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Mutant Information

Mutant Name	FN2670-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2670-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 78

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5347780 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 7160275 T-A Hetero INTERGENIC
SBS Chr1 7333147 G-A Hetero INTERGENIC
SBS Chr1 11070440 G-A Hetero INTERGENIC
SBS Chr1 14074362 C-T Hetero INTERGENIC
SBS Chr1 14119611 G-A Hetero INTERGENIC
SBS Chr1 17294649 C-T Hetero INTERGENIC
SBS Chr1 17879769 G-A Hetero INTERGENIC
SBS Chr1 22103862 G-T Hetero INTERGENIC
SBS Chr1 22851367 G-T Hetero INTERGENIC
SBS Chr1 26722373 C-T Hetero INTERGENIC
SBS Chr1 27463770 A-T Homo INTERGENIC
SBS Chr1 32285053 G-T Hetero INTERGENIC
SBS Chr2 10530529 T-C Homo SYNONYMOUS_CODING
SBS Chr2 10973284 C-A Homo INTRON
SBS Chr2 17920449 A-T Homo INTERGENIC
SBS Chr2 31623339 T-A Hetero INTRON
SBS Chr2 34766631 T-C Hetero INTERGENIC
SBS Chr3 934154 A-G Hetero INTERGENIC
SBS Chr3 4928923 A-T Hetero INTERGENIC
SBS Chr3 16329089 C-T Homo INTERGENIC
SBS Chr3 17260516 G-A Hetero INTRON
SBS Chr3 18783572 C-T Homo INTERGENIC
SBS Chr3 20843632 A-T Homo INTERGENIC
SBS Chr3 22213810 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g241800
SBS Chr3 24637522 C-T Hetero INTERGENIC
SBS Chr3 28765378 A-T Hetero SYNONYMOUS_CODING
SBS Chr3 37575181 C-T Homo INTERGENIC
SBS Chr4 2787947 C-T Hetero INTERGENIC
SBS Chr4 9948109 T-C Homo INTERGENIC
SBS Chr4 10173430 C-T Hetero INTERGENIC
SBS Chr4 10503873 C-T Hetero INTERGENIC
SBS Chr4 28917351 G-T Hetero INTERGENIC
SBS Chr4 31646812 G-T Hetero INTERGENIC
SBS Chr4 34007366 G-T Hetero STOP_GAINED OsKitaake04g283800
SBS Chr5 6912072 T-C Hetero INTERGENIC
SBS Chr5 10272274 G-A Hetero INTERGENIC
SBS Chr5 11749291 G-A Hetero INTERGENIC
SBS Chr5 12896172 A-C Hetero INTERGENIC
SBS Chr5 14924318 G-A Hetero INTERGENIC
SBS Chr5 22205565 G-T Hetero UTR_5_PRIME
SBS Chr5 29343329 G-A Hetero INTRON
SBS Chr6 8726242 C-G Hetero INTERGENIC
SBS Chr6 18789772 G-A Hetero INTRON
SBS Chr6 19808801 A-T Hetero INTERGENIC
SBS Chr6 21540673 G-T Hetero INTERGENIC
SBS Chr6 24193683 G-A Hetero INTERGENIC
SBS Chr6 27004014 G-C Hetero INTERGENIC
SBS Chr6 29121481 C-A Hetero INTERGENIC
SBS Chr7 1637000 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 11508041 A-T Hetero INTRON
SBS Chr7 12693639 C-T Hetero INTERGENIC
SBS Chr7 20597836 G-A Homo INTERGENIC
SBS Chr7 22037314 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g185600
SBS Chr7 27541383 C-T Hetero INTRON
SBS Chr7 29584527 G-A Hetero INTERGENIC
SBS Chr8 2045257 T-A Hetero INTERGENIC
SBS Chr8 8753653 C-T Hetero INTERGENIC
SBS Chr8 12174984 T-C Hetero INTERGENIC
SBS Chr8 28865320 G-A Hetero INTERGENIC
SBS Chr9 2130331 C-T Hetero INTERGENIC
SBS Chr9 2741195 C-T Hetero INTERGENIC
SBS Chr9 6288618 G-T Hetero INTERGENIC
SBS Chr9 7221252 A-G Hetero INTERGENIC
SBS Chr9 7753272 C-T Hetero INTERGENIC
SBS Chr9 7996747 C-T Hetero INTERGENIC
SBS Chr9 8263956 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 9779168 G-A Hetero INTERGENIC
SBS Chr9 10132943 C-T Hetero INTERGENIC
SBS Chr10 2117974 G-A Hetero INTERGENIC
SBS Chr10 8302172 A-G Homo INTERGENIC
SBS Chr10 19246903 T-C Hetero INTERGENIC
SBS Chr10 24013173 C-T Hetero INTERGENIC
SBS Chr11 1249385 C-T Hetero INTERGENIC
SBS Chr11 15505118 G-A Hetero INTERGENIC
SBS Chr11 22024194 C-T Hetero INTERGENIC
SBS Chr12 2081349 G-T Hetero INTERGENIC
SBS Chr12 17088681 G-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 43254 43255 1
Deletion Chr1 371293 371295 2 OsKitaake01g005200
Deletion Chr6 1185303 1185312 9
Deletion Chr8 1345122 1345123 1
Deletion Chr1 1734214 1734223 9
Deletion Chr4 2312237 2312240 3
Deletion Chr8 3452973 3452974 1
Deletion Chr1 3512689 3512694 5
Deletion Chr5 4272754 4272763 9
Deletion Chr4 5419244 5419255 11
Deletion Chr1 7232809 7232810 1 OsKitaake01g090700
Deletion Chr4 8792933 8792939 6
Deletion Chr10 8860222 8860226 4
Deletion Chr8 11659804 11659809 5
Deletion Chr6 12527917 12527923 6
Deletion Chr7 12718073 12718074 1
Deletion Chr9 13428571 13428572 1
Deletion Chr10 13760760 13760762 2
Deletion Chr5 13857500 13857513 13
Deletion Chr8 14083751 14083780 29
Deletion Chr6 14558694 14558702 8
Deletion Chr2 17445272 17445280 8
Deletion Chr6 18714794 18714804 10
Deletion Chr6 18760719 18760720 1
Deletion Chr8 19365001 19401000 35999 2
Deletion Chr3 22275842 22275844 2
Deletion Chr1 22956592 22956596 4
Deletion Chr2 24413001 24424000 10999
Deletion Chr8 25185393 25185394 1
Deletion Chr1 30869751 30869752 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18934976 18934979 2
Insertion Chr2 30654916 30654919 2
Insertion Chr8 10588909 10588912 2
Insertion Chr10 3733720 3733724 3
Insertion Chr12 26130530 26130534 3
Insertion Chr5 29939081 29939084 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 17242807 17868625 OsKitaake10g124200
Inversion Chr10 17243092 17868626 OsKitaake10g124200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3615967 Chr8 2673890 OsKitaake11g050000
Translocation Chr11 3615970 Chr8 2673085 OsKitaake11g050000
Translocation Chr11 10662562 Chr10 17242807 OsKitaake11g105100
Translocation Chr11 10662564 Chr10 17243087 OsKitaake11g105100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5347780	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	7160275	T-A	Hetero	INTERGENIC
SBS	Chr1	7333147	G-A	Hetero	INTERGENIC
SBS	Chr1	11070440	G-A	Hetero	INTERGENIC
SBS	Chr1	14074362	C-T	Hetero	INTERGENIC
SBS	Chr1	14119611	G-A	Hetero	INTERGENIC
SBS	Chr1	17294649	C-T	Hetero	INTERGENIC
SBS	Chr1	17879769	G-A	Hetero	INTERGENIC
SBS	Chr1	22103862	G-T	Hetero	INTERGENIC
SBS	Chr1	22851367	G-T	Hetero	INTERGENIC
SBS	Chr1	26722373	C-T	Hetero	INTERGENIC
SBS	Chr1	27463770	A-T	Homo	INTERGENIC
SBS	Chr1	32285053	G-T	Hetero	INTERGENIC
SBS	Chr2	10530529	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr2	10973284	C-A	Homo	INTRON
SBS	Chr2	17920449	A-T	Homo	INTERGENIC
SBS	Chr2	31623339	T-A	Hetero	INTRON
SBS	Chr2	34766631	T-C	Hetero	INTERGENIC
SBS	Chr3	934154	A-G	Hetero	INTERGENIC
SBS	Chr3	4928923	A-T	Hetero	INTERGENIC
SBS	Chr3	16329089	C-T	Homo	INTERGENIC
SBS	Chr3	17260516	G-A	Hetero	INTRON
SBS	Chr3	18783572	C-T	Homo	INTERGENIC
SBS	Chr3	20843632	A-T	Homo	INTERGENIC
SBS	Chr3	22213810	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241800
SBS	Chr3	24637522	C-T	Hetero	INTERGENIC
SBS	Chr3	28765378	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	37575181	C-T	Homo	INTERGENIC
SBS	Chr4	2787947	C-T	Hetero	INTERGENIC
SBS	Chr4	9948109	T-C	Homo	INTERGENIC
SBS	Chr4	10173430	C-T	Hetero	INTERGENIC
SBS	Chr4	10503873	C-T	Hetero	INTERGENIC
SBS	Chr4	28917351	G-T	Hetero	INTERGENIC
SBS	Chr4	31646812	G-T	Hetero	INTERGENIC
SBS	Chr4	34007366	G-T	Hetero	STOP_GAINED	OsKitaake04g283800
SBS	Chr5	6912072	T-C	Hetero	INTERGENIC
SBS	Chr5	10272274	G-A	Hetero	INTERGENIC
SBS	Chr5	11749291	G-A	Hetero	INTERGENIC
SBS	Chr5	12896172	A-C	Hetero	INTERGENIC
SBS	Chr5	14924318	G-A	Hetero	INTERGENIC
SBS	Chr5	22205565	G-T	Hetero	UTR_5_PRIME
SBS	Chr5	29343329	G-A	Hetero	INTRON
SBS	Chr6	8726242	C-G	Hetero	INTERGENIC
SBS	Chr6	18789772	G-A	Hetero	INTRON
SBS	Chr6	19808801	A-T	Hetero	INTERGENIC
SBS	Chr6	21540673	G-T	Hetero	INTERGENIC
SBS	Chr6	24193683	G-A	Hetero	INTERGENIC
SBS	Chr6	27004014	G-C	Hetero	INTERGENIC
SBS	Chr6	29121481	C-A	Hetero	INTERGENIC
SBS	Chr7	1637000	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	11508041	A-T	Hetero	INTRON
SBS	Chr7	12693639	C-T	Hetero	INTERGENIC
SBS	Chr7	20597836	G-A	Homo	INTERGENIC
SBS	Chr7	22037314	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g185600
SBS	Chr7	27541383	C-T	Hetero	INTRON
SBS	Chr7	29584527	G-A	Hetero	INTERGENIC
SBS	Chr8	2045257	T-A	Hetero	INTERGENIC
SBS	Chr8	8753653	C-T	Hetero	INTERGENIC
SBS	Chr8	12174984	T-C	Hetero	INTERGENIC
SBS	Chr8	28865320	G-A	Hetero	INTERGENIC
SBS	Chr9	2130331	C-T	Hetero	INTERGENIC
SBS	Chr9	2741195	C-T	Hetero	INTERGENIC
SBS	Chr9	6288618	G-T	Hetero	INTERGENIC
SBS	Chr9	7221252	A-G	Hetero	INTERGENIC
SBS	Chr9	7753272	C-T	Hetero	INTERGENIC
SBS	Chr9	7996747	C-T	Hetero	INTERGENIC
SBS	Chr9	8263956	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	9779168	G-A	Hetero	INTERGENIC
SBS	Chr9	10132943	C-T	Hetero	INTERGENIC
SBS	Chr10	2117974	G-A	Hetero	INTERGENIC
SBS	Chr10	8302172	A-G	Homo	INTERGENIC
SBS	Chr10	19246903	T-C	Hetero	INTERGENIC
SBS	Chr10	24013173	C-T	Hetero	INTERGENIC
SBS	Chr11	1249385	C-T	Hetero	INTERGENIC
SBS	Chr11	15505118	G-A	Hetero	INTERGENIC
SBS	Chr11	22024194	C-T	Hetero	INTERGENIC
SBS	Chr12	2081349	G-T	Hetero	INTERGENIC
SBS	Chr12	17088681	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	43254	43255	1
Deletion	Chr1	371293	371295	2	OsKitaake01g005200
Deletion	Chr6	1185303	1185312	9
Deletion	Chr8	1345122	1345123	1
Deletion	Chr1	1734214	1734223	9
Deletion	Chr4	2312237	2312240	3
Deletion	Chr8	3452973	3452974	1
Deletion	Chr1	3512689	3512694	5
Deletion	Chr5	4272754	4272763	9
Deletion	Chr4	5419244	5419255	11
Deletion	Chr1	7232809	7232810	1	OsKitaake01g090700
Deletion	Chr4	8792933	8792939	6
Deletion	Chr10	8860222	8860226	4
Deletion	Chr8	11659804	11659809	5
Deletion	Chr6	12527917	12527923	6
Deletion	Chr7	12718073	12718074	1
Deletion	Chr9	13428571	13428572	1
Deletion	Chr10	13760760	13760762	2
Deletion	Chr5	13857500	13857513	13
Deletion	Chr8	14083751	14083780	29
Deletion	Chr6	14558694	14558702	8
Deletion	Chr2	17445272	17445280	8
Deletion	Chr6	18714794	18714804	10
Deletion	Chr6	18760719	18760720	1
Deletion	Chr8	19365001	19401000	35999	2
Deletion	Chr3	22275842	22275844	2
Deletion	Chr1	22956592	22956596	4
Deletion	Chr2	24413001	24424000	10999
Deletion	Chr8	25185393	25185394	1
Deletion	Chr1	30869751	30869752	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17242807	17868625	OsKitaake10g124200
Inversion	Chr10	17243092	17868626	OsKitaake10g124200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes