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Mutant Information

Mutant Name	FN2671-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2671-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4208167 C-T Hetero INTRON
SBS Chr1 13258248 T-A Homo INTERGENIC
SBS Chr1 13258268 G-C Homo INTERGENIC
SBS Chr1 24314429 A-T Hetero INTERGENIC
SBS Chr1 40661274 G-T Homo STOP_GAINED OsKitaake01g442100
SBS Chr2 11626995 T-A Hetero INTERGENIC
SBS Chr2 17095068 C-T Hetero INTERGENIC
SBS Chr2 36287998 A-T Hetero INTERGENIC
SBS Chr3 1516488 A-G Homo INTERGENIC
SBS Chr3 2373343 A-T Hetero INTERGENIC
SBS Chr3 19969616 T-C Homo INTRON
SBS Chr3 20101410 C-A Hetero INTERGENIC
SBS Chr3 28542708 G-T Hetero INTERGENIC
SBS Chr3 33380328 A-T Hetero INTRON
SBS Chr3 37781360 C-T Hetero INTRON
SBS Chr4 15202236 G-A Hetero INTERGENIC
SBS Chr4 19308297 G-A Hetero INTERGENIC
SBS Chr4 28407202 T-C Hetero INTRON
SBS Chr4 30143337 G-A Hetero INTERGENIC
SBS Chr5 2765959 T-G Hetero INTRON
SBS Chr5 8609805 G-A Homo INTERGENIC
SBS Chr5 12041086 T-A Homo INTERGENIC
SBS Chr6 8020049 G-A Hetero INTERGENIC
SBS Chr6 18691009 G-C Hetero INTERGENIC
SBS Chr7 1731145 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g024200
SBS Chr7 7451081 T-C Hetero INTERGENIC
SBS Chr7 13307538 A-T Hetero INTRON
SBS Chr7 16249853 G-T Hetero INTRON
SBS Chr8 7708372 C-A Hetero INTERGENIC
SBS Chr8 16628410 A-T Homo INTERGENIC
SBS Chr8 17433195 C-T Hetero INTERGENIC
SBS Chr8 18969110 G-C Homo INTERGENIC
SBS Chr8 19813000 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g146000
SBS Chr9 475724 C-T Homo INTERGENIC
SBS Chr9 13974658 G-A Hetero INTERGENIC
SBS Chr10 8143629 T-A Hetero INTERGENIC
SBS Chr10 20255795 A-T Hetero INTERGENIC
SBS Chr10 20255796 G-T Hetero INTERGENIC
SBS Chr11 6969309 A-C Hetero INTERGENIC
SBS Chr11 12330703 C-T Homo INTERGENIC
SBS Chr12 5312103 A-G Homo INTERGENIC
SBS Chr12 20459958 C-T Hetero INTERGENIC
SBS Chr12 21049584 A-G Hetero INTERGENIC
SBS Chr12 23362752 C-A Homo UTR_5_PRIME

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4972505 4972632 127
Deletion Chr5 9776100 9776101 1
Deletion Chr5 11190934 11190941 7
Deletion Chr11 12641742 12641744 2
Deletion Chr10 16240633 16240634 1
Deletion Chr3 16554001 16575000 20999 2
Deletion Chr5 21914744 21914745 1
Deletion Chr4 24459001 24473000 13999
Deletion Chr12 26250501 26250689 188
Deletion Chr2 30013001 30021000 7999

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16872679 16872682 2
Insertion Chr3 23241427 23241430 2
Insertion Chr7 11552155 11552158 2
Insertion Chr8 24158174 24158177 2
Insertion Chr11 6876528 6876531 2
Insertion Chr11 13314445 13314448 2
Insertion Chr11 15434545 15434548 2
Insertion Chr12 9071882 9071887 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 25452974 25460961

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 577929 Chr1 39742942 OsKitaake01g429600
Translocation Chr10 578028 Chr1 39742943 OsKitaake01g429600
Translocation Chr10 578029 Chr4 25435928 OsKitaake04g174300
Translocation Chr10 578321 Chr4 25460946

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4208167	C-T	Hetero	INTRON
SBS	Chr1	13258248	T-A	Homo	INTERGENIC
SBS	Chr1	13258268	G-C	Homo	INTERGENIC
SBS	Chr1	24314429	A-T	Hetero	INTERGENIC
SBS	Chr1	40661274	G-T	Homo	STOP_GAINED	OsKitaake01g442100
SBS	Chr2	11626995	T-A	Hetero	INTERGENIC
SBS	Chr2	17095068	C-T	Hetero	INTERGENIC
SBS	Chr2	36287998	A-T	Hetero	INTERGENIC
SBS	Chr3	1516488	A-G	Homo	INTERGENIC
SBS	Chr3	2373343	A-T	Hetero	INTERGENIC
SBS	Chr3	19969616	T-C	Homo	INTRON
SBS	Chr3	20101410	C-A	Hetero	INTERGENIC
SBS	Chr3	28542708	G-T	Hetero	INTERGENIC
SBS	Chr3	33380328	A-T	Hetero	INTRON
SBS	Chr3	37781360	C-T	Hetero	INTRON
SBS	Chr4	15202236	G-A	Hetero	INTERGENIC
SBS	Chr4	19308297	G-A	Hetero	INTERGENIC
SBS	Chr4	28407202	T-C	Hetero	INTRON
SBS	Chr4	30143337	G-A	Hetero	INTERGENIC
SBS	Chr5	2765959	T-G	Hetero	INTRON
SBS	Chr5	8609805	G-A	Homo	INTERGENIC
SBS	Chr5	12041086	T-A	Homo	INTERGENIC
SBS	Chr6	8020049	G-A	Hetero	INTERGENIC
SBS	Chr6	18691009	G-C	Hetero	INTERGENIC
SBS	Chr7	1731145	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g024200
SBS	Chr7	7451081	T-C	Hetero	INTERGENIC
SBS	Chr7	13307538	A-T	Hetero	INTRON
SBS	Chr7	16249853	G-T	Hetero	INTRON
SBS	Chr8	7708372	C-A	Hetero	INTERGENIC
SBS	Chr8	16628410	A-T	Homo	INTERGENIC
SBS	Chr8	17433195	C-T	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Homo	INTERGENIC
SBS	Chr8	19813000	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g146000
SBS	Chr9	475724	C-T	Homo	INTERGENIC
SBS	Chr9	13974658	G-A	Hetero	INTERGENIC
SBS	Chr10	8143629	T-A	Hetero	INTERGENIC
SBS	Chr10	20255795	A-T	Hetero	INTERGENIC
SBS	Chr10	20255796	G-T	Hetero	INTERGENIC
SBS	Chr11	6969309	A-C	Hetero	INTERGENIC
SBS	Chr11	12330703	C-T	Homo	INTERGENIC
SBS	Chr12	5312103	A-G	Homo	INTERGENIC
SBS	Chr12	20459958	C-T	Hetero	INTERGENIC
SBS	Chr12	21049584	A-G	Hetero	INTERGENIC
SBS	Chr12	23362752	C-A	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4972505	4972632	127
Deletion	Chr5	9776100	9776101	1
Deletion	Chr5	11190934	11190941	7
Deletion	Chr11	12641742	12641744	2
Deletion	Chr10	16240633	16240634	1
Deletion	Chr3	16554001	16575000	20999	2
Deletion	Chr5	21914744	21914745	1
Deletion	Chr4	24459001	24473000	13999
Deletion	Chr12	26250501	26250689	188
Deletion	Chr2	30013001	30021000	7999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	25452974	25460961

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes