Search Kitaake

Mutant Information

Mutant Name	FN2663-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2663-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41130998 C-G Hetero INTERGENIC
SBS Chr2 4428294 C-T Hetero INTERGENIC
SBS Chr2 9847652 C-T Hetero INTRON
SBS Chr3 11532546 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g156800
SBS Chr3 13196765 G-A Hetero INTERGENIC
SBS Chr3 13381460 G-A Hetero INTRON
SBS Chr3 18418498 G-C Hetero INTERGENIC
SBS Chr3 21293167 C-T Hetero INTERGENIC
SBS Chr3 29873178 G-T Homo UTR_3_PRIME
SBS Chr3 34343676 C-T Hetero INTRON
SBS Chr3 34892618 G-T Homo INTERGENIC
SBS Chr4 431667 T-C Homo INTERGENIC
SBS Chr4 17110191 G-T Hetero INTERGENIC
SBS Chr4 17930553 G-A Hetero INTERGENIC
SBS Chr4 17933736 A-G Hetero INTERGENIC
SBS Chr4 31107150 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g242400
SBS Chr4 31107151 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g242400
SBS Chr4 31374487 A-G Hetero UTR_3_PRIME
SBS Chr5 16221112 G-A Homo INTERGENIC
SBS Chr6 11410317 T-A Hetero INTERGENIC
SBS Chr6 11410318 A-T Hetero INTERGENIC
SBS Chr6 16935108 C-T Hetero INTERGENIC
SBS Chr6 19633752 C-A Hetero INTRON
SBS Chr6 21984699 C-T Hetero INTRON
SBS Chr6 24191344 C-G Hetero INTERGENIC
SBS Chr6 25400649 G-A Homo INTERGENIC
SBS Chr7 16237242 C-T Homo INTERGENIC
SBS Chr8 5232237 G-T Homo INTRON
SBS Chr8 16873443 C-T Hetero INTERGENIC
SBS Chr10 4065295 T-C Hetero INTERGENIC
SBS Chr10 8459459 C-T Homo INTERGENIC
SBS Chr10 8459460 T-C Homo INTERGENIC
SBS Chr10 17060982 C-G Hetero INTERGENIC
SBS Chr11 21391989 A-C Hetero INTERGENIC
SBS Chr11 21956078 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g173800
SBS Chr11 22108587 C-T Hetero INTERGENIC
SBS Chr11 22108591 G-T Hetero INTERGENIC
SBS Chr11 22603216 G-T Hetero INTERGENIC
SBS Chr11 22603235 G-T Hetero INTERGENIC
SBS Chr12 229247 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g002700
SBS Chr12 1895278 C-T Hetero INTRON
SBS Chr12 11375917 A-T Hetero INTERGENIC
SBS Chr12 12085800 T-A Hetero INTERGENIC
SBS Chr12 13968482 C-T Homo INTERGENIC
SBS Chr12 21069320 A-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 609385 609407 22
Deletion Chr8 8589806 8589810 4
Deletion Chr12 9197323 9197338 15
Deletion Chr11 11459618 11459624 6
Deletion Chr9 12365001 12632000 266999 24
Deletion Chr1 14695082 14695088 6
Deletion Chr7 14839603 14839606 3
Deletion Chr10 17019595 17019599 4
Deletion Chr10 17956762 17956783 21
Deletion Chr10 19067003 19067004 1 OsKitaake10g137000
Deletion Chr11 23347001 23361000 13999 OsKitaake11g186100
Deletion Chr6 26468628 26468634 6
Deletion Chr3 32316975 32316978 3
Deletion Chr2 32372240 32372245 5
Deletion Chr2 36024937 36024939 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 30616456 30616462 5
Insertion Chr9 14589319 14589322 2
Insertion Chr11 19899294 19899297 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 23345877 23346562
Inversion Chr11 23345882 23379337

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41130998	C-G	Hetero	INTERGENIC
SBS	Chr2	4428294	C-T	Hetero	INTERGENIC
SBS	Chr2	9847652	C-T	Hetero	INTRON
SBS	Chr3	11532546	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g156800
SBS	Chr3	13196765	G-A	Hetero	INTERGENIC
SBS	Chr3	13381460	G-A	Hetero	INTRON
SBS	Chr3	18418498	G-C	Hetero	INTERGENIC
SBS	Chr3	21293167	C-T	Hetero	INTERGENIC
SBS	Chr3	29873178	G-T	Homo	UTR_3_PRIME
SBS	Chr3	34343676	C-T	Hetero	INTRON
SBS	Chr3	34892618	G-T	Homo	INTERGENIC
SBS	Chr4	431667	T-C	Homo	INTERGENIC
SBS	Chr4	17110191	G-T	Hetero	INTERGENIC
SBS	Chr4	17930553	G-A	Hetero	INTERGENIC
SBS	Chr4	17933736	A-G	Hetero	INTERGENIC
SBS	Chr4	31107150	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g242400
SBS	Chr4	31107151	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g242400
SBS	Chr4	31374487	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	16221112	G-A	Homo	INTERGENIC
SBS	Chr6	11410317	T-A	Hetero	INTERGENIC
SBS	Chr6	11410318	A-T	Hetero	INTERGENIC
SBS	Chr6	16935108	C-T	Hetero	INTERGENIC
SBS	Chr6	19633752	C-A	Hetero	INTRON
SBS	Chr6	21984699	C-T	Hetero	INTRON
SBS	Chr6	24191344	C-G	Hetero	INTERGENIC
SBS	Chr6	25400649	G-A	Homo	INTERGENIC
SBS	Chr7	16237242	C-T	Homo	INTERGENIC
SBS	Chr8	5232237	G-T	Homo	INTRON
SBS	Chr8	16873443	C-T	Hetero	INTERGENIC
SBS	Chr10	4065295	T-C	Hetero	INTERGENIC
SBS	Chr10	8459459	C-T	Homo	INTERGENIC
SBS	Chr10	8459460	T-C	Homo	INTERGENIC
SBS	Chr10	17060982	C-G	Hetero	INTERGENIC
SBS	Chr11	21391989	A-C	Hetero	INTERGENIC
SBS	Chr11	21956078	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g173800
SBS	Chr11	22108587	C-T	Hetero	INTERGENIC
SBS	Chr11	22108591	G-T	Hetero	INTERGENIC
SBS	Chr11	22603216	G-T	Hetero	INTERGENIC
SBS	Chr11	22603235	G-T	Hetero	INTERGENIC
SBS	Chr12	229247	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g002700
SBS	Chr12	1895278	C-T	Hetero	INTRON
SBS	Chr12	11375917	A-T	Hetero	INTERGENIC
SBS	Chr12	12085800	T-A	Hetero	INTERGENIC
SBS	Chr12	13968482	C-T	Homo	INTERGENIC
SBS	Chr12	21069320	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	609385	609407	22
Deletion	Chr8	8589806	8589810	4
Deletion	Chr12	9197323	9197338	15
Deletion	Chr11	11459618	11459624	6
Deletion	Chr9	12365001	12632000	266999	24
Deletion	Chr1	14695082	14695088	6
Deletion	Chr7	14839603	14839606	3
Deletion	Chr10	17019595	17019599	4
Deletion	Chr10	17956762	17956783	21
Deletion	Chr10	19067003	19067004	1	OsKitaake10g137000
Deletion	Chr11	23347001	23361000	13999	OsKitaake11g186100
Deletion	Chr6	26468628	26468634	6
Deletion	Chr3	32316975	32316978	3
Deletion	Chr2	32372240	32372245	5
Deletion	Chr2	36024937	36024939	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	23345877	23346562
Inversion	Chr11	23345882	23379337

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes