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Mutant Information

Mutant Name	FN2683-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2683-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2091462 C-T Hetero INTRON
SBS Chr1 11542621 T-C Hetero INTERGENIC
SBS Chr1 13689998 G-T Hetero INTERGENIC
SBS Chr1 15534780 C-T Hetero INTERGENIC
SBS Chr1 34627530 C-T Hetero INTERGENIC
SBS Chr1 35108722 G-A Hetero INTERGENIC
SBS Chr1 36528335 C-A Hetero INTERGENIC
SBS Chr1 37596131 G-A Hetero INTERGENIC
SBS Chr2 14156496 T-C Hetero INTERGENIC
SBS Chr2 23662465 C-T Hetero INTERGENIC
SBS Chr2 24543482 C-A Hetero INTRON
SBS Chr4 5455418 C-T Hetero INTERGENIC
SBS Chr4 8920003 G-A Hetero INTERGENIC
SBS Chr4 15132302 A-G Hetero INTERGENIC
SBS Chr4 23022773 G-A Homo INTERGENIC
SBS Chr4 27481386 T-C Hetero INTERGENIC
SBS Chr4 27531523 G-A Hetero INTERGENIC
SBS Chr4 28077874 C-T Hetero INTERGENIC
SBS Chr5 23999 G-A Hetero INTERGENIC
SBS Chr5 9853180 A-T Homo INTERGENIC
SBS Chr5 21435002 G-A Hetero INTERGENIC
SBS Chr5 29906438 A-G Homo SYNONYMOUS_CODING
SBS Chr7 487166 A-T Hetero INTERGENIC
SBS Chr7 13598025 G-A Homo INTERGENIC
SBS Chr9 3403629 G-C Hetero UTR_3_PRIME
SBS Chr9 14894622 T-C Hetero INTERGENIC
SBS Chr9 21583734 C-T Hetero INTERGENIC
SBS Chr10 563116 C-A Homo INTERGENIC
SBS Chr10 8516666 C-T Hetero INTRON
SBS Chr10 19983821 C-T Hetero INTERGENIC
SBS Chr11 12555892 C-T Homo INTERGENIC
SBS Chr11 29061765 A-G Homo NON_SYNONYMOUS_CODING OsKitaake11g238100
SBS Chr12 20041552 A-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3428399 3428411 12
Deletion Chr10 6769947 6769954 7
Deletion Chr12 9022001 9029000 6999 OsKitaake12g089700
Deletion Chr9 12119997 12120005 8
Deletion Chr4 12167580 12167581 1
Deletion Chr1 14209962 14209963 1
Deletion Chr6 18297533 18297566 33
Deletion Chr9 20545828 20545829 1
Deletion Chr3 24356808 24356818 10
Deletion Chr8 25731078 25731079 1
Deletion Chr6 25829478 25829480 2
Deletion Chr2 27447123 27447128 5
Deletion Chr11 29004272 29004273 1
Deletion Chr3 32689326 32689334 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20837435 20837438 2
Insertion Chr5 22004894 22004900 5
Insertion Chr6 16647037 16647040 2
Insertion Chr7 10268465 10268468 2
Insertion Chr12 3436186 3436189 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 8517205 9021491 OsKitaake12g089700
Inversion Chr12 10752035 11357804 OsKitaake12g102301

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8521722 Chr3 15441339
Translocation Chr12 8526994 Chr3 15441375

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2091462	C-T	Hetero	INTRON
SBS	Chr1	11542621	T-C	Hetero	INTERGENIC
SBS	Chr1	13689998	G-T	Hetero	INTERGENIC
SBS	Chr1	15534780	C-T	Hetero	INTERGENIC
SBS	Chr1	34627530	C-T	Hetero	INTERGENIC
SBS	Chr1	35108722	G-A	Hetero	INTERGENIC
SBS	Chr1	36528335	C-A	Hetero	INTERGENIC
SBS	Chr1	37596131	G-A	Hetero	INTERGENIC
SBS	Chr2	14156496	T-C	Hetero	INTERGENIC
SBS	Chr2	23662465	C-T	Hetero	INTERGENIC
SBS	Chr2	24543482	C-A	Hetero	INTRON
SBS	Chr4	5455418	C-T	Hetero	INTERGENIC
SBS	Chr4	8920003	G-A	Hetero	INTERGENIC
SBS	Chr4	15132302	A-G	Hetero	INTERGENIC
SBS	Chr4	23022773	G-A	Homo	INTERGENIC
SBS	Chr4	27481386	T-C	Hetero	INTERGENIC
SBS	Chr4	27531523	G-A	Hetero	INTERGENIC
SBS	Chr4	28077874	C-T	Hetero	INTERGENIC
SBS	Chr5	23999	G-A	Hetero	INTERGENIC
SBS	Chr5	9853180	A-T	Homo	INTERGENIC
SBS	Chr5	21435002	G-A	Hetero	INTERGENIC
SBS	Chr5	29906438	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	487166	A-T	Hetero	INTERGENIC
SBS	Chr7	13598025	G-A	Homo	INTERGENIC
SBS	Chr9	3403629	G-C	Hetero	UTR_3_PRIME
SBS	Chr9	14894622	T-C	Hetero	INTERGENIC
SBS	Chr9	21583734	C-T	Hetero	INTERGENIC
SBS	Chr10	563116	C-A	Homo	INTERGENIC
SBS	Chr10	8516666	C-T	Hetero	INTRON
SBS	Chr10	19983821	C-T	Hetero	INTERGENIC
SBS	Chr11	12555892	C-T	Homo	INTERGENIC
SBS	Chr11	29061765	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g238100
SBS	Chr12	20041552	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3428399	3428411	12
Deletion	Chr10	6769947	6769954	7
Deletion	Chr12	9022001	9029000	6999	OsKitaake12g089700
Deletion	Chr9	12119997	12120005	8
Deletion	Chr4	12167580	12167581	1
Deletion	Chr1	14209962	14209963	1
Deletion	Chr6	18297533	18297566	33
Deletion	Chr9	20545828	20545829	1
Deletion	Chr3	24356808	24356818	10
Deletion	Chr8	25731078	25731079	1
Deletion	Chr6	25829478	25829480	2
Deletion	Chr2	27447123	27447128	5
Deletion	Chr11	29004272	29004273	1
Deletion	Chr3	32689326	32689334	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	8517205	9021491	OsKitaake12g089700
Inversion	Chr12	10752035	11357804	OsKitaake12g102301

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes