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Mutant Information

Mutant Name	FN2682-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2682-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 79

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10016039 C-T Hetero INTERGENIC
SBS Chr1 11319871 T-C Hetero INTERGENIC
SBS Chr1 18151829 C-T Hetero INTERGENIC
SBS Chr1 22126960 G-A Hetero INTERGENIC
SBS Chr1 31870780 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g321200
SBS Chr1 33305204 A-G Hetero UTR_5_PRIME
SBS Chr2 5330442 G-A Hetero INTRON
SBS Chr2 7754205 A-T Hetero INTERGENIC
SBS Chr2 10234937 T-A Hetero INTRON
SBS Chr2 14772641 A-T Hetero INTERGENIC
SBS Chr2 25155761 C-T Hetero INTERGENIC
SBS Chr3 934016 A-T Hetero INTERGENIC
SBS Chr4 7076042 C-A Homo INTERGENIC
SBS Chr4 27874383 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g206425
SBS Chr5 8821524 C-T Hetero INTERGENIC
SBS Chr5 10029914 C-T Hetero INTERGENIC
SBS Chr5 25428965 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g222000
SBS Chr6 7217305 A-G Hetero INTERGENIC
SBS Chr6 28219030 G-A Hetero INTERGENIC
SBS Chr6 29928883 A-C Hetero INTRON
SBS Chr7 2305869 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g032000
SBS Chr7 8146024 C-T Hetero INTERGENIC
SBS Chr7 9068573 A-T Hetero INTRON
SBS Chr8 3396804 A-G Homo INTERGENIC
SBS Chr8 4403034 T-C Homo INTERGENIC
SBS Chr8 28400226 C-G Hetero INTERGENIC
SBS Chr8 29134100 C-A Homo INTERGENIC
SBS Chr10 2882786 G-A Hetero INTERGENIC
SBS Chr11 14857763 C-T Hetero INTERGENIC
SBS Chr11 20264421 T-C Homo INTRON
SBS Chr11 26771368 T-G Hetero INTERGENIC
SBS Chr11 27996353 G-C Hetero INTERGENIC
SBS Chr12 5256717 T-C Hetero INTERGENIC
SBS Chr12 9177829 C-T Hetero INTERGENIC
SBS Chr12 14844858 A-G Hetero INTERGENIC
SBS Chr12 23537905 G-C Hetero INTRON
SBS Chr1 2083447 G-A Hetero INTRON
SBS Chr1 11319871 T-C Hetero INTERGENIC
SBS Chr1 18151829 C-T Hetero INTERGENIC
SBS Chr1 20489007 T-C Hetero INTERGENIC
SBS Chr1 22126960 G-A Hetero INTERGENIC
SBS Chr1 31870780 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g321200
SBS Chr1 33305204 A-G Hetero UTR_5_PRIME
SBS Chr1 38209364 C-T Hetero INTERGENIC
SBS Chr1 42629838 C-G Hetero INTERGENIC
SBS Chr2 5330442 G-A Hetero INTRON
SBS Chr2 7754205 A-T Hetero INTERGENIC
SBS Chr2 10234937 T-A Hetero INTRON
SBS Chr2 14772641 A-T Hetero INTERGENIC
SBS Chr2 25155761 C-T Hetero INTERGENIC
SBS Chr3 934016 A-T Hetero INTERGENIC
SBS Chr3 988944 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g014900
SBS Chr3 20747054 G-A Hetero INTERGENIC
SBS Chr4 7076042 C-A Homo INTERGENIC
SBS Chr4 10589624 C-T Hetero INTRON
SBS Chr4 12703858 C-T Hetero INTERGENIC
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 27616009 G-T Hetero INTERGENIC
SBS Chr4 27616010 C-T Hetero INTERGENIC
SBS Chr4 27874383 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g206425
SBS Chr4 31269370 T-C Hetero INTRON
SBS Chr4 32027349 G-A Hetero INTERGENIC
SBS Chr5 10029914 C-T Hetero INTERGENIC
SBS Chr5 25428965 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g222000
SBS Chr6 28219030 G-A Hetero INTERGENIC
SBS Chr7 8146024 C-T Hetero INTERGENIC
SBS Chr7 9068573 A-T Hetero INTRON
SBS Chr7 14793272 C-T Hetero INTERGENIC
SBS Chr8 3396804 A-G Homo INTERGENIC
SBS Chr8 4403034 T-C Homo INTERGENIC
SBS Chr8 12447441 T-C Homo INTERGENIC
SBS Chr8 28400226 C-G Hetero INTERGENIC
SBS Chr8 29134100 C-A Homo INTERGENIC
SBS Chr10 16544187 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 14857763 C-T Hetero INTERGENIC
SBS Chr11 20264421 T-C Homo INTRON
SBS Chr11 27996353 G-C Hetero INTERGENIC
SBS Chr12 5256717 T-C Hetero INTERGENIC
SBS Chr12 23537905 G-C Hetero INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1770282 1770285 3
Deletion Chr11 5272529 5272531 2 2
Deletion Chr8 6002673 6002675 2
Deletion Chr8 8255816 8255820 4
Deletion Chr10 8675813 8675979 166
Deletion Chr3 10696522 10696524 2
Deletion Chr8 12807026 12807027 1
Deletion Chr3 22138675 22138677 2 2
Deletion Chr3 23048616 23048620 4
Deletion Chr3 31867473 31867477 4

Insertions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44213717 44213723 5
Insertion Chr2 18402626 18402630 3
Insertion Chr5 29412245 29412248 2
Insertion Chr11 16647910 16647913 2
Insertion Chr1 25537567 25537572 4
Insertion Chr1 36723632 36723635 2
Insertion Chr2 18402626 18402629 2
Insertion Chr11 7408404 7408409 4
Insertion Chr11 26884024 26884027 2
Insertion Chr3 25940872 25940874 1
Insertion Chr4 33669529 33669532 2 OsKitaake04g279200
Insertion Chr7 8968727 8968729 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10016039	C-T	Hetero	INTERGENIC
SBS	Chr1	11319871	T-C	Hetero	INTERGENIC
SBS	Chr1	18151829	C-T	Hetero	INTERGENIC
SBS	Chr1	22126960	G-A	Hetero	INTERGENIC
SBS	Chr1	31870780	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g321200
SBS	Chr1	33305204	A-G	Hetero	UTR_5_PRIME
SBS	Chr2	5330442	G-A	Hetero	INTRON
SBS	Chr2	7754205	A-T	Hetero	INTERGENIC
SBS	Chr2	10234937	T-A	Hetero	INTRON
SBS	Chr2	14772641	A-T	Hetero	INTERGENIC
SBS	Chr2	25155761	C-T	Hetero	INTERGENIC
SBS	Chr3	934016	A-T	Hetero	INTERGENIC
SBS	Chr4	7076042	C-A	Homo	INTERGENIC
SBS	Chr4	27874383	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g206425
SBS	Chr5	8821524	C-T	Hetero	INTERGENIC
SBS	Chr5	10029914	C-T	Hetero	INTERGENIC
SBS	Chr5	25428965	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g222000
SBS	Chr6	7217305	A-G	Hetero	INTERGENIC
SBS	Chr6	28219030	G-A	Hetero	INTERGENIC
SBS	Chr6	29928883	A-C	Hetero	INTRON
SBS	Chr7	2305869	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g032000
SBS	Chr7	8146024	C-T	Hetero	INTERGENIC
SBS	Chr7	9068573	A-T	Hetero	INTRON
SBS	Chr8	3396804	A-G	Homo	INTERGENIC
SBS	Chr8	4403034	T-C	Homo	INTERGENIC
SBS	Chr8	28400226	C-G	Hetero	INTERGENIC
SBS	Chr8	29134100	C-A	Homo	INTERGENIC
SBS	Chr10	2882786	G-A	Hetero	INTERGENIC
SBS	Chr11	14857763	C-T	Hetero	INTERGENIC
SBS	Chr11	20264421	T-C	Homo	INTRON
SBS	Chr11	26771368	T-G	Hetero	INTERGENIC
SBS	Chr11	27996353	G-C	Hetero	INTERGENIC
SBS	Chr12	5256717	T-C	Hetero	INTERGENIC
SBS	Chr12	9177829	C-T	Hetero	INTERGENIC
SBS	Chr12	14844858	A-G	Hetero	INTERGENIC
SBS	Chr12	23537905	G-C	Hetero	INTRON
SBS	Chr1	2083447	G-A	Hetero	INTRON
SBS	Chr1	11319871	T-C	Hetero	INTERGENIC
SBS	Chr1	18151829	C-T	Hetero	INTERGENIC
SBS	Chr1	20489007	T-C	Hetero	INTERGENIC
SBS	Chr1	22126960	G-A	Hetero	INTERGENIC
SBS	Chr1	31870780	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g321200
SBS	Chr1	33305204	A-G	Hetero	UTR_5_PRIME
SBS	Chr1	38209364	C-T	Hetero	INTERGENIC
SBS	Chr1	42629838	C-G	Hetero	INTERGENIC
SBS	Chr2	5330442	G-A	Hetero	INTRON
SBS	Chr2	7754205	A-T	Hetero	INTERGENIC
SBS	Chr2	10234937	T-A	Hetero	INTRON
SBS	Chr2	14772641	A-T	Hetero	INTERGENIC
SBS	Chr2	25155761	C-T	Hetero	INTERGENIC
SBS	Chr3	934016	A-T	Hetero	INTERGENIC
SBS	Chr3	988944	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g014900
SBS	Chr3	20747054	G-A	Hetero	INTERGENIC
SBS	Chr4	7076042	C-A	Homo	INTERGENIC
SBS	Chr4	10589624	C-T	Hetero	INTRON
SBS	Chr4	12703858	C-T	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	27616009	G-T	Hetero	INTERGENIC
SBS	Chr4	27616010	C-T	Hetero	INTERGENIC
SBS	Chr4	27874383	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g206425
SBS	Chr4	31269370	T-C	Hetero	INTRON
SBS	Chr4	32027349	G-A	Hetero	INTERGENIC
SBS	Chr5	10029914	C-T	Hetero	INTERGENIC
SBS	Chr5	25428965	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g222000
SBS	Chr6	28219030	G-A	Hetero	INTERGENIC
SBS	Chr7	8146024	C-T	Hetero	INTERGENIC
SBS	Chr7	9068573	A-T	Hetero	INTRON
SBS	Chr7	14793272	C-T	Hetero	INTERGENIC
SBS	Chr8	3396804	A-G	Homo	INTERGENIC
SBS	Chr8	4403034	T-C	Homo	INTERGENIC
SBS	Chr8	12447441	T-C	Homo	INTERGENIC
SBS	Chr8	28400226	C-G	Hetero	INTERGENIC
SBS	Chr8	29134100	C-A	Homo	INTERGENIC
SBS	Chr10	16544187	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	14857763	C-T	Hetero	INTERGENIC
SBS	Chr11	20264421	T-C	Homo	INTRON
SBS	Chr11	27996353	G-C	Hetero	INTERGENIC
SBS	Chr12	5256717	T-C	Hetero	INTERGENIC
SBS	Chr12	23537905	G-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1770282	1770285	3
Deletion	Chr11	5272529	5272531	2	2
Deletion	Chr8	6002673	6002675	2
Deletion	Chr8	8255816	8255820	4
Deletion	Chr10	8675813	8675979	166
Deletion	Chr3	10696522	10696524	2
Deletion	Chr8	12807026	12807027	1
Deletion	Chr3	22138675	22138677	2	2
Deletion	Chr3	23048616	23048620	4
Deletion	Chr3	31867473	31867477	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes