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Mutant Information

Mutant Name	FN2678-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2678-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10010342 T-A Hetero INTERGENIC
SBS Chr1 11332994 T-C Hetero UTR_5_PRIME
SBS Chr1 33127386 A-C Hetero INTRON
SBS Chr2 23181422 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 28165679 G-A Hetero INTERGENIC
SBS Chr2 33707694 G-T Hetero INTERGENIC
SBS Chr2 33809089 C-T Hetero INTERGENIC
SBS Chr2 34286268 A-T Hetero INTRON
SBS Chr3 17025707 G-A Hetero INTERGENIC
SBS Chr4 7475694 A-T Hetero INTERGENIC
SBS Chr4 7475695 C-T Hetero INTERGENIC
SBS Chr5 7154486 A-T Hetero INTERGENIC
SBS Chr5 10780512 C-T Hetero INTRON
SBS Chr6 8742670 T-G Homo INTERGENIC
SBS Chr7 5974949 A-C Hetero INTERGENIC
SBS Chr8 19390772 C-T Homo INTERGENIC
SBS Chr8 21828667 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g165066
SBS Chr10 6866603 G-A Homo INTERGENIC
SBS Chr10 18142417 G-A Hetero INTERGENIC
SBS Chr10 18142418 A-G Hetero INTERGENIC
SBS Chr10 23778111 G-A Hetero INTERGENIC
SBS Chr11 7485750 T-C Hetero INTRON
SBS Chr11 8571051 A-G Hetero INTERGENIC
SBS Chr11 24904239 A-T Hetero INTERGENIC
SBS Chr11 26740550 T-C Hetero INTERGENIC
SBS Chr11 28991243 C-T Hetero INTRON
SBS Chr12 5237368 C-A Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr3 2145872 2145880 8
Deletion Chr11 3859983 3859985 2
Deletion Chr6 11211096 11211097 1
Deletion Chr3 16733840 16733845 5
Deletion Chr9 18688465 18688473 8
Deletion Chr7 21630001 21667000 36999 5
Deletion Chr6 26078618 26078623 5
Deletion Chr2 26580001 26609000 28999 3
Deletion Chr12 26649382 26649392 10 OsKitaake12g221500
Deletion Chr4 29994728 29994732 4
Deletion Chr4 31862521 31862529 8
Deletion Chr4 33443001 33455000 11999 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 495878 495880 1
Insertion Chr4 22629146 22629149 2
Insertion Chr7 7618907 7618910 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10010342	T-A	Hetero	INTERGENIC
SBS	Chr1	11332994	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	33127386	A-C	Hetero	INTRON
SBS	Chr2	23181422	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	28165679	G-A	Hetero	INTERGENIC
SBS	Chr2	33707694	G-T	Hetero	INTERGENIC
SBS	Chr2	33809089	C-T	Hetero	INTERGENIC
SBS	Chr2	34286268	A-T	Hetero	INTRON
SBS	Chr3	17025707	G-A	Hetero	INTERGENIC
SBS	Chr4	7475694	A-T	Hetero	INTERGENIC
SBS	Chr4	7475695	C-T	Hetero	INTERGENIC
SBS	Chr5	7154486	A-T	Hetero	INTERGENIC
SBS	Chr5	10780512	C-T	Hetero	INTRON
SBS	Chr6	8742670	T-G	Homo	INTERGENIC
SBS	Chr7	5974949	A-C	Hetero	INTERGENIC
SBS	Chr8	19390772	C-T	Homo	INTERGENIC
SBS	Chr8	21828667	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g165066
SBS	Chr10	6866603	G-A	Homo	INTERGENIC
SBS	Chr10	18142417	G-A	Hetero	INTERGENIC
SBS	Chr10	18142418	A-G	Hetero	INTERGENIC
SBS	Chr10	23778111	G-A	Hetero	INTERGENIC
SBS	Chr11	7485750	T-C	Hetero	INTRON
SBS	Chr11	8571051	A-G	Hetero	INTERGENIC
SBS	Chr11	24904239	A-T	Hetero	INTERGENIC
SBS	Chr11	26740550	T-C	Hetero	INTERGENIC
SBS	Chr11	28991243	C-T	Hetero	INTRON
SBS	Chr12	5237368	C-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr3	2145872	2145880	8
Deletion	Chr11	3859983	3859985	2
Deletion	Chr6	11211096	11211097	1
Deletion	Chr3	16733840	16733845	5
Deletion	Chr9	18688465	18688473	8
Deletion	Chr7	21630001	21667000	36999	5
Deletion	Chr6	26078618	26078623	5
Deletion	Chr2	26580001	26609000	28999	3
Deletion	Chr12	26649382	26649392	10	OsKitaake12g221500
Deletion	Chr4	29994728	29994732	4
Deletion	Chr4	31862521	31862529	8
Deletion	Chr4	33443001	33455000	11999	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes