Search Kitaake

Mutant Information

Mutant Name	FN2680-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2680-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8467990 A-T Hetero INTERGENIC
SBS Chr1 16187793 C-T Homo INTERGENIC
SBS Chr1 16262777 G-A Hetero INTERGENIC
SBS Chr1 17460917 T-C Homo INTERGENIC
SBS Chr1 20663498 A-G Homo INTRON
SBS Chr1 29025375 C-A Hetero INTERGENIC
SBS Chr1 29378704 T-C Hetero UTR_3_PRIME
SBS Chr1 30627101 G-A Homo INTERGENIC
SBS Chr1 31515274 C-T Homo INTERGENIC
SBS Chr1 32557925 G-T Hetero INTERGENIC
SBS Chr1 37707783 C-T Hetero INTERGENIC
SBS Chr1 38348344 T-C Hetero INTERGENIC
SBS Chr2 10539451 G-A Hetero INTERGENIC
SBS Chr2 13129216 G-A Hetero INTERGENIC
SBS Chr2 31592229 G-A Hetero INTERGENIC
SBS Chr3 16675565 G-A Hetero INTERGENIC
SBS Chr3 21960465 C-T Hetero INTERGENIC
SBS Chr3 32523804 C-T Homo INTERGENIC
SBS Chr3 32523805 C-T Homo INTERGENIC
SBS Chr4 449212 T-A Homo INTERGENIC
SBS Chr4 1232597 A-G Hetero INTERGENIC
SBS Chr4 5074400 A-G Hetero INTERGENIC
SBS Chr4 5925586 C-T Hetero INTERGENIC
SBS Chr4 29652822 A-G Hetero INTERGENIC
SBS Chr4 33800856 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g281100
SBS Chr5 2258284 C-T Homo INTERGENIC
SBS Chr5 8760465 C-T Hetero INTERGENIC
SBS Chr5 11825171 A-G Hetero INTERGENIC
SBS Chr5 26268432 T-A Homo INTERGENIC
SBS Chr6 7488103 G-A Hetero INTERGENIC
SBS Chr7 9892429 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g097900
SBS Chr7 13634101 C-G Hetero INTERGENIC
SBS Chr7 16203596 G-A Hetero INTERGENIC
SBS Chr7 22095376 C-G Hetero INTERGENIC
SBS Chr8 7408276 C-T Hetero INTERGENIC
SBS Chr8 16734030 G-A Hetero INTERGENIC
SBS Chr8 24532900 A-G Hetero INTERGENIC
SBS Chr8 25157406 A-C Hetero INTERGENIC
SBS Chr9 2411013 G-A Hetero INTERGENIC
SBS Chr9 6749343 T-C Hetero INTERGENIC
SBS Chr9 8672749 G-A Hetero INTERGENIC
SBS Chr9 9401839 C-A Hetero INTERGENIC
SBS Chr10 13740675 A-T Hetero INTRON
SBS Chr11 1467152 C-T Hetero INTERGENIC
SBS Chr11 8707768 G-A Homo INTERGENIC
SBS Chr11 24698328 C-G Hetero INTERGENIC
SBS Chr11 26763611 G-A Hetero INTERGENIC
SBS Chr12 5394673 G-A Hetero INTERGENIC
SBS Chr12 6301553 A-T Hetero UTR_3_PRIME
SBS Chr12 17817401 A-G Hetero INTERGENIC
SBS Chr12 18387274 T-G Hetero INTERGENIC
SBS Chr12 25277467 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g206050

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 504819 504820 1
Deletion Chr2 528627 528636 9
Deletion Chr5 3485526 3485528 2
Deletion Chr1 3626299 3626303 4
Deletion Chr7 5570390 5570391 1
Deletion Chr2 6552296 6552302 6
Deletion Chr2 10367649 10367650 1
Deletion Chr2 11592208 11592210 2
Deletion Chr6 12360768 12360774 6
Deletion Chr12 14932843 14932850 7
Deletion Chr12 19634385 19634395 10
Deletion Chr4 20276185 20276189 4
Deletion Chr6 20615124 20615138 14
Deletion Chr6 21271594 21271595 1 OsKitaake06g188500
Deletion Chr4 21760321 21760323 2
Deletion Chr6 22168278 22168279 1
Deletion Chr12 22244001 22439000 194999 12
Deletion Chr6 27120836 27120848 12
Deletion Chr11 28228001 28251000 22999 OsKitaake11g232000
Deletion Chr3 28251015 28251019 4 OsKitaake03g292100
Deletion Chr3 35952415 35952416 1
Deletion Chr2 36854264 36854296 32 OsKitaake02g394000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3924524 3924527 2
Insertion Chr3 27018465 27018469 3
Insertion Chr7 20394494 20394497 2
Insertion Chr10 3785395 3785398 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 442106 1085167 2
Inversion Chr1 442127 1085164 2
Inversion Chr11 18187926 19178600 OsKitaake11g148900
Inversion Chr11 18187931 19178598 OsKitaake11g148900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 12773444 Chr6 15638106
Translocation Chr7 12781695 Chr6 15638100
Translocation Chr5 15641211 Chr1 34749055 OsKitaake01g365500
Translocation Chr5 15641227 Chr1 34753166 OsKitaake01g365600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8467990	A-T	Hetero	INTERGENIC
SBS	Chr1	16187793	C-T	Homo	INTERGENIC
SBS	Chr1	16262777	G-A	Hetero	INTERGENIC
SBS	Chr1	17460917	T-C	Homo	INTERGENIC
SBS	Chr1	20663498	A-G	Homo	INTRON
SBS	Chr1	29025375	C-A	Hetero	INTERGENIC
SBS	Chr1	29378704	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	30627101	G-A	Homo	INTERGENIC
SBS	Chr1	31515274	C-T	Homo	INTERGENIC
SBS	Chr1	32557925	G-T	Hetero	INTERGENIC
SBS	Chr1	37707783	C-T	Hetero	INTERGENIC
SBS	Chr1	38348344	T-C	Hetero	INTERGENIC
SBS	Chr2	10539451	G-A	Hetero	INTERGENIC
SBS	Chr2	13129216	G-A	Hetero	INTERGENIC
SBS	Chr2	31592229	G-A	Hetero	INTERGENIC
SBS	Chr3	16675565	G-A	Hetero	INTERGENIC
SBS	Chr3	21960465	C-T	Hetero	INTERGENIC
SBS	Chr3	32523804	C-T	Homo	INTERGENIC
SBS	Chr3	32523805	C-T	Homo	INTERGENIC
SBS	Chr4	449212	T-A	Homo	INTERGENIC
SBS	Chr4	1232597	A-G	Hetero	INTERGENIC
SBS	Chr4	5074400	A-G	Hetero	INTERGENIC
SBS	Chr4	5925586	C-T	Hetero	INTERGENIC
SBS	Chr4	29652822	A-G	Hetero	INTERGENIC
SBS	Chr4	33800856	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g281100
SBS	Chr5	2258284	C-T	Homo	INTERGENIC
SBS	Chr5	8760465	C-T	Hetero	INTERGENIC
SBS	Chr5	11825171	A-G	Hetero	INTERGENIC
SBS	Chr5	26268432	T-A	Homo	INTERGENIC
SBS	Chr6	7488103	G-A	Hetero	INTERGENIC
SBS	Chr7	9892429	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g097900
SBS	Chr7	13634101	C-G	Hetero	INTERGENIC
SBS	Chr7	16203596	G-A	Hetero	INTERGENIC
SBS	Chr7	22095376	C-G	Hetero	INTERGENIC
SBS	Chr8	7408276	C-T	Hetero	INTERGENIC
SBS	Chr8	16734030	G-A	Hetero	INTERGENIC
SBS	Chr8	24532900	A-G	Hetero	INTERGENIC
SBS	Chr8	25157406	A-C	Hetero	INTERGENIC
SBS	Chr9	2411013	G-A	Hetero	INTERGENIC
SBS	Chr9	6749343	T-C	Hetero	INTERGENIC
SBS	Chr9	8672749	G-A	Hetero	INTERGENIC
SBS	Chr9	9401839	C-A	Hetero	INTERGENIC
SBS	Chr10	13740675	A-T	Hetero	INTRON
SBS	Chr11	1467152	C-T	Hetero	INTERGENIC
SBS	Chr11	8707768	G-A	Homo	INTERGENIC
SBS	Chr11	24698328	C-G	Hetero	INTERGENIC
SBS	Chr11	26763611	G-A	Hetero	INTERGENIC
SBS	Chr12	5394673	G-A	Hetero	INTERGENIC
SBS	Chr12	6301553	A-T	Hetero	UTR_3_PRIME
SBS	Chr12	17817401	A-G	Hetero	INTERGENIC
SBS	Chr12	18387274	T-G	Hetero	INTERGENIC
SBS	Chr12	25277467	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g206050

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	504819	504820	1
Deletion	Chr2	528627	528636	9
Deletion	Chr5	3485526	3485528	2
Deletion	Chr1	3626299	3626303	4
Deletion	Chr7	5570390	5570391	1
Deletion	Chr2	6552296	6552302	6
Deletion	Chr2	10367649	10367650	1
Deletion	Chr2	11592208	11592210	2
Deletion	Chr6	12360768	12360774	6
Deletion	Chr12	14932843	14932850	7
Deletion	Chr12	19634385	19634395	10
Deletion	Chr4	20276185	20276189	4
Deletion	Chr6	20615124	20615138	14
Deletion	Chr6	21271594	21271595	1	OsKitaake06g188500
Deletion	Chr4	21760321	21760323	2
Deletion	Chr6	22168278	22168279	1
Deletion	Chr12	22244001	22439000	194999	12
Deletion	Chr6	27120836	27120848	12
Deletion	Chr11	28228001	28251000	22999	OsKitaake11g232000
Deletion	Chr3	28251015	28251019	4	OsKitaake03g292100
Deletion	Chr3	35952415	35952416	1
Deletion	Chr2	36854264	36854296	32	OsKitaake02g394000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	442106	1085167	2
Inversion	Chr1	442127	1085164	2
Inversion	Chr11	18187926	19178600	OsKitaake11g148900
Inversion	Chr11	18187931	19178598	OsKitaake11g148900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes