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Mutant Information

Mutant Name	FN2673-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2673-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 90

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9803512 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 20352976 A-G Hetero INTERGENIC
SBS Chr1 22406116 G-A Homo INTERGENIC
SBS Chr1 22916345 G-T Hetero INTERGENIC
SBS Chr1 23468746 G-A Homo INTERGENIC
SBS Chr1 33907786 A-G Hetero INTERGENIC
SBS Chr1 39874230 T-A Hetero INTERGENIC
SBS Chr1 40987295 A-T Homo INTERGENIC
SBS Chr2 121732 A-T Hetero INTERGENIC
SBS Chr2 203749 G-T Hetero INTERGENIC
SBS Chr2 1227400 G-A Hetero INTERGENIC
SBS Chr2 3577592 G-A Hetero INTERGENIC
SBS Chr2 7668083 T-A Hetero INTERGENIC
SBS Chr2 8061375 G-A Homo INTERGENIC
SBS Chr2 18320451 T-A Homo INTERGENIC
SBS Chr2 18428368 A-C Homo INTERGENIC
SBS Chr2 21505108 G-A Hetero INTRON
SBS Chr2 34437335 T-A Homo INTERGENIC
SBS Chr2 35585909 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g374200
SBS Chr3 5024860 A-G Homo INTERGENIC
SBS Chr3 6383721 T-C Homo INTERGENIC
SBS Chr3 11803962 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 12848984 G-T Hetero INTERGENIC
SBS Chr3 14225692 T-C Hetero INTERGENIC
SBS Chr3 17524645 C-T Hetero INTERGENIC
SBS Chr3 19464182 G-A Hetero INTERGENIC
SBS Chr3 19503061 T-C Hetero INTERGENIC
SBS Chr3 23153923 G-C Hetero INTERGENIC
SBS Chr3 23972790 T-C Hetero INTERGENIC
SBS Chr3 27144879 A-T Hetero UTR_5_PRIME
SBS Chr3 28795340 A-T Hetero INTERGENIC
SBS Chr3 29927582 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g313200
SBS Chr3 30371529 T-A Hetero INTRON
SBS Chr3 30371555 C-T Hetero INTRON
SBS Chr3 34577078 A-G Hetero INTRON
SBS Chr4 7366370 C-T Hetero INTERGENIC
SBS Chr4 14054169 G-A Hetero INTERGENIC
SBS Chr4 22682030 G-A Hetero INTERGENIC
SBS Chr4 24905395 C-A Hetero INTERGENIC
SBS Chr4 24923346 G-A Hetero INTERGENIC
SBS Chr4 27494435 A-T Homo INTRON
SBS Chr4 29840903 A-T Hetero INTERGENIC
SBS Chr4 34612188 G-A Hetero INTRON
SBS Chr5 3703058 T-C Hetero INTERGENIC
SBS Chr5 4815028 G-A Hetero INTERGENIC
SBS Chr5 6117196 G-T Hetero UTR_3_PRIME
SBS Chr5 8307377 A-G Hetero INTERGENIC
SBS Chr5 10556773 C-A Hetero INTERGENIC
SBS Chr5 17327122 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g132900
SBS Chr5 19106007 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g149300
SBS Chr5 19181839 C-T Hetero INTERGENIC
SBS Chr5 20254719 A-G Hetero INTERGENIC
SBS Chr5 22775665 C-T Hetero INTERGENIC
SBS Chr6 11042907 G-A Hetero INTERGENIC
SBS Chr6 29978772 A-G Hetero INTERGENIC
SBS Chr7 385020 C-T Hetero INTERGENIC
SBS Chr7 1494950 C-T Homo INTERGENIC
SBS Chr7 10860418 T-A Homo INTRON
SBS Chr7 12062376 C-T Hetero INTERGENIC
SBS Chr7 13789895 G-T Hetero INTRON
SBS Chr7 14744198 C-T Hetero INTERGENIC
SBS Chr8 4101513 G-A Hetero INTERGENIC
SBS Chr8 4283337 T-A Hetero INTERGENIC
SBS Chr8 11988194 C-T Homo INTERGENIC
SBS Chr8 17234314 T-A Homo INTERGENIC
SBS Chr8 19296883 T-C Hetero INTERGENIC
SBS Chr8 20388927 G-T Homo INTERGENIC
SBS Chr8 20956164 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g157232
SBS Chr8 26217980 A-G Homo INTERGENIC
SBS Chr9 1029241 C-G Hetero INTERGENIC
SBS Chr9 2106116 A-G Hetero INTERGENIC
SBS Chr9 8327349 T-C Hetero INTERGENIC
SBS Chr9 10816850 G-A Hetero INTERGENIC
SBS Chr9 20831987 T-C Hetero INTRON
SBS Chr9 22601990 G-T Hetero INTERGENIC
SBS Chr10 10039541 T-C Homo INTERGENIC
SBS Chr10 10803709 G-A Hetero INTERGENIC
SBS Chr11 1338964 G-T Hetero INTERGENIC
SBS Chr11 4568505 C-T Hetero INTERGENIC
SBS Chr11 4802055 G-A Hetero INTERGENIC
SBS Chr11 8629371 T-C Hetero INTERGENIC
SBS Chr11 15311239 G-T Hetero INTERGENIC
SBS Chr11 23524395 G-A Hetero INTRON
SBS Chr11 26134314 A-G Hetero INTERGENIC
SBS Chr11 29320463 G-A Hetero INTERGENIC
SBS Chr12 1081215 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g016300
SBS Chr12 7671905 G-A Hetero INTERGENIC
SBS Chr12 8621929 C-G Homo INTERGENIC
SBS Chr12 12658006 G-A Hetero INTERGENIC
SBS Chr12 16981367 C-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2603229 2603233 4
Deletion Chr11 2951170 2951176 6 OsKitaake11g041801
Deletion Chr8 5576876 5576888 12
Deletion Chr10 7844288 7844296 8
Deletion Chr12 9339041 9339043 2
Deletion Chr5 10498102 10498104 2
Deletion Chr7 10834001 10856000 21999 OsKitaake07g102700
Deletion Chr7 12385946 12385975 29
Deletion Chr11 12648363 12648370 7
Deletion Chr2 15809149 15809188 39
Deletion Chr10 16507946 16507947 1
Deletion Chr10 16577784 16577787 3 OsKitaake10g112900
Deletion Chr10 16872079 16872084 5
Deletion Chr2 18424625 18424632 7
Deletion Chr11 19180709 19180710 1
Deletion Chr11 20185831 20185852 21
Deletion Chr9 21586773 21586774 1
Deletion Chr6 25579855 25579867 12
Deletion Chr8 26249316 26249317 1
Deletion Chr3 29271754 29271756 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4926523 4926525 1
Insertion Chr1 8972525 8972528 2
Insertion Chr3 33922212 33922215 2
Insertion Chr4 6383866 6383871 4
Insertion Chr2 14377552 14377554 1 OsKitaake02g155500

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1241046 1507761 OsKitaake08g018600
Inversion Chr8 1241104 1507765 OsKitaake08g018600
Inversion Chr9 20603648 20831613 OsKitaake09g177400
Inversion Chr9 20603655 20831624 OsKitaake09g177400
Inversion Chr1 38934297 39403070
Inversion Chr1 38934312 39403089

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13263882 Chr4 16750606 OsKitaake04g082300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9803512	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	20352976	A-G	Hetero	INTERGENIC
SBS	Chr1	22406116	G-A	Homo	INTERGENIC
SBS	Chr1	22916345	G-T	Hetero	INTERGENIC
SBS	Chr1	23468746	G-A	Homo	INTERGENIC
SBS	Chr1	33907786	A-G	Hetero	INTERGENIC
SBS	Chr1	39874230	T-A	Hetero	INTERGENIC
SBS	Chr1	40987295	A-T	Homo	INTERGENIC
SBS	Chr2	121732	A-T	Hetero	INTERGENIC
SBS	Chr2	203749	G-T	Hetero	INTERGENIC
SBS	Chr2	1227400	G-A	Hetero	INTERGENIC
SBS	Chr2	3577592	G-A	Hetero	INTERGENIC
SBS	Chr2	7668083	T-A	Hetero	INTERGENIC
SBS	Chr2	8061375	G-A	Homo	INTERGENIC
SBS	Chr2	18320451	T-A	Homo	INTERGENIC
SBS	Chr2	18428368	A-C	Homo	INTERGENIC
SBS	Chr2	21505108	G-A	Hetero	INTRON
SBS	Chr2	34437335	T-A	Homo	INTERGENIC
SBS	Chr2	35585909	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g374200
SBS	Chr3	5024860	A-G	Homo	INTERGENIC
SBS	Chr3	6383721	T-C	Homo	INTERGENIC
SBS	Chr3	11803962	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	12848984	G-T	Hetero	INTERGENIC
SBS	Chr3	14225692	T-C	Hetero	INTERGENIC
SBS	Chr3	17524645	C-T	Hetero	INTERGENIC
SBS	Chr3	19464182	G-A	Hetero	INTERGENIC
SBS	Chr3	19503061	T-C	Hetero	INTERGENIC
SBS	Chr3	23153923	G-C	Hetero	INTERGENIC
SBS	Chr3	23972790	T-C	Hetero	INTERGENIC
SBS	Chr3	27144879	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	28795340	A-T	Hetero	INTERGENIC
SBS	Chr3	29927582	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g313200
SBS	Chr3	30371529	T-A	Hetero	INTRON
SBS	Chr3	30371555	C-T	Hetero	INTRON
SBS	Chr3	34577078	A-G	Hetero	INTRON
SBS	Chr4	7366370	C-T	Hetero	INTERGENIC
SBS	Chr4	14054169	G-A	Hetero	INTERGENIC
SBS	Chr4	22682030	G-A	Hetero	INTERGENIC
SBS	Chr4	24905395	C-A	Hetero	INTERGENIC
SBS	Chr4	24923346	G-A	Hetero	INTERGENIC
SBS	Chr4	27494435	A-T	Homo	INTRON
SBS	Chr4	29840903	A-T	Hetero	INTERGENIC
SBS	Chr4	34612188	G-A	Hetero	INTRON
SBS	Chr5	3703058	T-C	Hetero	INTERGENIC
SBS	Chr5	4815028	G-A	Hetero	INTERGENIC
SBS	Chr5	6117196	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	8307377	A-G	Hetero	INTERGENIC
SBS	Chr5	10556773	C-A	Hetero	INTERGENIC
SBS	Chr5	17327122	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g132900
SBS	Chr5	19106007	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g149300
SBS	Chr5	19181839	C-T	Hetero	INTERGENIC
SBS	Chr5	20254719	A-G	Hetero	INTERGENIC
SBS	Chr5	22775665	C-T	Hetero	INTERGENIC
SBS	Chr6	11042907	G-A	Hetero	INTERGENIC
SBS	Chr6	29978772	A-G	Hetero	INTERGENIC
SBS	Chr7	385020	C-T	Hetero	INTERGENIC
SBS	Chr7	1494950	C-T	Homo	INTERGENIC
SBS	Chr7	10860418	T-A	Homo	INTRON
SBS	Chr7	12062376	C-T	Hetero	INTERGENIC
SBS	Chr7	13789895	G-T	Hetero	INTRON
SBS	Chr7	14744198	C-T	Hetero	INTERGENIC
SBS	Chr8	4101513	G-A	Hetero	INTERGENIC
SBS	Chr8	4283337	T-A	Hetero	INTERGENIC
SBS	Chr8	11988194	C-T	Homo	INTERGENIC
SBS	Chr8	17234314	T-A	Homo	INTERGENIC
SBS	Chr8	19296883	T-C	Hetero	INTERGENIC
SBS	Chr8	20388927	G-T	Homo	INTERGENIC
SBS	Chr8	20956164	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g157232
SBS	Chr8	26217980	A-G	Homo	INTERGENIC
SBS	Chr9	1029241	C-G	Hetero	INTERGENIC
SBS	Chr9	2106116	A-G	Hetero	INTERGENIC
SBS	Chr9	8327349	T-C	Hetero	INTERGENIC
SBS	Chr9	10816850	G-A	Hetero	INTERGENIC
SBS	Chr9	20831987	T-C	Hetero	INTRON
SBS	Chr9	22601990	G-T	Hetero	INTERGENIC
SBS	Chr10	10039541	T-C	Homo	INTERGENIC
SBS	Chr10	10803709	G-A	Hetero	INTERGENIC
SBS	Chr11	1338964	G-T	Hetero	INTERGENIC
SBS	Chr11	4568505	C-T	Hetero	INTERGENIC
SBS	Chr11	4802055	G-A	Hetero	INTERGENIC
SBS	Chr11	8629371	T-C	Hetero	INTERGENIC
SBS	Chr11	15311239	G-T	Hetero	INTERGENIC
SBS	Chr11	23524395	G-A	Hetero	INTRON
SBS	Chr11	26134314	A-G	Hetero	INTERGENIC
SBS	Chr11	29320463	G-A	Hetero	INTERGENIC
SBS	Chr12	1081215	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g016300
SBS	Chr12	7671905	G-A	Hetero	INTERGENIC
SBS	Chr12	8621929	C-G	Homo	INTERGENIC
SBS	Chr12	12658006	G-A	Hetero	INTERGENIC
SBS	Chr12	16981367	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2603229	2603233	4
Deletion	Chr11	2951170	2951176	6	OsKitaake11g041801
Deletion	Chr8	5576876	5576888	12
Deletion	Chr10	7844288	7844296	8
Deletion	Chr12	9339041	9339043	2
Deletion	Chr5	10498102	10498104	2
Deletion	Chr7	10834001	10856000	21999	OsKitaake07g102700
Deletion	Chr7	12385946	12385975	29
Deletion	Chr11	12648363	12648370	7
Deletion	Chr2	15809149	15809188	39
Deletion	Chr10	16507946	16507947	1
Deletion	Chr10	16577784	16577787	3	OsKitaake10g112900
Deletion	Chr10	16872079	16872084	5
Deletion	Chr2	18424625	18424632	7
Deletion	Chr11	19180709	19180710	1
Deletion	Chr11	20185831	20185852	21
Deletion	Chr9	21586773	21586774	1
Deletion	Chr6	25579855	25579867	12
Deletion	Chr8	26249316	26249317	1
Deletion	Chr3	29271754	29271756	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1241046	1507761	OsKitaake08g018600
Inversion	Chr8	1241104	1507765	OsKitaake08g018600
Inversion	Chr9	20603648	20831613	OsKitaake09g177400
Inversion	Chr9	20603655	20831624	OsKitaake09g177400
Inversion	Chr1	38934297	39403070
Inversion	Chr1	38934312	39403089

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes