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Mutant Information

Mutant Name	FN2681-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2681-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 66

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8226692 C-T Hetero INTERGENIC
SBS Chr1 16627879 C-T Hetero INTERGENIC
SBS Chr1 22280874 C-T Homo INTERGENIC
SBS Chr1 29525296 G-A Homo INTERGENIC
SBS Chr1 39868635 C-A Hetero INTERGENIC
SBS Chr1 41090888 T-A Hetero INTERGENIC
SBS Chr1 44250259 G-T Hetero INTERGENIC
SBS Chr2 6237935 G-C Hetero INTERGENIC
SBS Chr2 7133960 C-G Hetero SYNONYMOUS_CODING
SBS Chr2 7842250 T-A Hetero UTR_3_PRIME
SBS Chr2 10700257 T-C Hetero INTERGENIC
SBS Chr2 15959981 G-A Hetero INTERGENIC
SBS Chr2 18396241 C-T Hetero INTERGENIC
SBS Chr2 18732388 C-A Hetero INTERGENIC
SBS Chr2 21335561 A-G Homo NON_SYNONYMOUS_CODING OsKitaake02g205700
SBS Chr2 25787680 C-T Hetero INTERGENIC
SBS Chr2 30362188 C-T Hetero INTERGENIC
SBS Chr2 33488094 C-A Hetero INTERGENIC
SBS Chr3 1961978 G-A Hetero INTERGENIC
SBS Chr3 9741588 T-A Hetero INTERGENIC
SBS Chr3 14296556 C-T Hetero INTERGENIC
SBS Chr3 14833784 C-A Hetero INTERGENIC
SBS Chr3 14863157 G-A Hetero INTERGENIC
SBS Chr3 15685461 A-C Homo INTRON
SBS Chr3 17098674 C-T Hetero UTR_3_PRIME
SBS Chr3 18957428 A-G Hetero INTERGENIC
SBS Chr3 27768280 A-T Hetero INTERGENIC
SBS Chr3 29520307 C-T Hetero INTERGENIC
SBS Chr3 29912324 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g312800
SBS Chr3 30525004 G-A Hetero INTRON
SBS Chr4 1293792 G-A Hetero INTERGENIC
SBS Chr4 7027212 C-G Homo INTERGENIC
SBS Chr4 14743667 C-A Hetero INTERGENIC
SBS Chr4 24363572 G-A Hetero INTERGENIC
SBS Chr4 25510551 C-A Hetero INTERGENIC
SBS Chr4 31575876 G-A Hetero INTERGENIC
SBS Chr4 32994301 A-G Hetero UTR_3_PRIME
SBS Chr5 18473642 C-T Homo INTERGENIC
SBS Chr5 19303163 G-T Hetero INTERGENIC
SBS Chr5 30242946 G-A Hetero INTERGENIC
SBS Chr6 9925027 C-T Hetero INTERGENIC
SBS Chr6 13863465 C-A Hetero INTERGENIC
SBS Chr6 25523212 G-A Hetero INTERGENIC
SBS Chr6 30199840 G-A Homo INTERGENIC
SBS Chr7 9137824 A-G Homo INTRON
SBS Chr7 13051752 G-A Homo INTERGENIC
SBS Chr7 26011359 A-T Hetero INTERGENIC
SBS Chr8 7464514 G-A Hetero INTERGENIC
SBS Chr8 11078776 C-G Hetero INTERGENIC
SBS Chr8 16549763 G-A Hetero INTRON
SBS Chr9 6613185 C-A Hetero INTERGENIC
SBS Chr9 14303091 G-T Hetero INTERGENIC
SBS Chr10 3280743 G-C Homo INTERGENIC
SBS Chr11 840644 A-G Hetero INTERGENIC
SBS Chr11 13433541 T-C Hetero INTERGENIC
SBS Chr11 19778311 A-G Hetero INTERGENIC
SBS Chr11 19778312 C-T Hetero INTERGENIC
SBS Chr11 22940430 T-C Homo INTERGENIC
SBS Chr11 23619917 G-A Hetero INTERGENIC
SBS Chr12 4019464 A-T Hetero INTERGENIC
SBS Chr12 4220115 G-A Hetero INTERGENIC
SBS Chr12 9098592 G-A Hetero INTERGENIC
SBS Chr12 9098593 G-A Hetero INTERGENIC
SBS Chr12 14561175 C-G Hetero INTERGENIC
SBS Chr12 21606531 A-T Hetero INTERGENIC
SBS Chr12 25717078 T-C Hetero INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1897140 1897146 6
Deletion Chr7 3395340 3395342 2
Deletion Chr7 5126674 5126676 2 OsKitaake07g062400
Deletion Chr10 5658196 5658198 2
Deletion Chr12 5910069 5910072 3
Deletion Chr4 8345709 8345776 67
Deletion Chr3 10439974 10439976 2
Deletion Chr6 11278301 11278306 5
Deletion Chr3 11876573 11876575 2
Deletion Chr5 12347628 12347635 7
Deletion Chr11 15594205 15594209 4
Deletion Chr3 15799939 15799941 2
Deletion Chr8 16081134 16081139 5
Deletion Chr3 17138596 17138602 6
Deletion Chr10 18173419 18173421 2
Deletion Chr5 28027431 28027435 4
Deletion Chr1 34097016 34097030 14
Deletion Chr4 34399001 34768000 368999 53
Deletion Chr4 35597934 35597935 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 469848 469851 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 20951320 21380527

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10465362 Chr6 20951334

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8226692	C-T	Hetero	INTERGENIC
SBS	Chr1	16627879	C-T	Hetero	INTERGENIC
SBS	Chr1	22280874	C-T	Homo	INTERGENIC
SBS	Chr1	29525296	G-A	Homo	INTERGENIC
SBS	Chr1	39868635	C-A	Hetero	INTERGENIC
SBS	Chr1	41090888	T-A	Hetero	INTERGENIC
SBS	Chr1	44250259	G-T	Hetero	INTERGENIC
SBS	Chr2	6237935	G-C	Hetero	INTERGENIC
SBS	Chr2	7133960	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	7842250	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	10700257	T-C	Hetero	INTERGENIC
SBS	Chr2	15959981	G-A	Hetero	INTERGENIC
SBS	Chr2	18396241	C-T	Hetero	INTERGENIC
SBS	Chr2	18732388	C-A	Hetero	INTERGENIC
SBS	Chr2	21335561	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g205700
SBS	Chr2	25787680	C-T	Hetero	INTERGENIC
SBS	Chr2	30362188	C-T	Hetero	INTERGENIC
SBS	Chr2	33488094	C-A	Hetero	INTERGENIC
SBS	Chr3	1961978	G-A	Hetero	INTERGENIC
SBS	Chr3	9741588	T-A	Hetero	INTERGENIC
SBS	Chr3	14296556	C-T	Hetero	INTERGENIC
SBS	Chr3	14833784	C-A	Hetero	INTERGENIC
SBS	Chr3	14863157	G-A	Hetero	INTERGENIC
SBS	Chr3	15685461	A-C	Homo	INTRON
SBS	Chr3	17098674	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	18957428	A-G	Hetero	INTERGENIC
SBS	Chr3	27768280	A-T	Hetero	INTERGENIC
SBS	Chr3	29520307	C-T	Hetero	INTERGENIC
SBS	Chr3	29912324	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g312800
SBS	Chr3	30525004	G-A	Hetero	INTRON
SBS	Chr4	1293792	G-A	Hetero	INTERGENIC
SBS	Chr4	7027212	C-G	Homo	INTERGENIC
SBS	Chr4	14743667	C-A	Hetero	INTERGENIC
SBS	Chr4	24363572	G-A	Hetero	INTERGENIC
SBS	Chr4	25510551	C-A	Hetero	INTERGENIC
SBS	Chr4	31575876	G-A	Hetero	INTERGENIC
SBS	Chr4	32994301	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	18473642	C-T	Homo	INTERGENIC
SBS	Chr5	19303163	G-T	Hetero	INTERGENIC
SBS	Chr5	30242946	G-A	Hetero	INTERGENIC
SBS	Chr6	9925027	C-T	Hetero	INTERGENIC
SBS	Chr6	13863465	C-A	Hetero	INTERGENIC
SBS	Chr6	25523212	G-A	Hetero	INTERGENIC
SBS	Chr6	30199840	G-A	Homo	INTERGENIC
SBS	Chr7	9137824	A-G	Homo	INTRON
SBS	Chr7	13051752	G-A	Homo	INTERGENIC
SBS	Chr7	26011359	A-T	Hetero	INTERGENIC
SBS	Chr8	7464514	G-A	Hetero	INTERGENIC
SBS	Chr8	11078776	C-G	Hetero	INTERGENIC
SBS	Chr8	16549763	G-A	Hetero	INTRON
SBS	Chr9	6613185	C-A	Hetero	INTERGENIC
SBS	Chr9	14303091	G-T	Hetero	INTERGENIC
SBS	Chr10	3280743	G-C	Homo	INTERGENIC
SBS	Chr11	840644	A-G	Hetero	INTERGENIC
SBS	Chr11	13433541	T-C	Hetero	INTERGENIC
SBS	Chr11	19778311	A-G	Hetero	INTERGENIC
SBS	Chr11	19778312	C-T	Hetero	INTERGENIC
SBS	Chr11	22940430	T-C	Homo	INTERGENIC
SBS	Chr11	23619917	G-A	Hetero	INTERGENIC
SBS	Chr12	4019464	A-T	Hetero	INTERGENIC
SBS	Chr12	4220115	G-A	Hetero	INTERGENIC
SBS	Chr12	9098592	G-A	Hetero	INTERGENIC
SBS	Chr12	9098593	G-A	Hetero	INTERGENIC
SBS	Chr12	14561175	C-G	Hetero	INTERGENIC
SBS	Chr12	21606531	A-T	Hetero	INTERGENIC
SBS	Chr12	25717078	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1897140	1897146	6
Deletion	Chr7	3395340	3395342	2
Deletion	Chr7	5126674	5126676	2	OsKitaake07g062400
Deletion	Chr10	5658196	5658198	2
Deletion	Chr12	5910069	5910072	3
Deletion	Chr4	8345709	8345776	67
Deletion	Chr3	10439974	10439976	2
Deletion	Chr6	11278301	11278306	5
Deletion	Chr3	11876573	11876575	2
Deletion	Chr5	12347628	12347635	7
Deletion	Chr11	15594205	15594209	4
Deletion	Chr3	15799939	15799941	2
Deletion	Chr8	16081134	16081139	5
Deletion	Chr3	17138596	17138602	6
Deletion	Chr10	18173419	18173421	2
Deletion	Chr5	28027431	28027435	4
Deletion	Chr1	34097016	34097030	14
Deletion	Chr4	34399001	34768000	368999	53
Deletion	Chr4	35597934	35597935	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	20951320	21380527

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes