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Mutant Information

Mutant Name	FN2659-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2659-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21448011 G-A Hetero INTERGENIC
SBS Chr1 23779724 G-A Homo INTERGENIC
SBS Chr1 39330925 A-T Hetero INTERGENIC
SBS Chr1 39330926 T-A Hetero INTERGENIC
SBS Chr2 12758277 T-G Homo INTRON
SBS Chr2 14234726 G-A Hetero INTERGENIC
SBS Chr2 17455749 G-C Hetero INTERGENIC
SBS Chr2 17652800 A-G Homo INTERGENIC
SBS Chr2 20923335 G-A Hetero INTERGENIC
SBS Chr2 23949230 C-T Hetero INTERGENIC
SBS Chr2 31979627 C-A Hetero INTERGENIC
SBS Chr2 31979628 G-A Hetero INTERGENIC
SBS Chr3 2499792 G-T Hetero INTRON
SBS Chr3 10498366 C-A Hetero INTRON
SBS Chr3 11785286 A-T Hetero INTERGENIC
SBS Chr3 12559142 C-T Homo INTERGENIC
SBS Chr3 17779511 A-G Hetero UTR_3_PRIME
SBS Chr3 18474217 A-T Hetero INTERGENIC
SBS Chr3 18474219 T-G Hetero INTERGENIC
SBS Chr3 25634750 G-A Homo INTERGENIC
SBS Chr3 25634751 C-T Homo INTERGENIC
SBS Chr3 30125592 C-T Homo INTERGENIC
SBS Chr3 33220856 C-T Hetero INTERGENIC
SBS Chr3 35194575 G-A Homo INTERGENIC
SBS Chr4 5806135 A-T Hetero INTERGENIC
SBS Chr4 7793826 A-C Hetero INTERGENIC
SBS Chr4 8149444 T-C Hetero UTR_5_PRIME
SBS Chr4 14039510 C-A Hetero INTERGENIC
SBS Chr4 22208840 C-T Hetero INTERGENIC
SBS Chr4 31154047 C-T Hetero INTERGENIC
SBS Chr4 34222105 T-C Hetero INTERGENIC
SBS Chr5 4444992 T-C Hetero UTR_3_PRIME
SBS Chr5 4456571 T-G Hetero INTERGENIC
SBS Chr5 6234833 G-A Hetero UTR_5_PRIME
SBS Chr5 16879529 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g128900
SBS Chr5 24972644 T-G Hetero INTERGENIC
SBS Chr6 14552759 T-A Hetero INTERGENIC
SBS Chr6 15005377 G-T Hetero INTERGENIC
SBS Chr6 21091141 G-A Hetero INTERGENIC
SBS Chr6 21236455 T-A Hetero SPLICE_SITE_REGION
SBS Chr6 26419323 A-G Hetero INTRON
SBS Chr7 5675925 T-C Hetero INTERGENIC
SBS Chr7 14205490 C-T Homo INTERGENIC
SBS Chr7 28489460 G-A Hetero INTERGENIC
SBS Chr8 10407909 G-A Hetero INTERGENIC
SBS Chr8 18276960 G-T Hetero INTERGENIC
SBS Chr8 18687423 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g138400
SBS Chr8 19738867 T-A Hetero INTERGENIC
SBS Chr8 23044546 G-T Homo INTRON
SBS Chr9 7933874 C-T Homo INTERGENIC
SBS Chr9 8325988 G-A Hetero INTERGENIC
SBS Chr9 9946003 C-T Hetero INTERGENIC
SBS Chr9 15386641 T-C Hetero INTERGENIC
SBS Chr9 22451933 G-A Hetero INTERGENIC
SBS Chr10 9763207 C-T Hetero INTERGENIC
SBS Chr10 22106128 C-A Hetero INTERGENIC
SBS Chr11 15045554 C-T Hetero INTERGENIC
SBS Chr11 28968787 A-G Hetero INTERGENIC
SBS Chr12 715771 C-A Hetero INTERGENIC
SBS Chr12 7383394 C-T Hetero INTERGENIC
SBS Chr12 8314789 A-G Hetero INTERGENIC
SBS Chr12 9257651 C-T Hetero INTERGENIC
SBS Chr12 10450860 C-A Hetero INTERGENIC
SBS Chr12 11822618 T-G Hetero INTERGENIC
SBS Chr12 11822620 A-C Hetero INTERGENIC
SBS Chr12 12180224 A-G Hetero INTERGENIC
SBS Chr12 15189679 A-C Hetero INTERGENIC
SBS Chr12 22667881 T-A Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 827372 827374 2
Deletion Chr4 909836 909848 12
Deletion Chr5 1365001 1382000 16999 OsKitaake05g017100
Deletion Chr7 2848775 2848776 1
Deletion Chr8 11022832 11022833 1
Deletion Chr10 17595411 17595423 12
Deletion Chr5 21867251 21867255 4
Deletion Chr7 21976534 21976536 2
Deletion Chr11 23699448 23699449 1
Deletion Chr3 25634636 25634638 2
Deletion Chr3 25640922 25640926 4
Deletion Chr2 28729517 28729521 4
Deletion Chr6 29462000 29462004 4
Deletion Chr3 36321034 36321035 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 9129359 9129361 1
Insertion Chr4 23484778 23484781 2
Insertion Chr4 28828318 28828321 2
Insertion Chr6 24953396 24953399 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 5838451 6204569
Inversion Chr4 5838627 6204579
Inversion Chr10 16303757 16448753 OsKitaake10g109800
Inversion Chr10 16303762 16448753 OsKitaake10g109800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 5838467 Chr3 14032606
Translocation Chr4 5838611 Chr3 14032614

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21448011	G-A	Hetero	INTERGENIC
SBS	Chr1	23779724	G-A	Homo	INTERGENIC
SBS	Chr1	39330925	A-T	Hetero	INTERGENIC
SBS	Chr1	39330926	T-A	Hetero	INTERGENIC
SBS	Chr2	12758277	T-G	Homo	INTRON
SBS	Chr2	14234726	G-A	Hetero	INTERGENIC
SBS	Chr2	17455749	G-C	Hetero	INTERGENIC
SBS	Chr2	17652800	A-G	Homo	INTERGENIC
SBS	Chr2	20923335	G-A	Hetero	INTERGENIC
SBS	Chr2	23949230	C-T	Hetero	INTERGENIC
SBS	Chr2	31979627	C-A	Hetero	INTERGENIC
SBS	Chr2	31979628	G-A	Hetero	INTERGENIC
SBS	Chr3	2499792	G-T	Hetero	INTRON
SBS	Chr3	10498366	C-A	Hetero	INTRON
SBS	Chr3	11785286	A-T	Hetero	INTERGENIC
SBS	Chr3	12559142	C-T	Homo	INTERGENIC
SBS	Chr3	17779511	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	18474217	A-T	Hetero	INTERGENIC
SBS	Chr3	18474219	T-G	Hetero	INTERGENIC
SBS	Chr3	25634750	G-A	Homo	INTERGENIC
SBS	Chr3	25634751	C-T	Homo	INTERGENIC
SBS	Chr3	30125592	C-T	Homo	INTERGENIC
SBS	Chr3	33220856	C-T	Hetero	INTERGENIC
SBS	Chr3	35194575	G-A	Homo	INTERGENIC
SBS	Chr4	5806135	A-T	Hetero	INTERGENIC
SBS	Chr4	7793826	A-C	Hetero	INTERGENIC
SBS	Chr4	8149444	T-C	Hetero	UTR_5_PRIME
SBS	Chr4	14039510	C-A	Hetero	INTERGENIC
SBS	Chr4	22208840	C-T	Hetero	INTERGENIC
SBS	Chr4	31154047	C-T	Hetero	INTERGENIC
SBS	Chr4	34222105	T-C	Hetero	INTERGENIC
SBS	Chr5	4444992	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	4456571	T-G	Hetero	INTERGENIC
SBS	Chr5	6234833	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	16879529	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g128900
SBS	Chr5	24972644	T-G	Hetero	INTERGENIC
SBS	Chr6	14552759	T-A	Hetero	INTERGENIC
SBS	Chr6	15005377	G-T	Hetero	INTERGENIC
SBS	Chr6	21091141	G-A	Hetero	INTERGENIC
SBS	Chr6	21236455	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr6	26419323	A-G	Hetero	INTRON
SBS	Chr7	5675925	T-C	Hetero	INTERGENIC
SBS	Chr7	14205490	C-T	Homo	INTERGENIC
SBS	Chr7	28489460	G-A	Hetero	INTERGENIC
SBS	Chr8	10407909	G-A	Hetero	INTERGENIC
SBS	Chr8	18276960	G-T	Hetero	INTERGENIC
SBS	Chr8	18687423	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g138400
SBS	Chr8	19738867	T-A	Hetero	INTERGENIC
SBS	Chr8	23044546	G-T	Homo	INTRON
SBS	Chr9	7933874	C-T	Homo	INTERGENIC
SBS	Chr9	8325988	G-A	Hetero	INTERGENIC
SBS	Chr9	9946003	C-T	Hetero	INTERGENIC
SBS	Chr9	15386641	T-C	Hetero	INTERGENIC
SBS	Chr9	22451933	G-A	Hetero	INTERGENIC
SBS	Chr10	9763207	C-T	Hetero	INTERGENIC
SBS	Chr10	22106128	C-A	Hetero	INTERGENIC
SBS	Chr11	15045554	C-T	Hetero	INTERGENIC
SBS	Chr11	28968787	A-G	Hetero	INTERGENIC
SBS	Chr12	715771	C-A	Hetero	INTERGENIC
SBS	Chr12	7383394	C-T	Hetero	INTERGENIC
SBS	Chr12	8314789	A-G	Hetero	INTERGENIC
SBS	Chr12	9257651	C-T	Hetero	INTERGENIC
SBS	Chr12	10450860	C-A	Hetero	INTERGENIC
SBS	Chr12	11822618	T-G	Hetero	INTERGENIC
SBS	Chr12	11822620	A-C	Hetero	INTERGENIC
SBS	Chr12	12180224	A-G	Hetero	INTERGENIC
SBS	Chr12	15189679	A-C	Hetero	INTERGENIC
SBS	Chr12	22667881	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	827372	827374	2
Deletion	Chr4	909836	909848	12
Deletion	Chr5	1365001	1382000	16999	OsKitaake05g017100
Deletion	Chr7	2848775	2848776	1
Deletion	Chr8	11022832	11022833	1
Deletion	Chr10	17595411	17595423	12
Deletion	Chr5	21867251	21867255	4
Deletion	Chr7	21976534	21976536	2
Deletion	Chr11	23699448	23699449	1
Deletion	Chr3	25634636	25634638	2
Deletion	Chr3	25640922	25640926	4
Deletion	Chr2	28729517	28729521	4
Deletion	Chr6	29462000	29462004	4
Deletion	Chr3	36321034	36321035	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5838451	6204569
Inversion	Chr4	5838627	6204579
Inversion	Chr10	16303757	16448753	OsKitaake10g109800
Inversion	Chr10	16303762	16448753	OsKitaake10g109800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes