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Mutant Information

Mutant Name	FN2667-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2667-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 125

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 987181 G-A Hetero INTRON
SBS Chr1 11500475 G-C Homo INTERGENIC
SBS Chr1 12221933 T-C Homo INTERGENIC
SBS Chr1 21787749 C-A Hetero INTERGENIC
SBS Chr1 23035350 C-G Hetero INTERGENIC
SBS Chr1 30291875 A-G Homo INTERGENIC
SBS Chr1 31384691 G-T Hetero INTERGENIC
SBS Chr1 33189105 A-T Hetero INTERGENIC
SBS Chr1 37278323 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g397600
SBS Chr2 8524473 G-T Hetero INTERGENIC
SBS Chr2 20747931 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 27456521 C-T Hetero INTERGENIC
SBS Chr2 32137025 G-C Hetero INTERGENIC
SBS Chr2 33169246 C-T Hetero INTERGENIC
SBS Chr2 33257938 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 9311498 A-G Hetero INTERGENIC
SBS Chr3 12121932 T-G Hetero INTRON
SBS Chr3 12574331 T-A Hetero INTERGENIC
SBS Chr3 14159620 A-G Hetero INTERGENIC
SBS Chr3 14678971 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g190900
SBS Chr3 15093562 C-T Hetero INTERGENIC
SBS Chr3 16680919 T-A Hetero INTERGENIC
SBS Chr3 16849002 G-A Hetero INTERGENIC
SBS Chr3 17364723 G-A Hetero INTERGENIC
SBS Chr3 37579295 G-A Hetero INTERGENIC
SBS Chr4 308931 A-G Hetero INTERGENIC
SBS Chr4 4855609 C-G Homo INTERGENIC
SBS Chr4 6915251 G-T Hetero INTERGENIC
SBS Chr4 9376149 C-T Hetero INTERGENIC
SBS Chr4 15760489 C-T Homo INTERGENIC
SBS Chr4 22869925 G-A Homo INTERGENIC
SBS Chr4 24159438 A-G Hetero INTRON
SBS Chr4 27648843 C-A Hetero INTERGENIC
SBS Chr4 30274412 C-A Hetero INTERGENIC
SBS Chr4 30309127 G-A Hetero INTERGENIC
SBS Chr5 317696 C-A Hetero INTRON
SBS Chr5 8524990 T-C Homo INTERGENIC
SBS Chr5 17439245 T-C Homo INTERGENIC
SBS Chr5 23533987 A-C Homo INTERGENIC
SBS Chr6 2441551 G-A Hetero UTR_3_PRIME
SBS Chr6 6974889 C-T Homo INTERGENIC
SBS Chr6 8557574 A-T Homo INTERGENIC
SBS Chr6 13229820 C-A Hetero INTERGENIC
SBS Chr6 13314632 C-T Hetero INTERGENIC
SBS Chr6 15136596 C-T Homo INTERGENIC
SBS Chr6 25227020 A-G Hetero INTERGENIC
SBS Chr6 30929492 A-G Homo UTR_3_PRIME
SBS Chr7 3549619 T-C Hetero INTRON
SBS Chr7 6554266 G-A Hetero INTERGENIC
SBS Chr7 9764493 C-T Hetero INTERGENIC
SBS Chr7 10491286 T-C Hetero INTERGENIC
SBS Chr7 11764628 A-T Hetero INTERGENIC
SBS Chr7 15177193 G-A Hetero INTERGENIC
SBS Chr8 13894841 T-A Hetero INTERGENIC
SBS Chr8 22164191 T-A Hetero INTERGENIC
SBS Chr8 25587503 C-A Hetero INTERGENIC
SBS Chr9 2734596 T-G Homo INTERGENIC
SBS Chr9 2896158 T-C Hetero INTERGENIC
SBS Chr9 3043961 G-T Hetero INTERGENIC
SBS Chr9 6880419 T-C Hetero INTERGENIC
SBS Chr9 14682315 G-T Hetero INTERGENIC
SBS Chr10 278104 G-A Homo INTERGENIC
SBS Chr10 4272135 G-T Hetero INTERGENIC
SBS Chr10 13471146 G-A Hetero INTERGENIC
SBS Chr10 16011629 T-C Hetero INTERGENIC
SBS Chr11 15276935 G-A Hetero INTERGENIC
SBS Chr11 18403501 G-T Hetero INTERGENIC
SBS Chr11 23121257 T-C Hetero INTERGENIC
SBS Chr11 23121271 G-A Hetero INTERGENIC
SBS Chr11 28792247 T-A Hetero INTRON
SBS Chr12 5072100 G-A Hetero INTERGENIC
SBS Chr12 5117831 G-A Hetero UTR_3_PRIME
SBS Chr12 11757547 G-A Hetero INTERGENIC
SBS Chr12 17840946 G-C Hetero INTERGENIC
SBS Chr1 987181 G-A Hetero INTRON
SBS Chr1 3243625 C-T Hetero INTERGENIC
SBS Chr1 11500475 G-C Homo INTERGENIC
SBS Chr1 12221933 T-C Homo INTERGENIC
SBS Chr1 30291875 A-G Homo INTERGENIC
SBS Chr2 20747931 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 27456521 C-T Hetero INTERGENIC
SBS Chr2 33169246 C-T Hetero INTERGENIC
SBS Chr3 9311498 A-G Hetero INTERGENIC
SBS Chr3 12121932 T-G Hetero INTRON
SBS Chr3 12574331 T-A Hetero INTERGENIC
SBS Chr3 13559084 T-A Hetero INTERGENIC
SBS Chr3 14159620 A-G Hetero INTERGENIC
SBS Chr3 14678971 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g190900
SBS Chr3 15093562 C-T Hetero INTERGENIC
SBS Chr3 16680919 T-A Hetero INTERGENIC
SBS Chr3 16849002 G-A Hetero INTERGENIC
SBS Chr4 308931 A-G Hetero INTERGENIC
SBS Chr4 4855609 C-G Homo INTERGENIC
SBS Chr4 15760489 C-T Homo INTERGENIC
SBS Chr4 22869925 G-A Homo INTERGENIC
SBS Chr4 25122448 G-A Hetero INTERGENIC
SBS Chr4 27808959 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 29066053 C-T Hetero INTERGENIC
SBS Chr5 8524990 T-C Homo INTERGENIC
SBS Chr5 17439245 T-C Homo INTERGENIC
SBS Chr5 23533987 A-C Homo INTERGENIC
SBS Chr6 2441551 G-A Hetero UTR_3_PRIME
SBS Chr6 6974889 C-T Homo INTERGENIC
SBS Chr6 8557574 A-T Homo INTERGENIC
SBS Chr6 15136596 C-T Homo INTERGENIC
SBS Chr6 30929492 A-G Homo UTR_3_PRIME
SBS Chr7 229306 C-T Hetero INTERGENIC
SBS Chr7 2792238 A-C Hetero INTRON
SBS Chr7 3549619 T-C Hetero INTRON
SBS Chr7 6554266 G-A Hetero INTERGENIC
SBS Chr7 12643915 C-G Hetero UTR_5_PRIME
SBS Chr7 15177193 G-A Hetero INTERGENIC
SBS Chr8 22164191 T-A Hetero INTERGENIC
SBS Chr9 2734596 T-G Homo INTERGENIC
SBS Chr9 2896158 T-C Hetero INTERGENIC
SBS Chr9 3043961 G-T Hetero INTERGENIC
SBS Chr9 13107623 A-G Hetero INTERGENIC
SBS Chr10 278104 G-A Homo INTERGENIC
SBS Chr10 13471146 G-A Hetero INTERGENIC
SBS Chr10 16011629 T-C Hetero INTERGENIC
SBS Chr11 21327674 G-A Hetero INTRON
SBS Chr11 29448278 A-T Hetero INTERGENIC
SBS Chr12 5117831 G-A Hetero UTR_3_PRIME
SBS Chr12 11757547 G-A Hetero INTERGENIC
SBS Chr12 17840946 G-C Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 539558 539560 2 2
Deletion Chr7 2278001 2742000 463999 37
Deletion Chr7 2281001 2742000 460999 37
Deletion Chr1 2486965 2486966 1 2
Deletion Chr12 2540047 2540051 4
Deletion Chr7 2757001 2772000 14999 OsKitaake07g035700
Deletion Chr11 3469470 3469488 18 2
Deletion Chr9 6944499 6944501 2 2
Deletion Chr10 11382123 11382134 11 2
Deletion Chr5 11508565 11508566 1
Deletion Chr3 13005035 13005037 2
Deletion Chr1 13222927 13222930 3 2
Deletion Chr10 13661334 13661340 6
Deletion Chr10 14171002 14171003 1
Deletion Chr4 20384644 20384648 4 2
Deletion Chr6 22029058 22029070 12
Deletion Chr4 24013326 24013339 13 2
Deletion Chr8 24824288 24824290 2
Deletion Chr11 25663152 25663158 6 2
Deletion Chr8 28689303 28689306 3
Deletion Chr2 34836722 34836730 8 2
Deletion Chr1 41475823 41475825 2 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 24559562 24559565 2
Insertion Chr8 9052760 9052763 2
Insertion Chr12 10016519 10016522 2
Insertion Chr2 36301216 36301220 3
Insertion Chr12 9500056 9500064 7
Insertion Chr11 3383179 3383181 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	987181	G-A	Hetero	INTRON
SBS	Chr1	11500475	G-C	Homo	INTERGENIC
SBS	Chr1	12221933	T-C	Homo	INTERGENIC
SBS	Chr1	21787749	C-A	Hetero	INTERGENIC
SBS	Chr1	23035350	C-G	Hetero	INTERGENIC
SBS	Chr1	30291875	A-G	Homo	INTERGENIC
SBS	Chr1	31384691	G-T	Hetero	INTERGENIC
SBS	Chr1	33189105	A-T	Hetero	INTERGENIC
SBS	Chr1	37278323	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g397600
SBS	Chr2	8524473	G-T	Hetero	INTERGENIC
SBS	Chr2	20747931	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	27456521	C-T	Hetero	INTERGENIC
SBS	Chr2	32137025	G-C	Hetero	INTERGENIC
SBS	Chr2	33169246	C-T	Hetero	INTERGENIC
SBS	Chr2	33257938	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9311498	A-G	Hetero	INTERGENIC
SBS	Chr3	12121932	T-G	Hetero	INTRON
SBS	Chr3	12574331	T-A	Hetero	INTERGENIC
SBS	Chr3	14159620	A-G	Hetero	INTERGENIC
SBS	Chr3	14678971	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g190900
SBS	Chr3	15093562	C-T	Hetero	INTERGENIC
SBS	Chr3	16680919	T-A	Hetero	INTERGENIC
SBS	Chr3	16849002	G-A	Hetero	INTERGENIC
SBS	Chr3	17364723	G-A	Hetero	INTERGENIC
SBS	Chr3	37579295	G-A	Hetero	INTERGENIC
SBS	Chr4	308931	A-G	Hetero	INTERGENIC
SBS	Chr4	4855609	C-G	Homo	INTERGENIC
SBS	Chr4	6915251	G-T	Hetero	INTERGENIC
SBS	Chr4	9376149	C-T	Hetero	INTERGENIC
SBS	Chr4	15760489	C-T	Homo	INTERGENIC
SBS	Chr4	22869925	G-A	Homo	INTERGENIC
SBS	Chr4	24159438	A-G	Hetero	INTRON
SBS	Chr4	27648843	C-A	Hetero	INTERGENIC
SBS	Chr4	30274412	C-A	Hetero	INTERGENIC
SBS	Chr4	30309127	G-A	Hetero	INTERGENIC
SBS	Chr5	317696	C-A	Hetero	INTRON
SBS	Chr5	8524990	T-C	Homo	INTERGENIC
SBS	Chr5	17439245	T-C	Homo	INTERGENIC
SBS	Chr5	23533987	A-C	Homo	INTERGENIC
SBS	Chr6	2441551	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	6974889	C-T	Homo	INTERGENIC
SBS	Chr6	8557574	A-T	Homo	INTERGENIC
SBS	Chr6	13229820	C-A	Hetero	INTERGENIC
SBS	Chr6	13314632	C-T	Hetero	INTERGENIC
SBS	Chr6	15136596	C-T	Homo	INTERGENIC
SBS	Chr6	25227020	A-G	Hetero	INTERGENIC
SBS	Chr6	30929492	A-G	Homo	UTR_3_PRIME
SBS	Chr7	3549619	T-C	Hetero	INTRON
SBS	Chr7	6554266	G-A	Hetero	INTERGENIC
SBS	Chr7	9764493	C-T	Hetero	INTERGENIC
SBS	Chr7	10491286	T-C	Hetero	INTERGENIC
SBS	Chr7	11764628	A-T	Hetero	INTERGENIC
SBS	Chr7	15177193	G-A	Hetero	INTERGENIC
SBS	Chr8	13894841	T-A	Hetero	INTERGENIC
SBS	Chr8	22164191	T-A	Hetero	INTERGENIC
SBS	Chr8	25587503	C-A	Hetero	INTERGENIC
SBS	Chr9	2734596	T-G	Homo	INTERGENIC
SBS	Chr9	2896158	T-C	Hetero	INTERGENIC
SBS	Chr9	3043961	G-T	Hetero	INTERGENIC
SBS	Chr9	6880419	T-C	Hetero	INTERGENIC
SBS	Chr9	14682315	G-T	Hetero	INTERGENIC
SBS	Chr10	278104	G-A	Homo	INTERGENIC
SBS	Chr10	4272135	G-T	Hetero	INTERGENIC
SBS	Chr10	13471146	G-A	Hetero	INTERGENIC
SBS	Chr10	16011629	T-C	Hetero	INTERGENIC
SBS	Chr11	15276935	G-A	Hetero	INTERGENIC
SBS	Chr11	18403501	G-T	Hetero	INTERGENIC
SBS	Chr11	23121257	T-C	Hetero	INTERGENIC
SBS	Chr11	23121271	G-A	Hetero	INTERGENIC
SBS	Chr11	28792247	T-A	Hetero	INTRON
SBS	Chr12	5072100	G-A	Hetero	INTERGENIC
SBS	Chr12	5117831	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	11757547	G-A	Hetero	INTERGENIC
SBS	Chr12	17840946	G-C	Hetero	INTERGENIC
SBS	Chr1	987181	G-A	Hetero	INTRON
SBS	Chr1	3243625	C-T	Hetero	INTERGENIC
SBS	Chr1	11500475	G-C	Homo	INTERGENIC
SBS	Chr1	12221933	T-C	Homo	INTERGENIC
SBS	Chr1	30291875	A-G	Homo	INTERGENIC
SBS	Chr2	20747931	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	27456521	C-T	Hetero	INTERGENIC
SBS	Chr2	33169246	C-T	Hetero	INTERGENIC
SBS	Chr3	9311498	A-G	Hetero	INTERGENIC
SBS	Chr3	12121932	T-G	Hetero	INTRON
SBS	Chr3	12574331	T-A	Hetero	INTERGENIC
SBS	Chr3	13559084	T-A	Hetero	INTERGENIC
SBS	Chr3	14159620	A-G	Hetero	INTERGENIC
SBS	Chr3	14678971	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g190900
SBS	Chr3	15093562	C-T	Hetero	INTERGENIC
SBS	Chr3	16680919	T-A	Hetero	INTERGENIC
SBS	Chr3	16849002	G-A	Hetero	INTERGENIC
SBS	Chr4	308931	A-G	Hetero	INTERGENIC
SBS	Chr4	4855609	C-G	Homo	INTERGENIC
SBS	Chr4	15760489	C-T	Homo	INTERGENIC
SBS	Chr4	22869925	G-A	Homo	INTERGENIC
SBS	Chr4	25122448	G-A	Hetero	INTERGENIC
SBS	Chr4	27808959	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	29066053	C-T	Hetero	INTERGENIC
SBS	Chr5	8524990	T-C	Homo	INTERGENIC
SBS	Chr5	17439245	T-C	Homo	INTERGENIC
SBS	Chr5	23533987	A-C	Homo	INTERGENIC
SBS	Chr6	2441551	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	6974889	C-T	Homo	INTERGENIC
SBS	Chr6	8557574	A-T	Homo	INTERGENIC
SBS	Chr6	15136596	C-T	Homo	INTERGENIC
SBS	Chr6	30929492	A-G	Homo	UTR_3_PRIME
SBS	Chr7	229306	C-T	Hetero	INTERGENIC
SBS	Chr7	2792238	A-C	Hetero	INTRON
SBS	Chr7	3549619	T-C	Hetero	INTRON
SBS	Chr7	6554266	G-A	Hetero	INTERGENIC
SBS	Chr7	12643915	C-G	Hetero	UTR_5_PRIME
SBS	Chr7	15177193	G-A	Hetero	INTERGENIC
SBS	Chr8	22164191	T-A	Hetero	INTERGENIC
SBS	Chr9	2734596	T-G	Homo	INTERGENIC
SBS	Chr9	2896158	T-C	Hetero	INTERGENIC
SBS	Chr9	3043961	G-T	Hetero	INTERGENIC
SBS	Chr9	13107623	A-G	Hetero	INTERGENIC
SBS	Chr10	278104	G-A	Homo	INTERGENIC
SBS	Chr10	13471146	G-A	Hetero	INTERGENIC
SBS	Chr10	16011629	T-C	Hetero	INTERGENIC
SBS	Chr11	21327674	G-A	Hetero	INTRON
SBS	Chr11	29448278	A-T	Hetero	INTERGENIC
SBS	Chr12	5117831	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	11757547	G-A	Hetero	INTERGENIC
SBS	Chr12	17840946	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	539558	539560	2	2
Deletion	Chr7	2278001	2742000	463999	37
Deletion	Chr7	2281001	2742000	460999	37
Deletion	Chr1	2486965	2486966	1	2
Deletion	Chr12	2540047	2540051	4
Deletion	Chr7	2757001	2772000	14999	OsKitaake07g035700
Deletion	Chr11	3469470	3469488	18	2
Deletion	Chr9	6944499	6944501	2	2
Deletion	Chr10	11382123	11382134	11	2
Deletion	Chr5	11508565	11508566	1
Deletion	Chr3	13005035	13005037	2
Deletion	Chr1	13222927	13222930	3	2
Deletion	Chr10	13661334	13661340	6
Deletion	Chr10	14171002	14171003	1
Deletion	Chr4	20384644	20384648	4	2
Deletion	Chr6	22029058	22029070	12
Deletion	Chr4	24013326	24013339	13	2
Deletion	Chr8	24824288	24824290	2
Deletion	Chr11	25663152	25663158	6	2
Deletion	Chr8	28689303	28689306	3
Deletion	Chr2	34836722	34836730	8	2
Deletion	Chr1	41475823	41475825	2	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes