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Mutant Information

Mutant Name	FN2661-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2661-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6452419 C-T Hetero INTERGENIC
SBS Chr1 13756609 A-G Hetero INTERGENIC
SBS Chr1 19400424 A-G Hetero INTERGENIC
SBS Chr1 38186106 G-T Homo INTRON
SBS Chr2 15512917 G-A Hetero INTERGENIC
SBS Chr2 35950599 C-T Hetero INTERGENIC
SBS Chr3 30626130 G-A Hetero INTRON
SBS Chr3 34588499 T-G Hetero INTERGENIC
SBS Chr4 1837318 T-C Homo INTRON
SBS Chr4 18453993 C-T Hetero INTERGENIC
SBS Chr4 21744619 G-A Hetero INTRON
SBS Chr4 27650953 T-A Homo INTERGENIC
SBS Chr5 19120240 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g149400
SBS Chr5 26957742 A-G Hetero INTRON
SBS Chr6 6619629 A-T Hetero INTRON
SBS Chr6 6619630 C-T Hetero INTRON
SBS Chr6 9600194 C-T Hetero INTRON
SBS Chr6 11277673 T-C Hetero INTERGENIC
SBS Chr6 17123801 A-G Homo INTERGENIC
SBS Chr7 1348215 G-A Hetero INTRON
SBS Chr7 17155726 G-A Hetero INTERGENIC
SBS Chr8 3297794 C-T Hetero INTERGENIC
SBS Chr8 26895385 C-T Hetero INTERGENIC
SBS Chr9 3402931 A-T Hetero INTERGENIC
SBS Chr9 10266165 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g063300
SBS Chr9 18315240 G-T Hetero INTERGENIC
SBS Chr9 18315241 C-T Hetero INTERGENIC
SBS Chr9 21967394 G-A Hetero INTRON
SBS Chr10 8151754 G-A Hetero INTERGENIC
SBS Chr10 9963748 A-T Hetero INTERGENIC
SBS Chr10 14314873 C-A Hetero INTERGENIC
SBS Chr10 23682854 C-A Hetero INTERGENIC
SBS Chr11 3597480 T-A Homo SYNONYMOUS_CODING
SBS Chr11 8913452 G-A Hetero INTERGENIC
SBS Chr11 9061499 A-C Hetero INTRON
SBS Chr11 18183386 C-T Hetero INTERGENIC
SBS Chr11 23580509 T-A Homo INTERGENIC
SBS Chr12 1263052 A-C Homo UTR_5_PRIME
SBS Chr12 3632063 T-C Homo INTERGENIC
SBS Chr12 6994516 G-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1124923 1124943 20
Deletion Chr4 1225942 1225948 6
Deletion Chr2 4675839 4675846 7
Deletion Chr1 9780569 9780576 7
Deletion Chr4 9981891 9981892 1
Deletion Chr5 10529986 10529989 3
Deletion Chr3 11912029 11912078 49
Deletion Chr3 15729286 15729288 2
Deletion Chr6 20514979 20514983 4
Deletion Chr11 25382764 25382766 2
Deletion Chr11 25436972 25436998 26
Deletion Chr8 25695854 25695868 14 OsKitaake08g203600
Deletion Chr8 26077323 26077324 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43148451 43148459 7
Insertion Chr3 29181563 29181567 3
Insertion Chr9 17379605 17379610 4

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 4148302 4283561
Inversion Chr4 4148308 4283715
Inversion Chr5 6607522 6792488 OsKitaake05g066700
Inversion Chr5 6607543 6792491 OsKitaake05g066700
Inversion Chr4 33478690 34331203 OsKitaake04g275400
Inversion Chr4 33478701 34331215 OsKitaake04g275400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6452419	C-T	Hetero	INTERGENIC
SBS	Chr1	13756609	A-G	Hetero	INTERGENIC
SBS	Chr1	19400424	A-G	Hetero	INTERGENIC
SBS	Chr1	38186106	G-T	Homo	INTRON
SBS	Chr2	15512917	G-A	Hetero	INTERGENIC
SBS	Chr2	35950599	C-T	Hetero	INTERGENIC
SBS	Chr3	30626130	G-A	Hetero	INTRON
SBS	Chr3	34588499	T-G	Hetero	INTERGENIC
SBS	Chr4	1837318	T-C	Homo	INTRON
SBS	Chr4	18453993	C-T	Hetero	INTERGENIC
SBS	Chr4	21744619	G-A	Hetero	INTRON
SBS	Chr4	27650953	T-A	Homo	INTERGENIC
SBS	Chr5	19120240	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g149400
SBS	Chr5	26957742	A-G	Hetero	INTRON
SBS	Chr6	6619629	A-T	Hetero	INTRON
SBS	Chr6	6619630	C-T	Hetero	INTRON
SBS	Chr6	9600194	C-T	Hetero	INTRON
SBS	Chr6	11277673	T-C	Hetero	INTERGENIC
SBS	Chr6	17123801	A-G	Homo	INTERGENIC
SBS	Chr7	1348215	G-A	Hetero	INTRON
SBS	Chr7	17155726	G-A	Hetero	INTERGENIC
SBS	Chr8	3297794	C-T	Hetero	INTERGENIC
SBS	Chr8	26895385	C-T	Hetero	INTERGENIC
SBS	Chr9	3402931	A-T	Hetero	INTERGENIC
SBS	Chr9	10266165	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g063300
SBS	Chr9	18315240	G-T	Hetero	INTERGENIC
SBS	Chr9	18315241	C-T	Hetero	INTERGENIC
SBS	Chr9	21967394	G-A	Hetero	INTRON
SBS	Chr10	8151754	G-A	Hetero	INTERGENIC
SBS	Chr10	9963748	A-T	Hetero	INTERGENIC
SBS	Chr10	14314873	C-A	Hetero	INTERGENIC
SBS	Chr10	23682854	C-A	Hetero	INTERGENIC
SBS	Chr11	3597480	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	8913452	G-A	Hetero	INTERGENIC
SBS	Chr11	9061499	A-C	Hetero	INTRON
SBS	Chr11	18183386	C-T	Hetero	INTERGENIC
SBS	Chr11	23580509	T-A	Homo	INTERGENIC
SBS	Chr12	1263052	A-C	Homo	UTR_5_PRIME
SBS	Chr12	3632063	T-C	Homo	INTERGENIC
SBS	Chr12	6994516	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1124923	1124943	20
Deletion	Chr4	1225942	1225948	6
Deletion	Chr2	4675839	4675846	7
Deletion	Chr1	9780569	9780576	7
Deletion	Chr4	9981891	9981892	1
Deletion	Chr5	10529986	10529989	3
Deletion	Chr3	11912029	11912078	49
Deletion	Chr3	15729286	15729288	2
Deletion	Chr6	20514979	20514983	4
Deletion	Chr11	25382764	25382766	2
Deletion	Chr11	25436972	25436998	26
Deletion	Chr8	25695854	25695868	14	OsKitaake08g203600
Deletion	Chr8	26077323	26077324	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4148302	4283561
Inversion	Chr4	4148308	4283715
Inversion	Chr5	6607522	6792488	OsKitaake05g066700
Inversion	Chr5	6607543	6792491	OsKitaake05g066700
Inversion	Chr4	33478690	34331203	OsKitaake04g275400
Inversion	Chr4	33478701	34331215	OsKitaake04g275400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes