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Mutant Information

Mutant Name	FN2677-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2677-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10888535 G-A Homo INTERGENIC
SBS Chr1 19417343 G-C Homo INTERGENIC
SBS Chr1 24523092 G-C Hetero INTERGENIC
SBS Chr1 32314881 A-G Hetero INTERGENIC
SBS Chr1 38144193 G-A Hetero INTERGENIC
SBS Chr2 5129508 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g070900
SBS Chr2 21112708 C-T Hetero INTERGENIC
SBS Chr2 31128630 G-A Hetero INTERGENIC
SBS Chr2 34234974 G-T Hetero INTERGENIC
SBS Chr3 588715 C-T Hetero INTRON
SBS Chr3 1060091 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g016500
SBS Chr3 1060093 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g016500
SBS Chr3 1420815 A-G Hetero INTERGENIC
SBS Chr3 6376780 C-A Hetero INTERGENIC
SBS Chr3 20662461 G-C Hetero INTRON
SBS Chr3 31979891 C-T Hetero INTRON
SBS Chr4 7528247 T-C Hetero INTERGENIC
SBS Chr4 12422486 T-G Hetero INTERGENIC
SBS Chr5 1263985 C-A Hetero INTRON
SBS Chr5 5055582 C-A Homo INTERGENIC
SBS Chr5 5055583 T-A Homo INTERGENIC
SBS Chr5 8749948 T-C Hetero INTERGENIC
SBS Chr5 20608974 G-A Hetero INTERGENIC
SBS Chr6 7382090 C-G Hetero INTERGENIC
SBS Chr6 10820040 T-C Hetero INTERGENIC
SBS Chr6 11087237 G-T Hetero INTERGENIC
SBS Chr6 15644439 G-A Hetero INTERGENIC
SBS Chr6 25839078 G-A Hetero INTERGENIC
SBS Chr7 24294 C-T Homo INTERGENIC
SBS Chr7 1898384 C-T Homo INTERGENIC
SBS Chr7 5814321 G-A Hetero INTERGENIC
SBS Chr7 11586625 C-A Hetero INTERGENIC
SBS Chr7 14283394 G-A Hetero INTERGENIC
SBS Chr7 19508926 C-T Hetero INTERGENIC
SBS Chr7 29429579 A-T Hetero INTERGENIC
SBS Chr8 10042916 C-A Hetero INTERGENIC
SBS Chr8 14104195 A-T Hetero INTERGENIC
SBS Chr8 17455107 G-T Hetero INTRON
SBS Chr8 22159093 A-T Homo INTERGENIC
SBS Chr9 404067 C-G Hetero INTERGENIC
SBS Chr9 9767237 A-G Hetero INTERGENIC
SBS Chr9 13999546 G-A Hetero INTERGENIC
SBS Chr10 8447456 G-A Hetero INTERGENIC
SBS Chr10 19341959 G-A Hetero INTERGENIC
SBS Chr11 14674333 C-T Homo INTERGENIC
SBS Chr11 16627361 A-C Hetero INTERGENIC
SBS Chr11 18237766 C-T Hetero INTERGENIC
SBS Chr11 26982748 A-T Hetero INTERGENIC
SBS Chr11 27708662 G-T Hetero INTERGENIC
SBS Chr12 6558167 A-C Homo INTERGENIC
SBS Chr12 13282240 C-T Homo INTERGENIC
SBS Chr12 20208507 A-G Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1046215 1046216 1
Deletion Chr10 1148465 1148469 4
Deletion Chr2 1541818 1541830 12
Deletion Chr12 2379573 2379579 6
Deletion Chr1 3241556 3241565 9
Deletion Chr1 5324342 5324349 7
Deletion Chr4 13992007 13992015 8
Deletion Chr11 17831990 17831994 4
Deletion Chr1 22824333 22824343 10
Deletion Chr8 24438599 24438600 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36069658 36069661 2
Insertion Chr5 15202633 15202636 2
Insertion Chr7 11601039 11601042 2 OsKitaake07g107801
Insertion Chr11 24188791 24188794 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6916696 Chr7 27910507 OsKitaake07g261700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10888535	G-A	Homo	INTERGENIC
SBS	Chr1	19417343	G-C	Homo	INTERGENIC
SBS	Chr1	24523092	G-C	Hetero	INTERGENIC
SBS	Chr1	32314881	A-G	Hetero	INTERGENIC
SBS	Chr1	38144193	G-A	Hetero	INTERGENIC
SBS	Chr2	5129508	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g070900
SBS	Chr2	21112708	C-T	Hetero	INTERGENIC
SBS	Chr2	31128630	G-A	Hetero	INTERGENIC
SBS	Chr2	34234974	G-T	Hetero	INTERGENIC
SBS	Chr3	588715	C-T	Hetero	INTRON
SBS	Chr3	1060091	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g016500
SBS	Chr3	1060093	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g016500
SBS	Chr3	1420815	A-G	Hetero	INTERGENIC
SBS	Chr3	6376780	C-A	Hetero	INTERGENIC
SBS	Chr3	20662461	G-C	Hetero	INTRON
SBS	Chr3	31979891	C-T	Hetero	INTRON
SBS	Chr4	7528247	T-C	Hetero	INTERGENIC
SBS	Chr4	12422486	T-G	Hetero	INTERGENIC
SBS	Chr5	1263985	C-A	Hetero	INTRON
SBS	Chr5	5055582	C-A	Homo	INTERGENIC
SBS	Chr5	5055583	T-A	Homo	INTERGENIC
SBS	Chr5	8749948	T-C	Hetero	INTERGENIC
SBS	Chr5	20608974	G-A	Hetero	INTERGENIC
SBS	Chr6	7382090	C-G	Hetero	INTERGENIC
SBS	Chr6	10820040	T-C	Hetero	INTERGENIC
SBS	Chr6	11087237	G-T	Hetero	INTERGENIC
SBS	Chr6	15644439	G-A	Hetero	INTERGENIC
SBS	Chr6	25839078	G-A	Hetero	INTERGENIC
SBS	Chr7	24294	C-T	Homo	INTERGENIC
SBS	Chr7	1898384	C-T	Homo	INTERGENIC
SBS	Chr7	5814321	G-A	Hetero	INTERGENIC
SBS	Chr7	11586625	C-A	Hetero	INTERGENIC
SBS	Chr7	14283394	G-A	Hetero	INTERGENIC
SBS	Chr7	19508926	C-T	Hetero	INTERGENIC
SBS	Chr7	29429579	A-T	Hetero	INTERGENIC
SBS	Chr8	10042916	C-A	Hetero	INTERGENIC
SBS	Chr8	14104195	A-T	Hetero	INTERGENIC
SBS	Chr8	17455107	G-T	Hetero	INTRON
SBS	Chr8	22159093	A-T	Homo	INTERGENIC
SBS	Chr9	404067	C-G	Hetero	INTERGENIC
SBS	Chr9	9767237	A-G	Hetero	INTERGENIC
SBS	Chr9	13999546	G-A	Hetero	INTERGENIC
SBS	Chr10	8447456	G-A	Hetero	INTERGENIC
SBS	Chr10	19341959	G-A	Hetero	INTERGENIC
SBS	Chr11	14674333	C-T	Homo	INTERGENIC
SBS	Chr11	16627361	A-C	Hetero	INTERGENIC
SBS	Chr11	18237766	C-T	Hetero	INTERGENIC
SBS	Chr11	26982748	A-T	Hetero	INTERGENIC
SBS	Chr11	27708662	G-T	Hetero	INTERGENIC
SBS	Chr12	6558167	A-C	Homo	INTERGENIC
SBS	Chr12	13282240	C-T	Homo	INTERGENIC
SBS	Chr12	20208507	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1046215	1046216	1
Deletion	Chr10	1148465	1148469	4
Deletion	Chr2	1541818	1541830	12
Deletion	Chr12	2379573	2379579	6
Deletion	Chr1	3241556	3241565	9
Deletion	Chr1	5324342	5324349	7
Deletion	Chr4	13992007	13992015	8
Deletion	Chr11	17831990	17831994	4
Deletion	Chr1	22824333	22824343	10
Deletion	Chr8	24438599	24438600	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6916696	Chr7	27910507	OsKitaake07g261700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes