INTERGENIC
SBS Chr5 17878349 C-T Hetero INTERGENIC
SBS Chr6 5284422 G-A Hetero INTERGENIC
SBS Chr6 6965085 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g090400
SBS Chr6 6965088 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g090400
SBS Chr6 7481084 C-A Hetero INTERGENIC
SBS Chr6 7481085 T-G Hetero INTERGENIC
SBS Chr6 7481086 A-T Hetero INTERGENIC
SBS Chr6 7980466 G-A Hetero INTERGENIC
SBS Chr6 9011473 T-C Hetero INTERGENIC
SBS Chr6 12246132 C-T Hetero INTRON
SBS Chr6 14344311 C-A Hetero INTERGENIC
SBS Chr7 4195429 G-A Hetero INTERGENIC
SBS Chr7 5440781 T-C Hetero INTRON
SBS Chr7 6071581 G-T Hetero INTERGENIC
SBS Chr7 10462917 T-C Hetero INTERGENIC
SBS Chr7 11821460 C-T Hetero INTERGENIC
SBS Chr7 27505848 C-A Homo INTRON
SBS Chr8 1785935 C-T Hetero INTERGENIC
SBS Chr8 1876039 G-T Hetero INTERGENIC
SBS Chr8 5120022 T-A Hetero INTERGENIC
SBS Chr8 15010806 G-T Hetero INTERGENIC
SBS Chr8 15735934 C-G Hetero INTERGENIC
SBS Chr8 17856284 G-A Hetero INTERGENIC
SBS Chr9 2082927 T-A Hetero INTERGENIC
SBS Chr9 11918706 T-A Hetero INTRON
SBS Chr9 12326422 A-G Hetero INTERGENIC
SBS Chr9 13182234 G-C Homo INTERGENIC
SBS Chr9 13226224 C-A Hetero INTERGENIC
SBS Chr9 17316343 T-A Hetero INTERGENIC
SBS Chr9 21543163 C-T Hetero INTERGENIC
SBS Chr10 23211300 G-A Hetero INTERGENIC
SBS Chr10 23579416 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g201600
SBS Chr10 23733870 G-T Homo INTERGENIC
SBS Chr11 20065230 C-A Hetero INTERGENIC
SBS Chr12 3850773 A-G Hetero INTERGENIC
SBS Chr12 4088080 C-T Hetero INTERGENIC
SBS Chr12 4499840 C-A Hetero INTERGENIC
SBS Chr12 13714920 C-T Hetero INTERGENIC
SBS Chr12 14599023 C-A Hetero INTERGENIC
SBS Chr12 15792565 C-T Homo INTERGENIC
SBS Chr12 15863386 G-A Homo INTERGENIC
SBS Chr12 19815462 C-T Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3714656 3714658 2
Deletion Chr12 3915185 3915187 2
Deletion Chr3 4267113 4267114 1
Deletion Chr10 5452693 5452729 36
Deletion Chr10 7507666 7507667 1
Deletion Chr1 8265086 8265095 9
Deletion Chr10 9276906 9276910 4
Deletion Chr1 9719242 9719243 1
Deletion Chr11 10601656 10601666 10
Deletion Chr8 10747945 10747946 1
Deletion Chr3 11363702 11363722 20
Deletion Chr1 14520492 14520494 2
Deletion Chr6 18825016 18825017 1
Deletion Chr6 19123419 19123420 1
Deletion Chr1 19171577 19171579 2
Deletion Chr2 23174218 23174221 3
Deletion Chr6 26215298 26215318 20
Deletion Chr2 28095474 28095477 3
Deletion Chr7 28422001 28429000 6999 2
Deletion Chr1 30574629 30574630 1 OsKitaake01g302600
Deletion Chr4 32549577 32549579 2 OsKitaake04g261000
Deletion Chr3 35824788 35824793 5
Deletion Chr2 37033754 37033759 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25537567 25537575 7
Insertion Chr3 7593719 7593722 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11776588 Chr1 20388913 OsKitaake07g108500
Translocation Chr7 11776756 Chr1 20388914 OsKitaake07g108500
Translocation Chr12 15651039 Chr7 11776771 OsKitaake07g108500
Translocation Chr12 15651617 Chr7 11776579 OsKitaake07g108500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	454940	C-T	Hetero	INTERGENIC
SBS	Chr1	3232316	G-T	Hetero	INTERGENIC
SBS	Chr1	7156327	C-T	Hetero	INTERGENIC
SBS	Chr1	9719202	C-G	Hetero	INTERGENIC
SBS	Chr1	12256909	A-T	Hetero	INTERGENIC
SBS	Chr1	19156849	T-C	Hetero	INTERGENIC
SBS	Chr1	25021383	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g242000
SBS	Chr1	41468393	C-T	Homo	INTERGENIC
SBS	Chr2	11744082	G-A	Hetero	INTERGENIC
SBS	Chr2	19911317	C-T	Homo	INTERGENIC
SBS	Chr2	35263494	G-A	Hetero	INTERGENIC
SBS	Chr2	37171475	C-G	Homo	#VALUE!
SBS	Chr3	9644730	A-T	Homo	INTERGENIC
SBS	Chr3	17054565	G-A	Hetero	INTERGENIC
SBS	Chr3	21038626	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	23775053	A-T	Hetero	INTERGENIC
SBS	Chr3	25477400	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	26306615	T-C	Hetero	INTERGENIC
SBS	Chr3	36112964	T-A	Hetero	INTERGENIC
SBS	Chr3	36467191	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g405100
SBS	Chr3	37728506	T-C	Homo	INTRON
SBS	Chr4	1448393	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g010500
SBS	Chr4	5600234	C-T	Hetero	INTERGENIC
SBS	Chr4	7594311	C-T	Hetero	INTERGENIC
SBS	Chr4	10580563	G-A	Hetero	INTERGENIC
SBS	Chr4	12988129	A-G	Hetero	INTERGENIC
SBS	Chr4	14063349	T-C	Homo	INTERGENIC
SBS	Chr4	15293549	T-A	Homo	INTERGENIC
SBS	Chr4	18802025	G-T	Hetero	INTERGENIC
SBS	Chr4	19946367	C-T	Hetero	INTERGENIC
SBS	Chr4	20479224	C-T	Hetero	INTERGENIC
SBS	Chr4	22904554	T-C	Hetero	INTERGENIC
SBS	Chr4	29246952	G-A	Hetero	INTERGENIC
SBS	Chr4	35922083	A-T	Hetero	INTERGENIC
SBS	Chr5	5441062	G-A	Hetero	INTERGENIC
SBS	Chr5	17878349	C-T	Hetero	INTERGENIC
SBS	Chr6	5284422	G-A	Hetero	INTERGENIC
SBS	Chr6	6965085	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g090400
SBS	Chr6	6965088	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g090400
SBS	Chr6	7481084	C-A	Hetero	INTERGENIC
SBS	Chr6	7481085	T-G	Hetero	INTERGENIC
SBS	Chr6	7481086	A-T	Hetero	INTERGENIC
SBS	Chr6	7980466	G-A	Hetero	INTERGENIC
SBS	Chr6	9011473	T-C	Hetero	INTERGENIC
SBS	Chr6	12246132	C-T	Hetero	INTRON
SBS	Chr6	14344311	C-A	Hetero	INTERGENIC
SBS	Chr7	4195429	G-A	Hetero	INTERGENIC
SBS	Chr7	5440781	T-C	Hetero	INTRON
SBS	Chr7	6071581	G-T	Hetero	INTERGENIC
SBS	Chr7	10462917	T-C	Hetero	INTERGENIC
SBS	Chr7	11821460	C-T	Hetero	INTERGENIC
SBS	Chr7	27505848	C-A	Homo	INTRON
SBS	Chr8	1785935	C-T	Hetero	INTERGENIC
SBS	Chr8	1876039	G-T	Hetero	INTERGENIC
SBS	Chr8	5120022	T-A	Hetero	INTERGENIC
SBS	Chr8	15010806	G-T	Hetero	INTERGENIC
SBS	Chr8	15735934	C-G	Hetero	INTERGENIC
SBS	Chr8	17856284	G-A	Hetero	INTERGENIC
SBS	Chr9	2082927	T-A	Hetero	INTERGENIC
SBS	Chr9	11918706	T-A	Hetero	INTRON
SBS	Chr9	12326422	A-G	Hetero	INTERGENIC
SBS	Chr9	13182234	G-C	Homo	INTERGENIC
SBS	Chr9	13226224	C-A	Hetero	INTERGENIC
SBS	Chr9	17316343	T-A	Hetero	INTERGENIC
SBS	Chr9	21543163	C-T	Hetero	INTERGENIC
SBS	Chr10	23211300	G-A	Hetero	INTERGENIC
SBS	Chr10	23579416	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g201600
SBS	Chr10	23733870	G-T	Homo	INTERGENIC
SBS	Chr11	20065230	C-A	Hetero	INTERGENIC
SBS	Chr12	3850773	A-G	Hetero	INTERGENIC
SBS	Chr12	4088080	C-T	Hetero	INTERGENIC
SBS	Chr12	4499840	C-A	Hetero	INTERGENIC
SBS	Chr12	13714920	C-T	Hetero	INTERGENIC
SBS	Chr12	14599023	C-A	Hetero	INTERGENIC
SBS	Chr12	15792565	C-T	Homo	INTERGENIC
SBS	Chr12	15863386	G-A	Homo	INTERGENIC
SBS	Chr12	19815462	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3714656	3714658	2
Deletion	Chr12	3915185	3915187	2
Deletion	Chr3	4267113	4267114	1
Deletion	Chr10	5452693	5452729	36
Deletion	Chr10	7507666	7507667	1
Deletion	Chr1	8265086	8265095	9
Deletion	Chr10	9276906	9276910	4
Deletion	Chr1	9719242	9719243	1
Deletion	Chr11	10601656	10601666	10
Deletion	Chr8	10747945	10747946	1
Deletion	Chr3	11363702	11363722	20
Deletion	Chr1	14520492	14520494	2
Deletion	Chr6	18825016	18825017	1
Deletion	Chr6	19123419	19123420	1
Deletion	Chr1	19171577	19171579	2
Deletion	Chr2	23174218	23174221	3
Deletion	Chr6	26215298	26215318	20
Deletion	Chr2	28095474	28095477	3
Deletion	Chr7	28422001	28429000	6999	2
Deletion	Chr1	30574629	30574630	1	OsKitaake01g302600
Deletion	Chr4	32549577	32549579	2	OsKitaake04g261000
Deletion	Chr3	35824788	35824793	5
Deletion	Chr2	37033754	37033759	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11776588	Chr1	20388913	OsKitaake07g108500
Translocation	Chr7	11776756	Chr1	20388914	OsKitaake07g108500
Translocation	Chr12	15651039	Chr7	11776771	OsKitaake07g108500
Translocation	Chr12	15651617	Chr7	11776579	OsKitaake07g108500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes