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Mutant Information

Mutant Name	FN2665-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2665-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 56

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5762752	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	14833391	C-T	Hetero	INTERGENIC
SBS	Chr1	22600334	C-T	Hetero	INTERGENIC
SBS	Chr2	862381	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g012200
SBS	Chr2	2612105	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g037400
SBS	Chr2	5515686	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr2	6866076	A-T	Homo	INTERGENIC
SBS	Chr2	13447026	C-T	Hetero	INTRON
SBS	Chr2	25698026	T-A	Hetero	INTERGENIC
SBS	Chr3	5320724	G-T	Hetero	INTERGENIC
SBS	Chr3	19114151	C-G	Hetero	INTERGENIC
SBS	Chr3	20234835	G-A	Hetero	INTERGENIC
SBS	Chr3	26634808	A-C	Hetero	INTERGENIC
SBS	Chr3	28339241	C-T	Hetero	INTRON
SBS	Chr4	2839058	C-T	Homo	INTERGENIC
SBS	Chr4	8970591	C-T	Homo	INTERGENIC
SBS	Chr4	11940844	G-T	Hetero	INTERGENIC
SBS	Chr4	16716304	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	17701099	G-A	Hetero	INTERGENIC
SBS	Chr4	23503653	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	2709215	A-C	Hetero	INTERGENIC
SBS	Chr5	6102866	C-T	Hetero	INTERGENIC
SBS	Chr5	8913933	T-C	Hetero	INTERGENIC
SBS	Chr5	9514995	C-T	Hetero	INTERGENIC
SBS	Chr5	10296468	C-G	Hetero	INTERGENIC
SBS	Chr5	19000136	A-G	Hetero	INTERGENIC
SBS	Chr5	19970244	C-T	Hetero	INTERGENIC
SBS	Chr5	25034186	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	28088542	T-C	Hetero	INTRON
SBS	Chr6	8401242	C-T	Hetero	INTERGENIC
SBS	Chr6	14738114	C-T	Hetero	INTERGENIC
SBS	Chr6	20510128	A-G	Hetero	INTERGENIC
SBS	Chr6	28100182	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	14771154	C-T	Hetero	INTRON
SBS	Chr7	18858933	G-A	Hetero	INTERGENIC
SBS	Chr8	12107223	G-A	Hetero	INTERGENIC
SBS	Chr8	13453169	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	4308376	T-C	Hetero	INTERGENIC
SBS	Chr9	9334785	C-G	Homo	INTRON
SBS	Chr9	9334792	A-G	Homo	INTRON
SBS	Chr9	14382887	C-T	Hetero	INTRON
SBS	Chr9	21692726	A-T	Hetero	INTRON
SBS	Chr9	21692729	A-G	Hetero	INTRON
SBS	Chr10	664935	T-C	Hetero	INTERGENIC
SBS	Chr10	2399161	G-A	Hetero	INTERGENIC
SBS	Chr10	10227953	T-C	Hetero	INTERGENIC
SBS	Chr10	10227954	A-G	Hetero	INTERGENIC
SBS	Chr10	15787290	T-C	Hetero	INTERGENIC
SBS	Chr10	15787298	G-A	Hetero	INTERGENIC
SBS	Chr11	6026459	G-C	Hetero	INTERGENIC
SBS	Chr11	19856778	C-G	Hetero	INTRON
SBS	Chr11	20340088	G-A	Hetero	INTERGENIC
SBS	Chr12	2017103	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g031800
SBS	Chr12	9623750	G-A	Hetero	INTERGENIC
SBS	Chr12	19870969	C-T	Hetero	INTERGENIC
SBS	Chr12	23402099	G-A	Hetero	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	225341	225346	5
Deletion	Chr3	2856653	2856687	34
Deletion	Chr1	3135097	3135099	2
Deletion	Chr11	3963886	3963890	4
Deletion	Chr2	5417413	5417424	11	OsKitaake02g074300
Deletion	Chr3	5789999	5790009	10
Deletion	Chr10	8404400	8404402	2
Deletion	Chr3	9466480	9466504	24
Deletion	Chr9	10965819	10965830	11
Deletion	Chr8	11076190	11076191	1
Deletion	Chr7	12630316	12630317	1
Deletion	Chr7	14688816	14688818	2
Deletion	Chr5	14916001	14960000	43999	5
Deletion	Chr7	16847998	16848006	8
Deletion	Chr1	16851823	16851825	2
Deletion	Chr4	17199827	17199839	12
Deletion	Chr3	17697570	17697571	1
Deletion	Chr1	18316680	18316682	2
Deletion	Chr4	19617329	19617334	5
Deletion	Chr2	20238137	20238139	2	OsKitaake02g197400
Deletion	Chr7	20815456	20815464	8
Deletion	Chr5	23109312	23109315	3
Deletion	Chr5	23878265	23878270	5
Deletion	Chr3	24331001	24338000	6999	3
Deletion	Chr7	24482026	24482031	5
Deletion	Chr8	25009579	25009580	1
Deletion	Chr5	26222628	26222634	6
Deletion	Chr1	26975025	26975031	6
Deletion	Chr1	28300743	28300749	6
Deletion	Chr5	29379385	29379391	6
Deletion	Chr3	34617442	34617449	7
Deletion	Chr4	36693696	36693697	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr11	9626590	9626593	2
Insertion	Chr11	11146371	11146374	2
Insertion	Chr6	21477894	21477897	2
Insertion	Chr7	11992111	11992113	1

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	39587	Chr3	24330984	2
Translocation	Chr12	23437370	Chr3	24330464	2
Translocation	Chr6	25185001	Chr3	25843886	OsKitaake03g272800
Translocation	Chr6	25185363	Chr3	25843882	OsKitaake03g272800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes