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Mutant Information

Mutant Name	FN2669-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2669-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11070440	G-A	Hetero	INTERGENIC
SBS	Chr1	17294649	C-T	Hetero	INTERGENIC
SBS	Chr1	23862364	G-C	Hetero	INTRON
SBS	Chr1	27463770	A-T	Hetero	INTERGENIC
SBS	Chr2	5847538	G-A	Hetero	INTRON
SBS	Chr2	10530529	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	10973284	C-A	Hetero	INTRON
SBS	Chr2	17920449	A-T	Hetero	INTERGENIC
SBS	Chr2	25644432	G-C	Hetero	INTERGENIC
SBS	Chr3	211800	G-A	Hetero	INTERGENIC
SBS	Chr3	18849639	T-C	Homo	INTERGENIC
SBS	Chr3	19105142	C-T	Hetero	INTERGENIC
SBS	Chr3	23984272	C-T	Hetero	INTERGENIC
SBS	Chr3	35275114	G-A	Hetero	INTERGENIC
SBS	Chr3	37575181	C-T	Hetero	INTERGENIC
SBS	Chr4	3389739	C-A	Hetero	INTERGENIC
SBS	Chr4	3702260	C-T	Hetero	INTERGENIC
SBS	Chr4	9948109	T-C	Hetero	INTERGENIC
SBS	Chr5	5641068	C-T	Hetero	INTERGENIC
SBS	Chr5	10504255	G-A	Hetero	INTERGENIC
SBS	Chr5	14924318	G-A	Hetero	INTERGENIC
SBS	Chr5	29660720	C-T	Hetero	INTERGENIC
SBS	Chr6	5415154	T-C	Hetero	INTERGENIC
SBS	Chr6	14831901	G-A	Homo	INTERGENIC
SBS	Chr6	15615731	C-A	Homo	INTERGENIC
SBS	Chr6	18300309	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	19583191	T-C	Homo	INTERGENIC
SBS	Chr7	10860553	C-A	Hetero	INTRON
SBS	Chr7	11508041	A-T	Hetero	INTRON
SBS	Chr7	12693639	C-T	Hetero	INTERGENIC
SBS	Chr7	20597836	G-A	Hetero	INTERGENIC
SBS	Chr7	23672372	C-T	Hetero	INTRON
SBS	Chr7	24306880	C-T	Hetero	INTERGENIC
SBS	Chr7	27541383	C-T	Hetero	INTRON
SBS	Chr8	4719607	A-G	Hetero	INTRON
SBS	Chr8	10808432	G-A	Hetero	INTERGENIC
SBS	Chr8	18988064	C-G	Hetero	INTERGENIC
SBS	Chr10	2687930	A-G	Hetero	INTERGENIC
SBS	Chr10	8302172	A-G	Hetero	INTERGENIC
SBS	Chr10	12214330	G-A	Hetero	INTERGENIC
SBS	Chr11	9962462	C-T	Hetero	INTERGENIC
SBS	Chr11	28059113	A-G	Hetero	INTERGENIC
SBS	Chr12	12143484	G-A	Hetero	INTERGENIC
SBS	Chr12	17088681	G-A	Homo	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1185303	1185312	9
Deletion	Chr8	1345122	1345123	1
Deletion	Chr1	3512689	3512694	5
Deletion	Chr5	4272754	4272763	9
Deletion	Chr8	11659804	11659809	5
Deletion	Chr7	12718073	12718074	1
Deletion	Chr1	12883693	12883695	2
Deletion	Chr9	16053191	16053200	9
Deletion	Chr2	17445272	17445280	8
Deletion	Chr8	19363001	19403000	39999	3
Deletion	Chr2	19971039	19971042	3
Deletion	Chr12	21967418	21967431	13	OsKitaake12g172300
Deletion	Chr1	22956592	22956596	4
Deletion	Chr7	23486279	23486281	2
Deletion	Chr3	23923085	23923096	11
Deletion	Chr7	24181624	24181626	2
Deletion	Chr3	24393479	24393481	2
Deletion	Chr8	25185393	25185394	1
Deletion	Chr1	29043418	29043424	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	11764883	11764886	2
Insertion	Chr1	18934976	18934979	2
Insertion	Chr3	3947402	3947406	3
Insertion	Chr4	34711299	34711302	2
Insertion	Chr5	17332337	17332340	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17242807	17868625	OsKitaake10g124200
Inversion	Chr10	17243092	17868626	OsKitaake10g124200

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3615967	Chr8	2673890	OsKitaake11g050000
Translocation	Chr11	3615970	Chr8	2673085	OsKitaake11g050000
Translocation	Chr11	10662562	Chr10	17242807	OsKitaake11g105100
Translocation	Chr11	10662564	Chr10	17243087	OsKitaake11g105100

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