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| Mutant Information |
|---|
| Mutant Name | FN2663-S-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2663-S-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 28926420 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 41130998 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 4428294 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9847652 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 13196765 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13381460 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 29873178 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 34892618 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 431667 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 17110191 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17930553 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17933736 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 25447627 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31107150 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g242400 |
| SBS | Chr4 | 31107151 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g242400 |
| SBS | Chr5 | 16221112 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11410317 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11410318 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16935108 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19633752 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 21984699 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 24191344 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 25400649 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 16237242 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5232237 | G-T | Homo | INTRON | |
| SBS | Chr9 | 10383038 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 8459459 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8459460 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 17060982 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 21391989 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21956078 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g173800 |
| SBS | Chr11 | 22108587 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22108591 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13968482 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21069320 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 26826734 | C-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 8589806 | 8589810 | 4 | |
| Deletion | Chr12 | 9197323 | 9197338 | 15 | |
| Deletion | Chr11 | 11459618 | 11459624 | 6 | |
| Deletion | Chr9 | 12359001 | 12629000 | 269999 | 22 |
| Deletion | Chr1 | 14695082 | 14695088 | 6 | |
| Deletion | Chr7 | 14839603 | 14839606 | 3 | |
| Deletion | Chr10 | 17019595 | 17019599 | 4 | |
| Deletion | Chr11 | 23349001 | 23361000 | 11999 | OsKitaake11g186100 |
| Deletion | Chr6 | 26468628 | 26468634 | 6 | |
| Deletion | Chr5 | 30212669 | 30212670 | 1 | |
| Deletion | Chr3 | 32316975 | 32316978 | 3 | |
| Deletion | Chr2 | 32372240 | 32372245 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 30616456 | 30616462 | 5 | |
| Insertion | Chr9 | 14589319 | 14589322 | 2 | |
| Insertion | Chr10 | 20255741 | 20255744 | 2 | |
| Insertion | Chr10 | 5735714 | 5735716 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 23345877 | 23346562 | |
| Inversion | Chr11 | 23345882 | 23379337 |