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Mutant Information

Mutant Name	FN2660-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2660-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19380381 G-A Hetero INTERGENIC
SBS Chr1 20057176 T-C Hetero INTERGENIC
SBS Chr1 21340702 G-T Homo INTERGENIC
SBS Chr1 28870647 G-A Hetero INTERGENIC
SBS Chr1 30123922 T-C Hetero INTRON
SBS Chr1 32888788 T-A Homo UTR_5_PRIME
SBS Chr2 19233399 G-A Homo INTERGENIC
SBS Chr3 13449810 C-A Homo INTRON
SBS Chr3 17251284 G-T Hetero INTERGENIC
SBS Chr3 24526605 A-G Hetero INTERGENIC
SBS Chr3 29464594 C-T Hetero INTERGENIC
SBS Chr3 34559663 G-A Hetero INTERGENIC
SBS Chr4 1366527 C-A Hetero INTERGENIC
SBS Chr4 8146349 C-T Homo INTERGENIC
SBS Chr4 13609576 T-A Homo INTERGENIC
SBS Chr4 20445416 C-G Homo SYNONYMOUS_CODING
SBS Chr4 34137451 G-T Hetero INTRON
SBS Chr5 9394112 T-C Hetero INTERGENIC
SBS Chr5 14106499 C-T Hetero INTERGENIC
SBS Chr5 16856001 C-T Hetero INTERGENIC
SBS Chr6 15570147 C-T Hetero INTERGENIC
SBS Chr7 4398645 T-C Hetero INTRON
SBS Chr7 4398646 C-T Hetero INTRON
SBS Chr7 8051834 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 10529590 G-C Hetero INTERGENIC
SBS Chr7 18790093 C-A Hetero INTERGENIC
SBS Chr8 12975518 T-C Homo INTERGENIC
SBS Chr8 14738314 G-T Hetero INTERGENIC
SBS Chr8 20107543 C-T Hetero INTERGENIC
SBS Chr8 21195251 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g159500
SBS Chr8 23145571 G-T Hetero INTRON
SBS Chr8 26608363 T-C Hetero INTERGENIC
SBS Chr8 27460033 G-A Homo INTERGENIC
SBS Chr9 6544854 G-A Homo INTERGENIC
SBS Chr9 6544856 A-T Homo INTERGENIC
SBS Chr9 10834439 T-C Homo NON_SYNONYMOUS_CODING OsKitaake09g067200
SBS Chr9 10834444 C-A Homo NON_SYNONYMOUS_CODING OsKitaake09g067200
SBS Chr9 14324083 G-A Homo INTERGENIC
SBS Chr9 18807110 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g149200
SBS Chr10 9221640 C-T Hetero INTERGENIC
SBS Chr11 22206107 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g175800
SBS Chr11 25470386 C-T Hetero INTERGENIC
SBS Chr12 308759 G-A Hetero INTERGENIC
SBS Chr12 10503989 G-A Hetero INTERGENIC
SBS Chr12 14100905 G-A Hetero INTERGENIC
SBS Chr12 14618905 G-A Hetero INTERGENIC
SBS Chr12 14713939 C-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 720473 720477 4
Deletion Chr2 2527560 2527565 5
Deletion Chr10 3746580 3746587 7
Deletion Chr5 3917053 3917067 14 OsKitaake05g047100
Deletion Chr8 12976001 12981000 4999
Deletion Chr6 21477876 21477878 2
Deletion Chr4 27686893 27686895 2
Deletion Chr1 31065001 31159000 93999 16
Deletion Chr2 36073796 36073798 2
Deletion Chr3 36430132 36430135 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13087880 13087883 2
Insertion Chr2 4741340 4741345 4
Insertion Chr6 3314139 3314142 2
Insertion Chr8 14598436 14598439 2
Insertion Chr8 29094505 29094508 2
Insertion Chr11 25150455 25150459 3

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3810028 Chr4 34793911
Translocation Chr7 10065714 Chr2 31710374 OsKitaake07g099200
Translocation Chr7 10069784 Chr2 31710298

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19380381	G-A	Hetero	INTERGENIC
SBS	Chr1	20057176	T-C	Hetero	INTERGENIC
SBS	Chr1	21340702	G-T	Homo	INTERGENIC
SBS	Chr1	28870647	G-A	Hetero	INTERGENIC
SBS	Chr1	30123922	T-C	Hetero	INTRON
SBS	Chr1	32888788	T-A	Homo	UTR_5_PRIME
SBS	Chr2	19233399	G-A	Homo	INTERGENIC
SBS	Chr3	13449810	C-A	Homo	INTRON
SBS	Chr3	17251284	G-T	Hetero	INTERGENIC
SBS	Chr3	24526605	A-G	Hetero	INTERGENIC
SBS	Chr3	29464594	C-T	Hetero	INTERGENIC
SBS	Chr3	34559663	G-A	Hetero	INTERGENIC
SBS	Chr4	1366527	C-A	Hetero	INTERGENIC
SBS	Chr4	8146349	C-T	Homo	INTERGENIC
SBS	Chr4	13609576	T-A	Homo	INTERGENIC
SBS	Chr4	20445416	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr4	34137451	G-T	Hetero	INTRON
SBS	Chr5	9394112	T-C	Hetero	INTERGENIC
SBS	Chr5	14106499	C-T	Hetero	INTERGENIC
SBS	Chr5	16856001	C-T	Hetero	INTERGENIC
SBS	Chr6	15570147	C-T	Hetero	INTERGENIC
SBS	Chr7	4398645	T-C	Hetero	INTRON
SBS	Chr7	4398646	C-T	Hetero	INTRON
SBS	Chr7	8051834	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	10529590	G-C	Hetero	INTERGENIC
SBS	Chr7	18790093	C-A	Hetero	INTERGENIC
SBS	Chr8	12975518	T-C	Homo	INTERGENIC
SBS	Chr8	14738314	G-T	Hetero	INTERGENIC
SBS	Chr8	20107543	C-T	Hetero	INTERGENIC
SBS	Chr8	21195251	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g159500
SBS	Chr8	23145571	G-T	Hetero	INTRON
SBS	Chr8	26608363	T-C	Hetero	INTERGENIC
SBS	Chr8	27460033	G-A	Homo	INTERGENIC
SBS	Chr9	6544854	G-A	Homo	INTERGENIC
SBS	Chr9	6544856	A-T	Homo	INTERGENIC
SBS	Chr9	10834439	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g067200
SBS	Chr9	10834444	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g067200
SBS	Chr9	14324083	G-A	Homo	INTERGENIC
SBS	Chr9	18807110	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g149200
SBS	Chr10	9221640	C-T	Hetero	INTERGENIC
SBS	Chr11	22206107	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g175800
SBS	Chr11	25470386	C-T	Hetero	INTERGENIC
SBS	Chr12	308759	G-A	Hetero	INTERGENIC
SBS	Chr12	10503989	G-A	Hetero	INTERGENIC
SBS	Chr12	14100905	G-A	Hetero	INTERGENIC
SBS	Chr12	14618905	G-A	Hetero	INTERGENIC
SBS	Chr12	14713939	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	720473	720477	4
Deletion	Chr2	2527560	2527565	5
Deletion	Chr10	3746580	3746587	7
Deletion	Chr5	3917053	3917067	14	OsKitaake05g047100
Deletion	Chr8	12976001	12981000	4999
Deletion	Chr6	21477876	21477878	2
Deletion	Chr4	27686893	27686895	2
Deletion	Chr1	31065001	31159000	93999	16
Deletion	Chr2	36073796	36073798	2
Deletion	Chr3	36430132	36430135	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3810028	Chr4	34793911
Translocation	Chr7	10065714	Chr2	31710374	OsKitaake07g099200
Translocation	Chr7	10069784	Chr2	31710298

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes