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Mutant Information

Mutant Name	FN2661-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2661-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13756609 A-G Hetero INTERGENIC
SBS Chr1 30104837 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g296400
SBS Chr1 38186106 G-T Homo INTRON
SBS Chr3 18793681 T-C Hetero INTERGENIC
SBS Chr3 26960671 C-T Hetero INTERGENIC
SBS Chr3 30626130 G-A Hetero INTRON
SBS Chr3 34588499 T-G Hetero INTERGENIC
SBS Chr4 1837318 T-C Homo INTRON
SBS Chr4 18453993 C-T Hetero INTERGENIC
SBS Chr4 27650953 T-A Homo INTERGENIC
SBS Chr5 8058123 C-T Hetero INTERGENIC
SBS Chr5 19120240 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g149400
SBS Chr5 26957742 A-G Hetero INTRON
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 3918794 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g054600
SBS Chr6 17123801 A-G Homo INTERGENIC
SBS Chr7 14527974 G-A Hetero INTERGENIC
SBS Chr7 17155726 G-A Hetero INTERGENIC
SBS Chr8 8273452 C-T Homo INTERGENIC
SBS Chr8 16575363 G-A Hetero INTERGENIC
SBS Chr8 19398324 G-T Hetero INTERGENIC
SBS Chr8 26895385 C-T Hetero INTERGENIC
SBS Chr9 3402931 A-T Hetero INTERGENIC
SBS Chr9 10266165 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g063300
SBS Chr9 18315240 G-T Hetero INTERGENIC
SBS Chr9 18315241 C-T Hetero INTERGENIC
SBS Chr10 4353483 G-A Hetero INTERGENIC
SBS Chr10 8151754 G-A Hetero INTERGENIC
SBS Chr10 9963748 A-T Hetero INTERGENIC
SBS Chr10 14314873 C-A Hetero INTERGENIC
SBS Chr10 23682854 C-A Hetero INTERGENIC
SBS Chr11 3597480 T-A Homo SYNONYMOUS_CODING
SBS Chr11 8913452 G-A Hetero INTERGENIC
SBS Chr11 9061499 A-C Hetero INTRON
SBS Chr11 10555243 G-T Hetero INTERGENIC
SBS Chr11 16651416 A-T Hetero INTERGENIC
SBS Chr11 20457510 A-T Hetero INTERGENIC
SBS Chr11 23580509 T-A Homo INTERGENIC
SBS Chr12 1263052 A-C Homo UTR_5_PRIME
SBS Chr12 3632063 T-C Homo INTERGENIC
SBS Chr12 6994516 G-A Homo INTERGENIC
SBS Chr12 11134910 A-C Hetero INTERGENIC
SBS Chr12 23336408 T-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1124923 1124943 20
Deletion Chr4 1225942 1225948 6
Deletion Chr12 3069475 3069483 8
Deletion Chr2 4675839 4675846 7
Deletion Chr10 5135594 5135596 2
Deletion Chr1 9780569 9780576 7
Deletion Chr4 9981891 9981892 1
Deletion Chr3 15729286 15729288 2
Deletion Chr3 18818033 18818036 3
Deletion Chr6 20514979 20514983 4
Deletion Chr7 24485001 24498000 12999 OsKitaake07g218080
Deletion Chr11 25382764 25382766 2
Deletion Chr11 25436972 25436998 26
Deletion Chr8 25695854 25695868 14 OsKitaake08g203600
Deletion Chr8 26077323 26077324 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 20034084 20034088 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 4148302 4283561
Inversion Chr4 4148308 4283719
Inversion Chr5 6607522 6792488 OsKitaake05g066700
Inversion Chr5 6607543 6792491 OsKitaake05g066700
Inversion Chr4 33478690 34331203 OsKitaake04g275400
Inversion Chr4 33478701 34331215 OsKitaake04g275400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13756609	A-G	Hetero	INTERGENIC
SBS	Chr1	30104837	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g296400
SBS	Chr1	38186106	G-T	Homo	INTRON
SBS	Chr3	18793681	T-C	Hetero	INTERGENIC
SBS	Chr3	26960671	C-T	Hetero	INTERGENIC
SBS	Chr3	30626130	G-A	Hetero	INTRON
SBS	Chr3	34588499	T-G	Hetero	INTERGENIC
SBS	Chr4	1837318	T-C	Homo	INTRON
SBS	Chr4	18453993	C-T	Hetero	INTERGENIC
SBS	Chr4	27650953	T-A	Homo	INTERGENIC
SBS	Chr5	8058123	C-T	Hetero	INTERGENIC
SBS	Chr5	19120240	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g149400
SBS	Chr5	26957742	A-G	Hetero	INTRON
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	3918794	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g054600
SBS	Chr6	17123801	A-G	Homo	INTERGENIC
SBS	Chr7	14527974	G-A	Hetero	INTERGENIC
SBS	Chr7	17155726	G-A	Hetero	INTERGENIC
SBS	Chr8	8273452	C-T	Homo	INTERGENIC
SBS	Chr8	16575363	G-A	Hetero	INTERGENIC
SBS	Chr8	19398324	G-T	Hetero	INTERGENIC
SBS	Chr8	26895385	C-T	Hetero	INTERGENIC
SBS	Chr9	3402931	A-T	Hetero	INTERGENIC
SBS	Chr9	10266165	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g063300
SBS	Chr9	18315240	G-T	Hetero	INTERGENIC
SBS	Chr9	18315241	C-T	Hetero	INTERGENIC
SBS	Chr10	4353483	G-A	Hetero	INTERGENIC
SBS	Chr10	8151754	G-A	Hetero	INTERGENIC
SBS	Chr10	9963748	A-T	Hetero	INTERGENIC
SBS	Chr10	14314873	C-A	Hetero	INTERGENIC
SBS	Chr10	23682854	C-A	Hetero	INTERGENIC
SBS	Chr11	3597480	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	8913452	G-A	Hetero	INTERGENIC
SBS	Chr11	9061499	A-C	Hetero	INTRON
SBS	Chr11	10555243	G-T	Hetero	INTERGENIC
SBS	Chr11	16651416	A-T	Hetero	INTERGENIC
SBS	Chr11	20457510	A-T	Hetero	INTERGENIC
SBS	Chr11	23580509	T-A	Homo	INTERGENIC
SBS	Chr12	1263052	A-C	Homo	UTR_5_PRIME
SBS	Chr12	3632063	T-C	Homo	INTERGENIC
SBS	Chr12	6994516	G-A	Homo	INTERGENIC
SBS	Chr12	11134910	A-C	Hetero	INTERGENIC
SBS	Chr12	23336408	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1124923	1124943	20
Deletion	Chr4	1225942	1225948	6
Deletion	Chr12	3069475	3069483	8
Deletion	Chr2	4675839	4675846	7
Deletion	Chr10	5135594	5135596	2
Deletion	Chr1	9780569	9780576	7
Deletion	Chr4	9981891	9981892	1
Deletion	Chr3	15729286	15729288	2
Deletion	Chr3	18818033	18818036	3
Deletion	Chr6	20514979	20514983	4
Deletion	Chr7	24485001	24498000	12999	OsKitaake07g218080
Deletion	Chr11	25382764	25382766	2
Deletion	Chr11	25436972	25436998	26
Deletion	Chr8	25695854	25695868	14	OsKitaake08g203600
Deletion	Chr8	26077323	26077324	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4148302	4283561
Inversion	Chr4	4148308	4283719
Inversion	Chr5	6607522	6792488	OsKitaake05g066700
Inversion	Chr5	6607543	6792491	OsKitaake05g066700
Inversion	Chr4	33478690	34331203	OsKitaake04g275400
Inversion	Chr4	33478701	34331215	OsKitaake04g275400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes