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Mutant Information

Mutant Name	FN2674-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2674-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 66

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 112291 C-T Homo INTERGENIC
SBS Chr1 1977571 G-A Hetero INTRON
SBS Chr1 10531761 A-G Hetero INTERGENIC
SBS Chr1 11081203 C-G Hetero INTERGENIC
SBS Chr1 14766469 T-C Hetero INTERGENIC
SBS Chr1 41891873 T-A Hetero INTERGENIC
SBS Chr2 15021887 A-G Hetero INTERGENIC
SBS Chr2 18337877 G-A Homo INTERGENIC
SBS Chr2 22809518 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g221900
SBS Chr2 23325331 G-T Homo INTERGENIC
SBS Chr2 27110222 C-T Homo INTERGENIC
SBS Chr3 2268198 G-T Hetero INTERGENIC
SBS Chr3 2379099 C-T Hetero INTERGENIC
SBS Chr3 8345355 G-T Homo INTRON
SBS Chr3 9395570 A-T Hetero INTRON
SBS Chr3 13126476 G-A Hetero INTERGENIC
SBS Chr3 19561593 G-A Hetero INTERGENIC
SBS Chr3 23488715 C-T Hetero INTERGENIC
SBS Chr3 35086158 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g383900
SBS Chr3 35988823 A-G Hetero INTRON
SBS Chr3 36608225 A-G Hetero INTRON
SBS Chr4 17215482 G-A Hetero INTERGENIC
SBS Chr4 26733721 C-A Homo INTRON
SBS Chr4 35425302 C-A Hetero INTERGENIC
SBS Chr5 728006 G-A Hetero INTRON
SBS Chr5 12149273 C-A Hetero INTERGENIC
SBS Chr5 21389255 C-T Homo INTERGENIC
SBS Chr5 21599442 C-G Homo INTERGENIC
SBS Chr6 1849781 T-A Hetero INTERGENIC
SBS Chr6 2279350 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g029400
SBS Chr7 13834507 G-A Hetero INTERGENIC
SBS Chr7 14805500 C-T Hetero INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr7 19106508 C-A Hetero INTERGENIC
SBS Chr7 20298789 T-A Hetero INTERGENIC
SBS Chr8 2830023 A-G Homo INTERGENIC
SBS Chr8 6501129 G-T Hetero INTERGENIC
SBS Chr8 7047054 G-A Hetero INTERGENIC
SBS Chr8 9482790 T-A Hetero INTERGENIC
SBS Chr8 10178450 T-A Hetero INTERGENIC
SBS Chr8 10178451 T-A Hetero INTERGENIC
SBS Chr8 10230680 C-T Hetero INTERGENIC
SBS Chr8 11500682 A-T Hetero INTERGENIC
SBS Chr8 16642037 T-A Hetero INTERGENIC
SBS Chr8 18823304 G-C Hetero INTRON
SBS Chr9 445372 G-T Hetero INTRON
SBS Chr9 5546933 C-T Hetero INTERGENIC
SBS Chr9 7060193 A-T Hetero INTERGENIC
SBS Chr9 10662101 T-A Hetero INTERGENIC
SBS Chr9 20145695 T-A Hetero INTRON
SBS Chr10 2398844 G-T Hetero INTERGENIC
SBS Chr10 4262870 G-C Hetero INTERGENIC
SBS Chr10 7692151 G-A Hetero INTERGENIC
SBS Chr10 9847337 T-A Hetero INTERGENIC
SBS Chr10 13456870 A-T Hetero INTERGENIC
SBS Chr10 23662176 A-G Hetero INTERGENIC
SBS Chr11 3142512 A-G Homo INTRON
SBS Chr11 3684900 T-C Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 14079741 A-T Hetero INTERGENIC
SBS Chr11 20083870 G-A Hetero INTERGENIC
SBS Chr12 7237631 C-T Hetero INTERGENIC
SBS Chr12 8508889 G-T Hetero INTERGENIC
SBS Chr12 11997162 G-A Hetero INTERGENIC
SBS Chr12 15343946 C-G Hetero INTERGENIC
SBS Chr12 17516719 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1396487 1396493 6
Deletion Chr6 1744908 1744910 2
Deletion Chr2 10043153 10043163 10
Deletion Chr5 10928001 10937000 8999
Deletion Chr2 11444391 11444403 12
Deletion Chr2 16761224 16761227 3
Deletion Chr2 22329155 22329160 5
Deletion Chr4 24936077 24936078 1
Deletion Chr2 26641001 26696000 54999 7
Deletion Chr1 27418001 27444000 25999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11619249 11619252 2
Insertion Chr4 19348015 19348019 3
Insertion Chr9 19668113 19668116 2
Insertion Chr9 19841116 19841118 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9644939 9969665
Inversion Chr4 14096560 14170500
Inversion Chr4 14096697 14170506
Inversion Chr11 14444788 14700787
Inversion Chr11 14541140 14700782 OsKitaake11g121200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 9645070 Chr6 2923003 OsKitaake06g039900
Translocation Chr10 9648134 Chr6 2922987 OsKitaake06g039900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	112291	C-T	Homo	INTERGENIC
SBS	Chr1	1977571	G-A	Hetero	INTRON
SBS	Chr1	10531761	A-G	Hetero	INTERGENIC
SBS	Chr1	11081203	C-G	Hetero	INTERGENIC
SBS	Chr1	14766469	T-C	Hetero	INTERGENIC
SBS	Chr1	41891873	T-A	Hetero	INTERGENIC
SBS	Chr2	15021887	A-G	Hetero	INTERGENIC
SBS	Chr2	18337877	G-A	Homo	INTERGENIC
SBS	Chr2	22809518	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g221900
SBS	Chr2	23325331	G-T	Homo	INTERGENIC
SBS	Chr2	27110222	C-T	Homo	INTERGENIC
SBS	Chr3	2268198	G-T	Hetero	INTERGENIC
SBS	Chr3	2379099	C-T	Hetero	INTERGENIC
SBS	Chr3	8345355	G-T	Homo	INTRON
SBS	Chr3	9395570	A-T	Hetero	INTRON
SBS	Chr3	13126476	G-A	Hetero	INTERGENIC
SBS	Chr3	19561593	G-A	Hetero	INTERGENIC
SBS	Chr3	23488715	C-T	Hetero	INTERGENIC
SBS	Chr3	35086158	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g383900
SBS	Chr3	35988823	A-G	Hetero	INTRON
SBS	Chr3	36608225	A-G	Hetero	INTRON
SBS	Chr4	17215482	G-A	Hetero	INTERGENIC
SBS	Chr4	26733721	C-A	Homo	INTRON
SBS	Chr4	35425302	C-A	Hetero	INTERGENIC
SBS	Chr5	728006	G-A	Hetero	INTRON
SBS	Chr5	12149273	C-A	Hetero	INTERGENIC
SBS	Chr5	21389255	C-T	Homo	INTERGENIC
SBS	Chr5	21599442	C-G	Homo	INTERGENIC
SBS	Chr6	1849781	T-A	Hetero	INTERGENIC
SBS	Chr6	2279350	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g029400
SBS	Chr7	13834507	G-A	Hetero	INTERGENIC
SBS	Chr7	14805500	C-T	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr7	19106508	C-A	Hetero	INTERGENIC
SBS	Chr7	20298789	T-A	Hetero	INTERGENIC
SBS	Chr8	2830023	A-G	Homo	INTERGENIC
SBS	Chr8	6501129	G-T	Hetero	INTERGENIC
SBS	Chr8	7047054	G-A	Hetero	INTERGENIC
SBS	Chr8	9482790	T-A	Hetero	INTERGENIC
SBS	Chr8	10178450	T-A	Hetero	INTERGENIC
SBS	Chr8	10178451	T-A	Hetero	INTERGENIC
SBS	Chr8	10230680	C-T	Hetero	INTERGENIC
SBS	Chr8	11500682	A-T	Hetero	INTERGENIC
SBS	Chr8	16642037	T-A	Hetero	INTERGENIC
SBS	Chr8	18823304	G-C	Hetero	INTRON
SBS	Chr9	445372	G-T	Hetero	INTRON
SBS	Chr9	5546933	C-T	Hetero	INTERGENIC
SBS	Chr9	7060193	A-T	Hetero	INTERGENIC
SBS	Chr9	10662101	T-A	Hetero	INTERGENIC
SBS	Chr9	20145695	T-A	Hetero	INTRON
SBS	Chr10	2398844	G-T	Hetero	INTERGENIC
SBS	Chr10	4262870	G-C	Hetero	INTERGENIC
SBS	Chr10	7692151	G-A	Hetero	INTERGENIC
SBS	Chr10	9847337	T-A	Hetero	INTERGENIC
SBS	Chr10	13456870	A-T	Hetero	INTERGENIC
SBS	Chr10	23662176	A-G	Hetero	INTERGENIC
SBS	Chr11	3142512	A-G	Homo	INTRON
SBS	Chr11	3684900	T-C	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	14079741	A-T	Hetero	INTERGENIC
SBS	Chr11	20083870	G-A	Hetero	INTERGENIC
SBS	Chr12	7237631	C-T	Hetero	INTERGENIC
SBS	Chr12	8508889	G-T	Hetero	INTERGENIC
SBS	Chr12	11997162	G-A	Hetero	INTERGENIC
SBS	Chr12	15343946	C-G	Hetero	INTERGENIC
SBS	Chr12	17516719	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1396487	1396493	6
Deletion	Chr6	1744908	1744910	2
Deletion	Chr2	10043153	10043163	10
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr2	11444391	11444403	12
Deletion	Chr2	16761224	16761227	3
Deletion	Chr2	22329155	22329160	5
Deletion	Chr4	24936077	24936078	1
Deletion	Chr2	26641001	26696000	54999	7
Deletion	Chr1	27418001	27444000	25999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9644939	9969665
Inversion	Chr4	14096560	14170500
Inversion	Chr4	14096697	14170506
Inversion	Chr11	14444788	14700787
Inversion	Chr11	14541140	14700782	OsKitaake11g121200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes