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Mutant Information

Mutant Name	FN2662-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2662-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18220403 C-T Hetero INTERGENIC
SBS Chr1 24038257 G-T Hetero INTERGENIC
SBS Chr1 25578273 T-C Hetero INTERGENIC
SBS Chr1 26192289 T-A Hetero INTERGENIC
SBS Chr1 26765342 T-A Hetero INTERGENIC
SBS Chr1 26765343 C-T Hetero INTERGENIC
SBS Chr1 26765345 C-T Hetero INTERGENIC
SBS Chr1 33148387 C-T Homo INTERGENIC
SBS Chr1 38687868 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 38687869 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g413500
SBS Chr2 1429926 A-T Hetero INTRON
SBS Chr2 5729035 G-A Hetero INTERGENIC
SBS Chr2 13364716 T-C Hetero INTERGENIC
SBS Chr3 8202219 T-A Hetero INTERGENIC
SBS Chr3 9706930 G-T Hetero INTERGENIC
SBS Chr3 16312519 G-A Hetero INTERGENIC
SBS Chr3 22093175 G-A Hetero INTRON
SBS Chr4 8271507 C-T Hetero INTERGENIC
SBS Chr4 12183945 A-T Hetero INTERGENIC
SBS Chr4 12830536 C-T Hetero INTERGENIC
SBS Chr4 13467274 C-T Hetero INTERGENIC
SBS Chr4 20950709 G-A Hetero INTERGENIC
SBS Chr4 21238964 C-T Homo INTERGENIC
SBS Chr4 21878085 A-G Homo INTERGENIC
SBS Chr5 1220389 G-T Homo INTERGENIC
SBS Chr5 7944888 G-A Homo INTERGENIC
SBS Chr5 9988621 T-C Hetero INTERGENIC
SBS Chr5 12062300 C-T Hetero INTERGENIC
SBS Chr5 20146531 C-T Hetero INTRON
SBS Chr5 24916869 G-A Homo INTERGENIC
SBS Chr6 4126943 A-G Hetero INTERGENIC
SBS Chr6 23257580 T-C Hetero INTERGENIC
SBS Chr6 25286729 G-A Hetero INTERGENIC
SBS Chr7 1413008 C-A Hetero INTERGENIC
SBS Chr7 2550004 G-A Hetero INTERGENIC
SBS Chr7 12876978 G-A Hetero INTERGENIC
SBS Chr7 19764498 C-G Hetero UTR_3_PRIME
SBS Chr7 26226561 C-T Hetero INTERGENIC
SBS Chr8 7500386 T-A Hetero INTERGENIC
SBS Chr8 7973242 C-A Hetero INTERGENIC
SBS Chr8 15234928 C-T Hetero INTRON
SBS Chr9 3986787 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Hetero INTERGENIC
SBS Chr10 5291964 T-G Hetero INTERGENIC
SBS Chr10 20069088 A-C Hetero INTERGENIC
SBS Chr10 20802499 C-G Hetero INTRON
SBS Chr10 23471601 G-C Hetero INTRON
SBS Chr11 2295660 C-T Homo INTERGENIC
SBS Chr11 4136775 A-G Homo INTERGENIC
SBS Chr11 24573053 G-A Hetero STOP_GAINED OsKitaake11g198400
SBS Chr11 26853185 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g218400
SBS Chr12 5127067 G-T Hetero UTR_5_PRIME
SBS Chr12 26093231 A-G Homo NON_SYNONYMOUS_CODING OsKitaake12g215900

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 98990 98992 2
Deletion Chr11 4843250 4843255 5
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr3 8622169 8622171 2
Deletion Chr11 12818325 12818340 15
Deletion Chr5 15773001 16045000 271999 14
Deletion Chr12 16384756 16384759 3
Deletion Chr7 20977554 20977558 4 OsKitaake07g173100
Deletion Chr8 21533974 21533976 2
Deletion Chr3 23540989 23541001 12
Deletion Chr12 25017951 25017953 2
Deletion Chr2 31986704 31986722 18

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22814123 22814126 2
Insertion Chr9 564320 564324 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6389364 6527750
Inversion Chr5 10696573 10707926 OsKitaake05g091900
Inversion Chr5 10696585 10707944 OsKitaake05g091900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 15969285 Chr2 31377819
Translocation Chr5 15970104 Chr2 31377816
Translocation Chr11 24898423 Chr1 35311917

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18220403	C-T	Hetero	INTERGENIC
SBS	Chr1	24038257	G-T	Hetero	INTERGENIC
SBS	Chr1	25578273	T-C	Hetero	INTERGENIC
SBS	Chr1	26192289	T-A	Hetero	INTERGENIC
SBS	Chr1	26765342	T-A	Hetero	INTERGENIC
SBS	Chr1	26765343	C-T	Hetero	INTERGENIC
SBS	Chr1	26765345	C-T	Hetero	INTERGENIC
SBS	Chr1	33148387	C-T	Homo	INTERGENIC
SBS	Chr1	38687868	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	38687869	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g413500
SBS	Chr2	1429926	A-T	Hetero	INTRON
SBS	Chr2	5729035	G-A	Hetero	INTERGENIC
SBS	Chr2	13364716	T-C	Hetero	INTERGENIC
SBS	Chr3	8202219	T-A	Hetero	INTERGENIC
SBS	Chr3	9706930	G-T	Hetero	INTERGENIC
SBS	Chr3	16312519	G-A	Hetero	INTERGENIC
SBS	Chr3	22093175	G-A	Hetero	INTRON
SBS	Chr4	8271507	C-T	Hetero	INTERGENIC
SBS	Chr4	12183945	A-T	Hetero	INTERGENIC
SBS	Chr4	12830536	C-T	Hetero	INTERGENIC
SBS	Chr4	13467274	C-T	Hetero	INTERGENIC
SBS	Chr4	20950709	G-A	Hetero	INTERGENIC
SBS	Chr4	21238964	C-T	Homo	INTERGENIC
SBS	Chr4	21878085	A-G	Homo	INTERGENIC
SBS	Chr5	1220389	G-T	Homo	INTERGENIC
SBS	Chr5	7944888	G-A	Homo	INTERGENIC
SBS	Chr5	9988621	T-C	Hetero	INTERGENIC
SBS	Chr5	12062300	C-T	Hetero	INTERGENIC
SBS	Chr5	20146531	C-T	Hetero	INTRON
SBS	Chr5	24916869	G-A	Homo	INTERGENIC
SBS	Chr6	4126943	A-G	Hetero	INTERGENIC
SBS	Chr6	23257580	T-C	Hetero	INTERGENIC
SBS	Chr6	25286729	G-A	Hetero	INTERGENIC
SBS	Chr7	1413008	C-A	Hetero	INTERGENIC
SBS	Chr7	2550004	G-A	Hetero	INTERGENIC
SBS	Chr7	12876978	G-A	Hetero	INTERGENIC
SBS	Chr7	19764498	C-G	Hetero	UTR_3_PRIME
SBS	Chr7	26226561	C-T	Hetero	INTERGENIC
SBS	Chr8	7500386	T-A	Hetero	INTERGENIC
SBS	Chr8	7973242	C-A	Hetero	INTERGENIC
SBS	Chr8	15234928	C-T	Hetero	INTRON
SBS	Chr9	3986787	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Hetero	INTERGENIC
SBS	Chr10	5291964	T-G	Hetero	INTERGENIC
SBS	Chr10	20069088	A-C	Hetero	INTERGENIC
SBS	Chr10	20802499	C-G	Hetero	INTRON
SBS	Chr10	23471601	G-C	Hetero	INTRON
SBS	Chr11	2295660	C-T	Homo	INTERGENIC
SBS	Chr11	4136775	A-G	Homo	INTERGENIC
SBS	Chr11	24573053	G-A	Hetero	STOP_GAINED	OsKitaake11g198400
SBS	Chr11	26853185	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g218400
SBS	Chr12	5127067	G-T	Hetero	UTR_5_PRIME
SBS	Chr12	26093231	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g215900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	98990	98992	2
Deletion	Chr11	4843250	4843255	5
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr3	8622169	8622171	2
Deletion	Chr11	12818325	12818340	15
Deletion	Chr5	15773001	16045000	271999	14
Deletion	Chr12	16384756	16384759	3
Deletion	Chr7	20977554	20977558	4	OsKitaake07g173100
Deletion	Chr8	21533974	21533976	2
Deletion	Chr3	23540989	23541001	12
Deletion	Chr12	25017951	25017953	2
Deletion	Chr2	31986704	31986722	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6389364	6527750
Inversion	Chr5	10696573	10707926	OsKitaake05g091900
Inversion	Chr5	10696585	10707944	OsKitaake05g091900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes