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Mutant Information

Mutant Name	FN2657-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2657-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 66

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3232316 G-T Hetero INTERGENIC
SBS Chr1 7156327 C-T Hetero INTERGENIC
SBS Chr1 9719202 C-G Hetero INTERGENIC
SBS Chr1 10015597 G-A Hetero INTERGENIC
SBS Chr1 12256909 A-T Hetero INTERGENIC
SBS Chr1 12310830 A-G Hetero UTR_3_PRIME
SBS Chr1 20490179 T-C Hetero INTERGENIC
SBS Chr1 24758920 G-C Hetero INTERGENIC
SBS Chr1 25021383 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g242000
SBS Chr1 41468393 C-T Homo INTERGENIC
SBS Chr1 41837270 A-G Hetero INTRON
SBS Chr2 4826354 C-T Hetero INTERGENIC
SBS Chr2 11744082 G-A Hetero INTERGENIC
SBS Chr2 19911317 C-T Homo INTERGENIC
SBS Chr2 37171475 C-G Homo #VALUE!
SBS Chr3 6754055 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g095900
SBS Chr3 7055975 G-A Hetero INTRON
SBS Chr3 9644730 A-T Homo INTERGENIC
SBS Chr3 17054565 G-A Hetero INTERGENIC
SBS Chr3 21038626 C-A Hetero UTR_5_PRIME
SBS Chr3 25477400 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 26306615 T-C Hetero INTERGENIC
SBS Chr3 34931065 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g381500
SBS Chr3 37728506 T-C Homo INTRON
SBS Chr4 12988129 A-G Hetero INTERGENIC
SBS Chr4 14063349 T-C Homo INTERGENIC
SBS Chr4 15293549 T-A Homo INTERGENIC
SBS Chr4 18515776 T-A Hetero INTERGENIC
SBS Chr4 20479224 C-T Hetero INTERGENIC
SBS Chr4 23899789 C-A Hetero INTERGENIC
SBS Chr4 34898456 G-T Hetero UTR_3_PRIME
SBS Chr5 5441062 G-A Hetero INTERGENIC
SBS Chr5 17878349 C-T Hetero INTERGENIC
SBS Chr6 6965085 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g090400
SBS Chr6 6965088 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g090400
SBS Chr6 7481084 C-A Hetero INTERGENIC
SBS Chr6 7481085 T-G Hetero INTERGENIC
SBS Chr6 7481086 A-T Hetero INTERGENIC
SBS Chr6 7594142 G-A Hetero INTERGENIC
SBS Chr6 14344311 C-A Hetero INTERGENIC
SBS Chr6 22095728 T-G Hetero INTERGENIC
SBS Chr7 4195429 G-A Hetero INTERGENIC
SBS Chr7 5440781 T-C Hetero INTRON
SBS Chr7 11821460 C-T Hetero INTERGENIC
SBS Chr7 27505848 C-A Homo INTRON
SBS Chr8 1785935 C-T Hetero INTERGENIC
SBS Chr8 5120022 T-A Hetero INTERGENIC
SBS Chr8 15735934 C-G Hetero INTERGENIC
SBS Chr8 17542597 G-A Hetero INTERGENIC
SBS Chr8 27182171 C-T Hetero INTERGENIC
SBS Chr9 11918706 T-A Hetero INTRON
SBS Chr9 13182234 G-C Homo INTERGENIC
SBS Chr9 13226224 C-A Hetero INTERGENIC
SBS Chr9 17316343 T-A Hetero INTERGENIC
SBS Chr10 127519 G-A Hetero INTERGENIC
SBS Chr10 4705208 C-T Hetero INTERGENIC
SBS Chr10 23579416 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g201600
SBS Chr11 18062060 G-A Hetero INTERGENIC
SBS Chr11 20065230 C-A Hetero INTERGENIC
SBS Chr12 4499840 C-A Hetero INTERGENIC
SBS Chr12 7338249 G-C Hetero INTERGENIC
SBS Chr12 13714920 C-T Hetero INTERGENIC
SBS Chr12 15792565 C-T Homo INTERGENIC
SBS Chr12 15863386 G-A Hetero INTERGENIC
SBS Chr12 19815462 C-T Homo INTERGENIC
SBS Chr12 22251187 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3915185 3915187 2
Deletion Chr3 4267113 4267114 1
Deletion Chr10 7507666 7507667 1
Deletion Chr10 9276906 9276910 4
Deletion Chr11 10601656 10601666 10
Deletion Chr3 11363702 11363722 20
Deletion Chr10 15787381 15787383 2
Deletion Chr7 18441225 18441226 1 OsKitaake07g149600
Deletion Chr2 23174218 23174221 3
Deletion Chr11 23388266 23388275 9
Deletion Chr6 26215298 26215318 20
Deletion Chr1 27236028 27236029 1
Deletion Chr7 28422001 28429000 6999 2
Deletion Chr4 32549577 32549579 2 OsKitaake04g261000
Deletion Chr3 35824788 35824793 5
Deletion Chr2 37033754 37033759 5

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11776588 Chr1 20388913 OsKitaake07g108500
Translocation Chr12 15651046 Chr7 11776771 OsKitaake07g108500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3232316	G-T	Hetero	INTERGENIC
SBS	Chr1	7156327	C-T	Hetero	INTERGENIC
SBS	Chr1	9719202	C-G	Hetero	INTERGENIC
SBS	Chr1	10015597	G-A	Hetero	INTERGENIC
SBS	Chr1	12256909	A-T	Hetero	INTERGENIC
SBS	Chr1	12310830	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	20490179	T-C	Hetero	INTERGENIC
SBS	Chr1	24758920	G-C	Hetero	INTERGENIC
SBS	Chr1	25021383	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g242000
SBS	Chr1	41468393	C-T	Homo	INTERGENIC
SBS	Chr1	41837270	A-G	Hetero	INTRON
SBS	Chr2	4826354	C-T	Hetero	INTERGENIC
SBS	Chr2	11744082	G-A	Hetero	INTERGENIC
SBS	Chr2	19911317	C-T	Homo	INTERGENIC
SBS	Chr2	37171475	C-G	Homo	#VALUE!
SBS	Chr3	6754055	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g095900
SBS	Chr3	7055975	G-A	Hetero	INTRON
SBS	Chr3	9644730	A-T	Homo	INTERGENIC
SBS	Chr3	17054565	G-A	Hetero	INTERGENIC
SBS	Chr3	21038626	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	25477400	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	26306615	T-C	Hetero	INTERGENIC
SBS	Chr3	34931065	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g381500
SBS	Chr3	37728506	T-C	Homo	INTRON
SBS	Chr4	12988129	A-G	Hetero	INTERGENIC
SBS	Chr4	14063349	T-C	Homo	INTERGENIC
SBS	Chr4	15293549	T-A	Homo	INTERGENIC
SBS	Chr4	18515776	T-A	Hetero	INTERGENIC
SBS	Chr4	20479224	C-T	Hetero	INTERGENIC
SBS	Chr4	23899789	C-A	Hetero	INTERGENIC
SBS	Chr4	34898456	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	5441062	G-A	Hetero	INTERGENIC
SBS	Chr5	17878349	C-T	Hetero	INTERGENIC
SBS	Chr6	6965085	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g090400
SBS	Chr6	6965088	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g090400
SBS	Chr6	7481084	C-A	Hetero	INTERGENIC
SBS	Chr6	7481085	T-G	Hetero	INTERGENIC
SBS	Chr6	7481086	A-T	Hetero	INTERGENIC
SBS	Chr6	7594142	G-A	Hetero	INTERGENIC
SBS	Chr6	14344311	C-A	Hetero	INTERGENIC
SBS	Chr6	22095728	T-G	Hetero	INTERGENIC
SBS	Chr7	4195429	G-A	Hetero	INTERGENIC
SBS	Chr7	5440781	T-C	Hetero	INTRON
SBS	Chr7	11821460	C-T	Hetero	INTERGENIC
SBS	Chr7	27505848	C-A	Homo	INTRON
SBS	Chr8	1785935	C-T	Hetero	INTERGENIC
SBS	Chr8	5120022	T-A	Hetero	INTERGENIC
SBS	Chr8	15735934	C-G	Hetero	INTERGENIC
SBS	Chr8	17542597	G-A	Hetero	INTERGENIC
SBS	Chr8	27182171	C-T	Hetero	INTERGENIC
SBS	Chr9	11918706	T-A	Hetero	INTRON
SBS	Chr9	13182234	G-C	Homo	INTERGENIC
SBS	Chr9	13226224	C-A	Hetero	INTERGENIC
SBS	Chr9	17316343	T-A	Hetero	INTERGENIC
SBS	Chr10	127519	G-A	Hetero	INTERGENIC
SBS	Chr10	4705208	C-T	Hetero	INTERGENIC
SBS	Chr10	23579416	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g201600
SBS	Chr11	18062060	G-A	Hetero	INTERGENIC
SBS	Chr11	20065230	C-A	Hetero	INTERGENIC
SBS	Chr12	4499840	C-A	Hetero	INTERGENIC
SBS	Chr12	7338249	G-C	Hetero	INTERGENIC
SBS	Chr12	13714920	C-T	Hetero	INTERGENIC
SBS	Chr12	15792565	C-T	Homo	INTERGENIC
SBS	Chr12	15863386	G-A	Hetero	INTERGENIC
SBS	Chr12	19815462	C-T	Homo	INTERGENIC
SBS	Chr12	22251187	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3915185	3915187	2
Deletion	Chr3	4267113	4267114	1
Deletion	Chr10	7507666	7507667	1
Deletion	Chr10	9276906	9276910	4
Deletion	Chr11	10601656	10601666	10
Deletion	Chr3	11363702	11363722	20
Deletion	Chr10	15787381	15787383	2
Deletion	Chr7	18441225	18441226	1	OsKitaake07g149600
Deletion	Chr2	23174218	23174221	3
Deletion	Chr11	23388266	23388275	9
Deletion	Chr6	26215298	26215318	20
Deletion	Chr1	27236028	27236029	1
Deletion	Chr7	28422001	28429000	6999	2
Deletion	Chr4	32549577	32549579	2	OsKitaake04g261000
Deletion	Chr3	35824788	35824793	5
Deletion	Chr2	37033754	37033759	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11776588	Chr1	20388913	OsKitaake07g108500
Translocation	Chr12	15651046	Chr7	11776771	OsKitaake07g108500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes