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Mutant Information

Mutant Name	FN2675-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2675-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3688779 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g049300
SBS Chr1 11933869 C-T Hetero INTERGENIC
SBS Chr1 25003953 A-C Hetero UTR_5_PRIME
SBS Chr2 8305108 G-A Homo INTERGENIC
SBS Chr2 24940513 G-T Hetero INTERGENIC
SBS Chr2 25777834 C-T Hetero INTERGENIC
SBS Chr3 33781821 C-T Hetero INTERGENIC
SBS Chr4 22072424 C-A Hetero INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr4 27556559 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 31038258 G-A Hetero INTERGENIC
SBS Chr4 35506543 A-C Hetero INTERGENIC
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr5 21867061 A-T Hetero INTERGENIC
SBS Chr7 21094161 C-T Homo INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 10172913 G-A Hetero INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 28729617 G-C Hetero INTERGENIC
SBS Chr9 7126473 G-T Homo INTERGENIC
SBS Chr9 17586905 A-T Hetero INTERGENIC
SBS Chr10 2820456 G-T Hetero INTERGENIC
SBS Chr10 4700465 A-G Homo INTERGENIC
SBS Chr10 12073291 G-A Hetero INTERGENIC
SBS Chr10 17237047 T-A Homo INTERGENIC
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 21789301 T-A Hetero INTERGENIC
SBS Chr12 3143369 G-A Hetero INTERGENIC
SBS Chr12 6195380 G-C Hetero INTERGENIC
SBS Chr12 12592674 C-T Homo INTERGENIC
SBS Chr12 12855952 C-T Hetero INTERGENIC
SBS Chr12 15842612 C-A Hetero UTR_5_PRIME

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1678595 1678597 2
Deletion Chr9 1947996 1948016 20
Deletion Chr10 3567382 3567473 91
Deletion Chr11 4342186 4342190 4
Deletion Chr11 5322174 5322179 5
Deletion Chr7 5402297 5402298 1
Deletion Chr1 7583865 7583869 4 OsKitaake01g095200
Deletion Chr9 10029931 10029938 7
Deletion Chr4 10285355 10285365 10
Deletion Chr12 11402648 11402649 1
Deletion Chr12 16120200 16120203 3
Deletion Chr10 17661880 17661887 7 OsKitaake10g121200
Deletion Chr7 20692844 20692847 3 OsKitaake07g170200
Deletion Chr6 21895824 21895827 3
Deletion Chr7 22793688 22793690 2 OsKitaake07g195900
Deletion Chr11 24912070 24912071 1
Deletion Chr3 28579658 28579666 8
Deletion Chr1 30505237 30505238 1
Deletion Chr1 33775221 33775248 27
Deletion Chr1 36944614 36944618 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr4 17314186 17314189 2
Insertion Chr4 17689269 17689272 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 22057142 22541298
Inversion Chr11 22058698 22594053
Inversion Chr11 22541362 22793943 OsKitaake11g180700
Inversion Chr11 22594045 22793937 OsKitaake11g180700
Inversion Chr5 27088068 28029996 2
Inversion Chr5 27088072 28029995 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1311439 Chr1 4201227 OsKitaake01g056200
Translocation Chr10 1324456 Chr1 4201238 OsKitaake01g056200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3688779	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g049300
SBS	Chr1	11933869	C-T	Hetero	INTERGENIC
SBS	Chr1	25003953	A-C	Hetero	UTR_5_PRIME
SBS	Chr2	8305108	G-A	Homo	INTERGENIC
SBS	Chr2	24940513	G-T	Hetero	INTERGENIC
SBS	Chr2	25777834	C-T	Hetero	INTERGENIC
SBS	Chr3	33781821	C-T	Hetero	INTERGENIC
SBS	Chr4	22072424	C-A	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr4	27556559	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31038258	G-A	Hetero	INTERGENIC
SBS	Chr4	35506543	A-C	Hetero	INTERGENIC
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr5	21867061	A-T	Hetero	INTERGENIC
SBS	Chr7	21094161	C-T	Homo	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	10172913	G-A	Hetero	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	28729617	G-C	Hetero	INTERGENIC
SBS	Chr9	7126473	G-T	Homo	INTERGENIC
SBS	Chr9	17586905	A-T	Hetero	INTERGENIC
SBS	Chr10	2820456	G-T	Hetero	INTERGENIC
SBS	Chr10	4700465	A-G	Homo	INTERGENIC
SBS	Chr10	12073291	G-A	Hetero	INTERGENIC
SBS	Chr10	17237047	T-A	Homo	INTERGENIC
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	21789301	T-A	Hetero	INTERGENIC
SBS	Chr12	3143369	G-A	Hetero	INTERGENIC
SBS	Chr12	6195380	G-C	Hetero	INTERGENIC
SBS	Chr12	12592674	C-T	Homo	INTERGENIC
SBS	Chr12	12855952	C-T	Hetero	INTERGENIC
SBS	Chr12	15842612	C-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1678595	1678597	2
Deletion	Chr9	1947996	1948016	20
Deletion	Chr10	3567382	3567473	91
Deletion	Chr11	4342186	4342190	4
Deletion	Chr11	5322174	5322179	5
Deletion	Chr7	5402297	5402298	1
Deletion	Chr1	7583865	7583869	4	OsKitaake01g095200
Deletion	Chr9	10029931	10029938	7
Deletion	Chr4	10285355	10285365	10
Deletion	Chr12	11402648	11402649	1
Deletion	Chr12	16120200	16120203	3
Deletion	Chr10	17661880	17661887	7	OsKitaake10g121200
Deletion	Chr7	20692844	20692847	3	OsKitaake07g170200
Deletion	Chr6	21895824	21895827	3
Deletion	Chr7	22793688	22793690	2	OsKitaake07g195900
Deletion	Chr11	24912070	24912071	1
Deletion	Chr3	28579658	28579666	8
Deletion	Chr1	30505237	30505238	1
Deletion	Chr1	33775221	33775248	27
Deletion	Chr1	36944614	36944618	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	22057142	22541298
Inversion	Chr11	22058698	22594053
Inversion	Chr11	22541362	22793943	OsKitaake11g180700
Inversion	Chr11	22594045	22793937	OsKitaake11g180700
Inversion	Chr5	27088068	28029996	2
Inversion	Chr5	27088072	28029995	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes