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Mutant Information

Mutant Name	FN2668-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2668-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4623526 G-T Hetero INTERGENIC
SBS Chr1 11348704 C-T Hetero INTERGENIC
SBS Chr1 12194730 A-G Hetero INTERGENIC
SBS Chr1 13104111 C-A Hetero INTRON
SBS Chr1 13995465 C-T Hetero INTERGENIC
SBS Chr1 15436041 G-A Hetero INTERGENIC
SBS Chr1 15436042 C-A Hetero INTERGENIC
SBS Chr1 20914626 A-T Hetero INTERGENIC
SBS Chr1 22999105 C-T Hetero INTERGENIC
SBS Chr1 27857939 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g270500
SBS Chr1 38394972 G-T Hetero INTERGENIC
SBS Chr1 41410829 G-A Hetero INTERGENIC
SBS Chr2 7202829 G-C Hetero INTERGENIC
SBS Chr2 7202832 G-A Hetero INTERGENIC
SBS Chr2 7202836 G-A Hetero INTERGENIC
SBS Chr2 13959551 T-A Hetero INTRON
SBS Chr2 19081499 C-T Homo INTERGENIC
SBS Chr2 20137516 G-A Hetero INTERGENIC
SBS Chr2 20799685 T-A Hetero INTERGENIC
SBS Chr2 20799686 T-A Hetero INTERGENIC
SBS Chr2 20800130 T-G Hetero INTERGENIC
SBS Chr2 23064388 G-A Hetero INTERGENIC
SBS Chr2 23124925 A-T Hetero INTERGENIC
SBS Chr2 25260153 C-T Hetero INTERGENIC
SBS Chr2 28190556 T-A Hetero INTERGENIC
SBS Chr2 33294805 C-T Hetero INTRON
SBS Chr3 17893121 C-T Hetero INTERGENIC
SBS Chr3 17896975 A-T Homo INTERGENIC
SBS Chr3 18643740 C-T Hetero INTERGENIC
SBS Chr3 19267006 C-T Hetero INTERGENIC
SBS Chr3 37438351 G-A Homo INTERGENIC
SBS Chr4 20367856 C-T Hetero INTERGENIC
SBS Chr4 36621830 G-A Hetero INTERGENIC
SBS Chr5 26412921 C-T Hetero INTRON
SBS Chr6 9498713 T-G Hetero INTRON
SBS Chr6 18141464 C-G Hetero INTERGENIC
SBS Chr7 306051 T-C Hetero UTR_3_PRIME
SBS Chr7 27008988 A-G Hetero UTR_3_PRIME
SBS Chr7 27069521 G-T Hetero INTERGENIC
SBS Chr8 13572831 C-G Hetero INTERGENIC
SBS Chr8 15745409 T-C Hetero INTRON
SBS Chr8 21932486 G-A Hetero INTERGENIC
SBS Chr8 27201665 C-T Homo INTRON
SBS Chr9 6935297 A-G Hetero INTERGENIC
SBS Chr9 12625631 G-A Homo UTR_5_PRIME
SBS Chr9 15829616 A-T Hetero INTERGENIC
SBS Chr9 18960654 G-T Hetero UTR_3_PRIME
SBS Chr10 1137697 G-C Hetero INTERGENIC
SBS Chr10 2592999 A-G Hetero INTERGENIC
SBS Chr10 7962374 C-T Hetero INTERGENIC
SBS Chr10 12369476 G-A Hetero INTERGENIC
SBS Chr10 13054097 C-A Hetero INTERGENIC
SBS Chr11 18079303 G-A Hetero INTERGENIC
SBS Chr12 1544689 C-T Hetero INTERGENIC
SBS Chr12 9736255 G-A Hetero INTERGENIC
SBS Chr12 21608141 T-C Hetero INTERGENIC
SBS Chr12 24034156 T-A Hetero INTERGENIC

Deletions: 32

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 307412 307413 1
Deletion Chr12 917349 917351 2
Deletion Chr9 933611 933614 3
Deletion Chr9 3270163 3270164 1
Deletion Chr10 3784581 3784582 1
Deletion Chr1 5080577 5080579 2
Deletion Chr9 6059837 6059840 3
Deletion Chr2 7045155 7045163 8
Deletion Chr2 7124001 7144000 19999 OsKitaake02g095800
Deletion Chr3 9929892 9929894 2
Deletion Chr10 10102814 10102824 10
Deletion Chr11 11294665 11294666 1
Deletion Chr2 11316003 11316004 1
Deletion Chr6 14952364 14952371 7
Deletion Chr2 17733265 17733266 1 OsKitaake02g177700
Deletion Chr12 18846119 18846131 12
Deletion Chr5 20816734 20816748 14 OsKitaake05g166600
Deletion Chr5 21301528 21301529 1
Deletion Chr12 21589478 21589488 10
Deletion Chr7 21646001 21703000 56999 8
Deletion Chr9 22174535 22174559 24
Deletion Chr12 22578509 22578515 6 OsKitaake12g177200
Deletion Chr3 23001426 23001457 31
Deletion Chr2 24884562 24884563 1
Deletion Chr6 26604992 26604993 1
Deletion Chr11 27051883 27051885 2
Deletion Chr3 27397199 27397210 11
Deletion Chr1 28256507 28256509 2
Deletion Chr1 28909101 28909108 7
Deletion Chr6 30852335 30852336 1
Deletion Chr3 31548759 31548760 1
Deletion Chr2 35932400 35932402 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 12574045 12574048 2
Insertion Chr7 1254156 1254159 2
Insertion Chr10 11249451 11249455 3
Insertion Chr11 11876774 11876777 2
Insertion Chr12 11006889 11006891 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 6224526 Chr3 19465737 OsKitaake08g066700
Translocation Chr8 6224947 Chr3 19465737 OsKitaake08g066700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4623526	G-T	Hetero	INTERGENIC
SBS	Chr1	11348704	C-T	Hetero	INTERGENIC
SBS	Chr1	12194730	A-G	Hetero	INTERGENIC
SBS	Chr1	13104111	C-A	Hetero	INTRON
SBS	Chr1	13995465	C-T	Hetero	INTERGENIC
SBS	Chr1	15436041	G-A	Hetero	INTERGENIC
SBS	Chr1	15436042	C-A	Hetero	INTERGENIC
SBS	Chr1	20914626	A-T	Hetero	INTERGENIC
SBS	Chr1	22999105	C-T	Hetero	INTERGENIC
SBS	Chr1	27857939	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g270500
SBS	Chr1	38394972	G-T	Hetero	INTERGENIC
SBS	Chr1	41410829	G-A	Hetero	INTERGENIC
SBS	Chr2	7202829	G-C	Hetero	INTERGENIC
SBS	Chr2	7202832	G-A	Hetero	INTERGENIC
SBS	Chr2	7202836	G-A	Hetero	INTERGENIC
SBS	Chr2	13959551	T-A	Hetero	INTRON
SBS	Chr2	19081499	C-T	Homo	INTERGENIC
SBS	Chr2	20137516	G-A	Hetero	INTERGENIC
SBS	Chr2	20799685	T-A	Hetero	INTERGENIC
SBS	Chr2	20799686	T-A	Hetero	INTERGENIC
SBS	Chr2	20800130	T-G	Hetero	INTERGENIC
SBS	Chr2	23064388	G-A	Hetero	INTERGENIC
SBS	Chr2	23124925	A-T	Hetero	INTERGENIC
SBS	Chr2	25260153	C-T	Hetero	INTERGENIC
SBS	Chr2	28190556	T-A	Hetero	INTERGENIC
SBS	Chr2	33294805	C-T	Hetero	INTRON
SBS	Chr3	17893121	C-T	Hetero	INTERGENIC
SBS	Chr3	17896975	A-T	Homo	INTERGENIC
SBS	Chr3	18643740	C-T	Hetero	INTERGENIC
SBS	Chr3	19267006	C-T	Hetero	INTERGENIC
SBS	Chr3	37438351	G-A	Homo	INTERGENIC
SBS	Chr4	20367856	C-T	Hetero	INTERGENIC
SBS	Chr4	36621830	G-A	Hetero	INTERGENIC
SBS	Chr5	26412921	C-T	Hetero	INTRON
SBS	Chr6	9498713	T-G	Hetero	INTRON
SBS	Chr6	18141464	C-G	Hetero	INTERGENIC
SBS	Chr7	306051	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	27008988	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	27069521	G-T	Hetero	INTERGENIC
SBS	Chr8	13572831	C-G	Hetero	INTERGENIC
SBS	Chr8	15745409	T-C	Hetero	INTRON
SBS	Chr8	21932486	G-A	Hetero	INTERGENIC
SBS	Chr8	27201665	C-T	Homo	INTRON
SBS	Chr9	6935297	A-G	Hetero	INTERGENIC
SBS	Chr9	12625631	G-A	Homo	UTR_5_PRIME
SBS	Chr9	15829616	A-T	Hetero	INTERGENIC
SBS	Chr9	18960654	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	1137697	G-C	Hetero	INTERGENIC
SBS	Chr10	2592999	A-G	Hetero	INTERGENIC
SBS	Chr10	7962374	C-T	Hetero	INTERGENIC
SBS	Chr10	12369476	G-A	Hetero	INTERGENIC
SBS	Chr10	13054097	C-A	Hetero	INTERGENIC
SBS	Chr11	18079303	G-A	Hetero	INTERGENIC
SBS	Chr12	1544689	C-T	Hetero	INTERGENIC
SBS	Chr12	9736255	G-A	Hetero	INTERGENIC
SBS	Chr12	21608141	T-C	Hetero	INTERGENIC
SBS	Chr12	24034156	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	307412	307413	1
Deletion	Chr12	917349	917351	2
Deletion	Chr9	933611	933614	3
Deletion	Chr9	3270163	3270164	1
Deletion	Chr10	3784581	3784582	1
Deletion	Chr1	5080577	5080579	2
Deletion	Chr9	6059837	6059840	3
Deletion	Chr2	7045155	7045163	8
Deletion	Chr2	7124001	7144000	19999	OsKitaake02g095800
Deletion	Chr3	9929892	9929894	2
Deletion	Chr10	10102814	10102824	10
Deletion	Chr11	11294665	11294666	1
Deletion	Chr2	11316003	11316004	1
Deletion	Chr6	14952364	14952371	7
Deletion	Chr2	17733265	17733266	1	OsKitaake02g177700
Deletion	Chr12	18846119	18846131	12
Deletion	Chr5	20816734	20816748	14	OsKitaake05g166600
Deletion	Chr5	21301528	21301529	1
Deletion	Chr12	21589478	21589488	10
Deletion	Chr7	21646001	21703000	56999	8
Deletion	Chr9	22174535	22174559	24
Deletion	Chr12	22578509	22578515	6	OsKitaake12g177200
Deletion	Chr3	23001426	23001457	31
Deletion	Chr2	24884562	24884563	1
Deletion	Chr6	26604992	26604993	1
Deletion	Chr11	27051883	27051885	2
Deletion	Chr3	27397199	27397210	11
Deletion	Chr1	28256507	28256509	2
Deletion	Chr1	28909101	28909108	7
Deletion	Chr6	30852335	30852336	1
Deletion	Chr3	31548759	31548760	1
Deletion	Chr2	35932400	35932402	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6224526	Chr3	19465737	OsKitaake08g066700
Translocation	Chr8	6224947	Chr3	19465737	OsKitaake08g066700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes