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Mutant Information

Mutant Name	FN267-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN267-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7355405 G-A Homo INTERGENIC
SBS Chr1 26027887 C-T Homo INTRON
SBS Chr1 28557580 C-A Hetero INTERGENIC
SBS Chr1 38940361 C-T Hetero INTRON
SBS Chr2 10002042 A-T Homo UTR_3_PRIME
SBS Chr2 19134261 G-C Homo INTERGENIC
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr3 32855385 A-T Hetero INTERGENIC
SBS Chr3 36577686 A-G Hetero INTERGENIC
SBS Chr3 37210358 T-A Hetero INTRON
SBS Chr4 273036 A-T Hetero INTERGENIC
SBS Chr4 21507430 T-C Hetero INTERGENIC
SBS Chr6 12062616 T-A Homo INTERGENIC
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr6 27623669 T-A Hetero INTERGENIC
SBS Chr7 11827236 T-A Hetero INTERGENIC
SBS Chr7 28720381 C-T Homo INTRON
SBS Chr7 29513526 T-C Hetero UTR_3_PRIME
SBS Chr8 16494344 A-C Hetero INTERGENIC
SBS Chr8 21574519 T-A Hetero INTERGENIC
SBS Chr8 28130974 C-T Hetero INTERGENIC
SBS Chr8 28130975 G-T Hetero INTERGENIC
SBS Chr10 22019172 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g178200
SBS Chr11 4563084 C-T Homo INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr11 18194218 G-C Hetero INTERGENIC

Deletions: 48

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1418001 1467000 48999 OsKitaake04g010500
Deletion Chr12 2134001 2169000 34999
Deletion Chr8 2345001 2371000 25999 OsKitaake08g028300
Deletion Chr9 2502001 2520000 17999 OsKitaake09g013600
Deletion Chr2 2944001 2953000 8999
Deletion Chr5 3855001 3877000 21999 2
Deletion Chr11 3954001 3971000 16999
Deletion Chr5 4318001 4337000 18999
Deletion Chr8 5072790 5073158 368
Deletion Chr9 5114288 5114434 146
Deletion Chr8 8003979 8003981 2
Deletion Chr10 8028001 8062000 33999 3
Deletion Chr8 8302001 8327000 24999
Deletion Chr2 10103001 10123000 19999
Deletion Chr2 10369001 10398000 28999
Deletion Chr8 11526001 11550000 23999
Deletion Chr11 11942001 11967000 24999
Deletion Chr2 12002001 12017000 14999
Deletion Chr4 13067001 13086000 18999
Deletion Chr5 13172001 13196000 23999
Deletion Chr5 13326001 13338000 11999
Deletion Chr10 14037001 14059000 21999 3
Deletion Chr8 14230001 14253000 22999
Deletion Chr8 14271001 14284000 12999
Deletion Chr8 14291001 14314000 22999 OsKitaake08g112500
Deletion Chr4 14731001 14760000 28999 2
Deletion Chr1 15106001 15130000 23999
Deletion Chr5 15579001 15599000 19999
Deletion Chr1 17993001 18019000 25999
Deletion Chr4 18075001 18099000 23999
Deletion Chr4 18114001 18126000 11999
Deletion Chr2 18501001 18606000 104999
Deletion Chr5 18707001 18727000 19999
Deletion Chr3 20029141 20029296 155
Deletion Chr7 22804001 22856000 51999
Deletion Chr8 23160001 23181000 20999
Deletion Chr12 24299001 24311000 11999
Deletion Chr11 24993001 25017000 23999
Deletion Chr11 26831001 26855000 23999 OsKitaake11g218400
Deletion Chr1 27384001 27405000 20999 OsKitaake01g266600
Deletion Chr2 29196001 29208000 11999
Deletion Chr2 29391001 29404000 12999
Deletion Chr1 30141001 30158000 16999
Deletion Chr3 32296001 32354000 57999
Deletion Chr4 32926001 32938000 11999
Deletion Chr4 33506001 33518000 11999
Deletion Chr1 34697001 34720000 22999
Deletion Chr1 36213001 36233000 19999

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 17352396 17352399 2
Insertion Chr3 20050183 20050185 1
Insertion Chr3 26310606 26310609 2
Insertion Chr5 15447156 15447158 1
Insertion Chr6 2776 2778 1
Insertion Chr6 10856 10859 2
Insertion Chr6 15572 15574 1
Insertion Chr6 15742549 15742552 2
Insertion Chr12 11417913 11417915 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 20578332 20976664
Inversion Chr4 20578664 20976667

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 6036883 Chr4 20578656
Translocation Chr10 8028416 Chr4 20578334 OsKitaake10g050600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7355405	G-A	Homo	INTERGENIC
SBS	Chr1	26027887	C-T	Homo	INTRON
SBS	Chr1	28557580	C-A	Hetero	INTERGENIC
SBS	Chr1	38940361	C-T	Hetero	INTRON
SBS	Chr2	10002042	A-T	Homo	UTR_3_PRIME
SBS	Chr2	19134261	G-C	Homo	INTERGENIC
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr3	32855385	A-T	Hetero	INTERGENIC
SBS	Chr3	36577686	A-G	Hetero	INTERGENIC
SBS	Chr3	37210358	T-A	Hetero	INTRON
SBS	Chr4	273036	A-T	Hetero	INTERGENIC
SBS	Chr4	21507430	T-C	Hetero	INTERGENIC
SBS	Chr6	12062616	T-A	Homo	INTERGENIC
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr6	27623669	T-A	Hetero	INTERGENIC
SBS	Chr7	11827236	T-A	Hetero	INTERGENIC
SBS	Chr7	28720381	C-T	Homo	INTRON
SBS	Chr7	29513526	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	16494344	A-C	Hetero	INTERGENIC
SBS	Chr8	21574519	T-A	Hetero	INTERGENIC
SBS	Chr8	28130974	C-T	Hetero	INTERGENIC
SBS	Chr8	28130975	G-T	Hetero	INTERGENIC
SBS	Chr10	22019172	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g178200
SBS	Chr11	4563084	C-T	Homo	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr11	18194218	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1418001	1467000	48999	OsKitaake04g010500
Deletion	Chr12	2134001	2169000	34999
Deletion	Chr8	2345001	2371000	25999	OsKitaake08g028300
Deletion	Chr9	2502001	2520000	17999	OsKitaake09g013600
Deletion	Chr2	2944001	2953000	8999
Deletion	Chr5	3855001	3877000	21999	2
Deletion	Chr11	3954001	3971000	16999
Deletion	Chr5	4318001	4337000	18999
Deletion	Chr8	5072790	5073158	368
Deletion	Chr9	5114288	5114434	146
Deletion	Chr8	8003979	8003981	2
Deletion	Chr10	8028001	8062000	33999	3
Deletion	Chr8	8302001	8327000	24999
Deletion	Chr2	10103001	10123000	19999
Deletion	Chr2	10369001	10398000	28999
Deletion	Chr8	11526001	11550000	23999
Deletion	Chr11	11942001	11967000	24999
Deletion	Chr2	12002001	12017000	14999
Deletion	Chr4	13067001	13086000	18999
Deletion	Chr5	13172001	13196000	23999
Deletion	Chr5	13326001	13338000	11999
Deletion	Chr10	14037001	14059000	21999	3
Deletion	Chr8	14230001	14253000	22999
Deletion	Chr8	14271001	14284000	12999
Deletion	Chr8	14291001	14314000	22999	OsKitaake08g112500
Deletion	Chr4	14731001	14760000	28999	2
Deletion	Chr1	15106001	15130000	23999
Deletion	Chr5	15579001	15599000	19999
Deletion	Chr1	17993001	18019000	25999
Deletion	Chr4	18075001	18099000	23999
Deletion	Chr4	18114001	18126000	11999
Deletion	Chr2	18501001	18606000	104999
Deletion	Chr5	18707001	18727000	19999
Deletion	Chr3	20029141	20029296	155
Deletion	Chr7	22804001	22856000	51999
Deletion	Chr8	23160001	23181000	20999
Deletion	Chr12	24299001	24311000	11999
Deletion	Chr11	24993001	25017000	23999
Deletion	Chr11	26831001	26855000	23999	OsKitaake11g218400
Deletion	Chr1	27384001	27405000	20999	OsKitaake01g266600
Deletion	Chr2	29196001	29208000	11999
Deletion	Chr2	29391001	29404000	12999
Deletion	Chr1	30141001	30158000	16999
Deletion	Chr3	32296001	32354000	57999
Deletion	Chr4	32926001	32938000	11999
Deletion	Chr4	33506001	33518000	11999
Deletion	Chr1	34697001	34720000	22999
Deletion	Chr1	36213001	36233000	19999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	20578332	20976664
Inversion	Chr4	20578664	20976667

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes