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Mutant Information

Mutant Name	FN2658-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2658-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10775480 T-C Homo INTERGENIC
SBS Chr1 12754558 A-G Hetero INTERGENIC
SBS Chr1 16295578 T-A Homo INTERGENIC
SBS Chr1 22014426 A-T Hetero INTERGENIC
SBS Chr1 29448273 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g288100
SBS Chr2 11476635 C-T Homo INTERGENIC
SBS Chr2 17098914 A-C Homo INTERGENIC
SBS Chr2 26743330 A-T Homo INTERGENIC
SBS Chr2 28020718 C-A Homo INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 5028670 A-G Homo INTERGENIC
SBS Chr3 22107703 T-C Hetero INTRON
SBS Chr3 24899214 G-A Hetero INTERGENIC
SBS Chr3 32672457 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 37313047 G-T Hetero INTERGENIC
SBS Chr4 9515965 A-G Homo INTERGENIC
SBS Chr4 15308463 T-A Homo INTERGENIC
SBS Chr4 18779264 A-G Homo INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 22838393 T-A Hetero INTERGENIC
SBS Chr4 26501258 C-T Homo UTR_3_PRIME
SBS Chr4 31582690 G-A Homo INTRON
SBS Chr5 7448738 T-C Hetero INTERGENIC
SBS Chr5 12812072 G-A Hetero INTERGENIC
SBS Chr5 14493360 G-A Homo INTERGENIC
SBS Chr5 19607690 G-A Hetero INTERGENIC
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr5 21343407 T-C Hetero INTERGENIC
SBS Chr5 25944145 C-T Hetero INTERGENIC
SBS Chr5 29659856 T-C Hetero INTERGENIC
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 19847812 G-A Hetero INTERGENIC
SBS Chr6 25474610 G-A Hetero INTERGENIC
SBS Chr7 134881 T-A Hetero INTERGENIC
SBS Chr7 15567968 C-T Homo SYNONYMOUS_CODING
SBS Chr8 182626 C-T Hetero INTERGENIC
SBS Chr8 4927793 G-A Hetero INTERGENIC
SBS Chr8 5994149 G-A Hetero INTERGENIC
SBS Chr8 15424759 C-T Hetero INTERGENIC
SBS Chr8 21762090 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g164800
SBS Chr8 23620191 G-A Homo INTERGENIC
SBS Chr9 4089512 C-T Homo INTERGENIC
SBS Chr9 5094822 C-A Hetero INTRON
SBS Chr10 4972112 A-C Hetero INTERGENIC
SBS Chr10 23840658 G-T Hetero INTERGENIC
SBS Chr10 24014083 C-T Hetero INTERGENIC
SBS Chr11 8574537 T-A Hetero INTERGENIC
SBS Chr11 10843738 G-A Hetero INTERGENIC
SBS Chr11 14674067 G-A Hetero INTERGENIC
SBS Chr11 16665986 G-T Hetero INTERGENIC
SBS Chr11 23912550 G-A Hetero INTERGENIC
SBS Chr11 25356751 G-A Hetero INTERGENIC
SBS Chr12 4025104 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g054700
SBS Chr12 9814309 T-G Hetero INTERGENIC
SBS Chr12 22859375 C-T Hetero INTRON
SBS Chr12 23685210 A-G Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 449607 449609 2
Deletion Chr12 1187152 1187155 3
Deletion Chr9 1878583 1878584 1
Deletion Chr6 5533491 5533508 17
Deletion Chr6 5891498 5891514 16
Deletion Chr6 7489307 7489308 1
Deletion Chr1 10775676 10775684 8
Deletion Chr5 12313001 12393000 79999 3
Deletion Chr5 12404001 12415000 10999
Deletion Chr11 12874217 12874219 2
Deletion Chr4 14765929 14765935 6
Deletion Chr6 14886843 14886860 17
Deletion Chr8 15095657 15095663 6 OsKitaake08g117900
Deletion Chr9 15933351 15933352 1
Deletion Chr2 16979001 17099000 119999 2
Deletion Chr9 17817299 17817304 5
Deletion Chr12 18808480 18808492 12
Deletion Chr10 19377001 19385000 7999 OsKitaake10g141100
Deletion Chr1 20969281 20969284 3
Deletion Chr10 21770001 21801000 30999 5
Deletion Chr10 22886114 22886118 4 OsKitaake10g191100
Deletion Chr7 24379597 24379598 1
Deletion Chr5 29305338 29305347 9
Deletion Chr4 31761435 31761450 15
Deletion Chr3 36322990 36322992 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13816208 13816211 2
Insertion Chr1 36424500 36424503 2
Insertion Chr2 19776358 19776364 5
Insertion Chr3 560274 560279 4
Insertion Chr12 288504 288507 2
Insertion Chr12 1694412 1694419 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 18360843 18461134
Inversion Chr4 18395125 18461135 OsKitaake04g092500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10319211 Chr4 36207945 OsKitaake04g313000
Translocation Chr8 28446383 Chr4 11563756
Translocation Chr8 28446403 Chr4 11562223

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10775480	T-C	Homo	INTERGENIC
SBS	Chr1	12754558	A-G	Hetero	INTERGENIC
SBS	Chr1	16295578	T-A	Homo	INTERGENIC
SBS	Chr1	22014426	A-T	Hetero	INTERGENIC
SBS	Chr1	29448273	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g288100
SBS	Chr2	11476635	C-T	Homo	INTERGENIC
SBS	Chr2	17098914	A-C	Homo	INTERGENIC
SBS	Chr2	26743330	A-T	Homo	INTERGENIC
SBS	Chr2	28020718	C-A	Homo	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	5028670	A-G	Homo	INTERGENIC
SBS	Chr3	22107703	T-C	Hetero	INTRON
SBS	Chr3	24899214	G-A	Hetero	INTERGENIC
SBS	Chr3	32672457	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	37313047	G-T	Hetero	INTERGENIC
SBS	Chr4	9515965	A-G	Homo	INTERGENIC
SBS	Chr4	15308463	T-A	Homo	INTERGENIC
SBS	Chr4	18779264	A-G	Homo	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	22838393	T-A	Hetero	INTERGENIC
SBS	Chr4	26501258	C-T	Homo	UTR_3_PRIME
SBS	Chr4	31582690	G-A	Homo	INTRON
SBS	Chr5	7448738	T-C	Hetero	INTERGENIC
SBS	Chr5	12812072	G-A	Hetero	INTERGENIC
SBS	Chr5	14493360	G-A	Homo	INTERGENIC
SBS	Chr5	19607690	G-A	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr5	21343407	T-C	Hetero	INTERGENIC
SBS	Chr5	25944145	C-T	Hetero	INTERGENIC
SBS	Chr5	29659856	T-C	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	19847812	G-A	Hetero	INTERGENIC
SBS	Chr6	25474610	G-A	Hetero	INTERGENIC
SBS	Chr7	134881	T-A	Hetero	INTERGENIC
SBS	Chr7	15567968	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	182626	C-T	Hetero	INTERGENIC
SBS	Chr8	4927793	G-A	Hetero	INTERGENIC
SBS	Chr8	5994149	G-A	Hetero	INTERGENIC
SBS	Chr8	15424759	C-T	Hetero	INTERGENIC
SBS	Chr8	21762090	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g164800
SBS	Chr8	23620191	G-A	Homo	INTERGENIC
SBS	Chr9	4089512	C-T	Homo	INTERGENIC
SBS	Chr9	5094822	C-A	Hetero	INTRON
SBS	Chr10	4972112	A-C	Hetero	INTERGENIC
SBS	Chr10	23840658	G-T	Hetero	INTERGENIC
SBS	Chr10	24014083	C-T	Hetero	INTERGENIC
SBS	Chr11	8574537	T-A	Hetero	INTERGENIC
SBS	Chr11	10843738	G-A	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Hetero	INTERGENIC
SBS	Chr11	16665986	G-T	Hetero	INTERGENIC
SBS	Chr11	23912550	G-A	Hetero	INTERGENIC
SBS	Chr11	25356751	G-A	Hetero	INTERGENIC
SBS	Chr12	4025104	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g054700
SBS	Chr12	9814309	T-G	Hetero	INTERGENIC
SBS	Chr12	22859375	C-T	Hetero	INTRON
SBS	Chr12	23685210	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	449607	449609	2
Deletion	Chr12	1187152	1187155	3
Deletion	Chr9	1878583	1878584	1
Deletion	Chr6	5533491	5533508	17
Deletion	Chr6	5891498	5891514	16
Deletion	Chr6	7489307	7489308	1
Deletion	Chr1	10775676	10775684	8
Deletion	Chr5	12313001	12393000	79999	3
Deletion	Chr5	12404001	12415000	10999
Deletion	Chr11	12874217	12874219	2
Deletion	Chr4	14765929	14765935	6
Deletion	Chr6	14886843	14886860	17
Deletion	Chr8	15095657	15095663	6	OsKitaake08g117900
Deletion	Chr9	15933351	15933352	1
Deletion	Chr2	16979001	17099000	119999	2
Deletion	Chr9	17817299	17817304	5
Deletion	Chr12	18808480	18808492	12
Deletion	Chr10	19377001	19385000	7999	OsKitaake10g141100
Deletion	Chr1	20969281	20969284	3
Deletion	Chr10	21770001	21801000	30999	5
Deletion	Chr10	22886114	22886118	4	OsKitaake10g191100
Deletion	Chr7	24379597	24379598	1
Deletion	Chr5	29305338	29305347	9
Deletion	Chr4	31761435	31761450	15
Deletion	Chr3	36322990	36322992	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	18360843	18461134
Inversion	Chr4	18395125	18461135	OsKitaake04g092500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes