Search Kitaake

Mutant Information

Mutant Name	FN2684-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2684-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4260383 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g056900
SBS Chr1 19388917 C-T Homo INTERGENIC
SBS Chr1 23732233 T-A Hetero INTERGENIC
SBS Chr1 26077833 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g253900
SBS Chr1 31681259 A-C Hetero INTERGENIC
SBS Chr2 33910763 T-A Homo INTERGENIC
SBS Chr2 36180176 G-T Hetero INTERGENIC
SBS Chr3 1795558 C-T Homo INTERGENIC
SBS Chr3 12073101 C-T Hetero INTERGENIC
SBS Chr3 27839886 G-A Hetero INTERGENIC
SBS Chr3 28158739 T-A Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr4 14365285 G-A Hetero INTERGENIC
SBS Chr4 22126142 G-A Hetero INTERGENIC
SBS Chr4 27608714 T-C Homo INTERGENIC
SBS Chr4 34434678 C-T Hetero INTERGENIC
SBS Chr5 323078 G-T Hetero INTERGENIC
SBS Chr5 6408902 G-A Hetero INTERGENIC
SBS Chr5 13809769 C-T Hetero INTERGENIC
SBS Chr5 15473129 A-T Hetero INTERGENIC
SBS Chr5 22983186 T-C Hetero INTRON
SBS Chr5 26972004 C-T Hetero INTRON
SBS Chr6 5706534 G-A Hetero INTERGENIC
SBS Chr6 6822868 G-T Hetero INTERGENIC
SBS Chr6 16013245 C-T Homo INTERGENIC
SBS Chr6 17697054 C-T Hetero INTERGENIC
SBS Chr6 18154697 C-A Hetero INTERGENIC
SBS Chr6 26378763 G-A Homo INTERGENIC
SBS Chr6 26475558 T-A Homo INTERGENIC
SBS Chr7 5173219 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 5322394 G-A Hetero INTERGENIC
SBS Chr7 14841078 C-T Hetero INTRON
SBS Chr7 16373961 C-T Hetero INTERGENIC
SBS Chr7 17582016 T-C Hetero INTRON
SBS Chr7 17996501 C-T Hetero INTERGENIC
SBS Chr7 18333064 T-C Hetero INTERGENIC
SBS Chr7 23870547 C-T Hetero INTERGENIC
SBS Chr8 5827638 C-T Hetero INTERGENIC
SBS Chr8 8026420 C-T Hetero INTERGENIC
SBS Chr8 11027161 G-T Hetero INTRON
SBS Chr8 12919466 T-A Hetero INTERGENIC
SBS Chr8 18359078 G-A Hetero INTERGENIC
SBS Chr9 2422756 T-A Hetero INTERGENIC
SBS Chr9 7135879 C-T Hetero INTERGENIC
SBS Chr9 9568089 T-A Hetero INTERGENIC
SBS Chr9 10789436 A-G Hetero INTRON
SBS Chr9 12487225 C-A Hetero INTRON
SBS Chr9 16960913 T-G Hetero INTRON
SBS Chr9 19519181 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g159300
SBS Chr9 22101456 C-A Homo NON_SYNONYMOUS_CODING OsKitaake09g198700
SBS Chr10 5670225 T-G Hetero INTERGENIC
SBS Chr10 10319367 C-T Hetero INTERGENIC
SBS Chr10 10319368 C-T Hetero INTERGENIC
SBS Chr10 11849367 G-T Hetero INTERGENIC
SBS Chr11 3901329 C-T Hetero INTERGENIC
SBS Chr11 6568410 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g078000
SBS Chr11 13030814 A-G Hetero INTERGENIC
SBS Chr11 18806804 C-G Hetero INTERGENIC
SBS Chr11 24746539 A-G Hetero INTERGENIC
SBS Chr12 7919082 T-A Hetero INTERGENIC
SBS Chr12 7996950 G-A Hetero INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC
SBS Chr12 13454050 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2251007 2251017 10
Deletion Chr12 6234001 6334000 99999 9
Deletion Chr7 9126397 9126402 5
Deletion Chr11 15130717 15130721 4
Deletion Chr9 16140964 16140966 2
Deletion Chr10 17254297 17254299 2
Deletion Chr7 18197001 18220000 22999 5
Deletion Chr7 18219680 18219691 11
Deletion Chr2 19222492 19222494 2
Deletion Chr4 21316397 21316409 12
Deletion Chr8 22855874 22855881 7
Deletion Chr8 23716744 23716750 6
Deletion Chr12 24610157 24610159 2
Deletion Chr3 30706662 30706664 2
Deletion Chr1 39330849 39330855 6

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26680992 26680996 3
Insertion Chr1 26684138 26684141 2
Insertion Chr3 20497229 20497232 2
Insertion Chr3 22268486 22268489 2
Insertion Chr11 10470874 10470876 1
Insertion Chr11 16685545 16685549 3
Insertion Chr11 16709257 16709260 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3648049 3658013 OsKitaake08g040600
Inversion Chr8 3658024 3721056

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4260383	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g056900
SBS	Chr1	19388917	C-T	Homo	INTERGENIC
SBS	Chr1	23732233	T-A	Hetero	INTERGENIC
SBS	Chr1	26077833	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g253900
SBS	Chr1	31681259	A-C	Hetero	INTERGENIC
SBS	Chr2	33910763	T-A	Homo	INTERGENIC
SBS	Chr2	36180176	G-T	Hetero	INTERGENIC
SBS	Chr3	1795558	C-T	Homo	INTERGENIC
SBS	Chr3	12073101	C-T	Hetero	INTERGENIC
SBS	Chr3	27839886	G-A	Hetero	INTERGENIC
SBS	Chr3	28158739	T-A	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr4	14365285	G-A	Hetero	INTERGENIC
SBS	Chr4	22126142	G-A	Hetero	INTERGENIC
SBS	Chr4	27608714	T-C	Homo	INTERGENIC
SBS	Chr4	34434678	C-T	Hetero	INTERGENIC
SBS	Chr5	323078	G-T	Hetero	INTERGENIC
SBS	Chr5	6408902	G-A	Hetero	INTERGENIC
SBS	Chr5	13809769	C-T	Hetero	INTERGENIC
SBS	Chr5	15473129	A-T	Hetero	INTERGENIC
SBS	Chr5	22983186	T-C	Hetero	INTRON
SBS	Chr5	26972004	C-T	Hetero	INTRON
SBS	Chr6	5706534	G-A	Hetero	INTERGENIC
SBS	Chr6	6822868	G-T	Hetero	INTERGENIC
SBS	Chr6	16013245	C-T	Homo	INTERGENIC
SBS	Chr6	17697054	C-T	Hetero	INTERGENIC
SBS	Chr6	18154697	C-A	Hetero	INTERGENIC
SBS	Chr6	26378763	G-A	Homo	INTERGENIC
SBS	Chr6	26475558	T-A	Homo	INTERGENIC
SBS	Chr7	5173219	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	5322394	G-A	Hetero	INTERGENIC
SBS	Chr7	14841078	C-T	Hetero	INTRON
SBS	Chr7	16373961	C-T	Hetero	INTERGENIC
SBS	Chr7	17582016	T-C	Hetero	INTRON
SBS	Chr7	17996501	C-T	Hetero	INTERGENIC
SBS	Chr7	18333064	T-C	Hetero	INTERGENIC
SBS	Chr7	23870547	C-T	Hetero	INTERGENIC
SBS	Chr8	5827638	C-T	Hetero	INTERGENIC
SBS	Chr8	8026420	C-T	Hetero	INTERGENIC
SBS	Chr8	11027161	G-T	Hetero	INTRON
SBS	Chr8	12919466	T-A	Hetero	INTERGENIC
SBS	Chr8	18359078	G-A	Hetero	INTERGENIC
SBS	Chr9	2422756	T-A	Hetero	INTERGENIC
SBS	Chr9	7135879	C-T	Hetero	INTERGENIC
SBS	Chr9	9568089	T-A	Hetero	INTERGENIC
SBS	Chr9	10789436	A-G	Hetero	INTRON
SBS	Chr9	12487225	C-A	Hetero	INTRON
SBS	Chr9	16960913	T-G	Hetero	INTRON
SBS	Chr9	19519181	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g159300
SBS	Chr9	22101456	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g198700
SBS	Chr10	5670225	T-G	Hetero	INTERGENIC
SBS	Chr10	10319367	C-T	Hetero	INTERGENIC
SBS	Chr10	10319368	C-T	Hetero	INTERGENIC
SBS	Chr10	11849367	G-T	Hetero	INTERGENIC
SBS	Chr11	3901329	C-T	Hetero	INTERGENIC
SBS	Chr11	6568410	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g078000
SBS	Chr11	13030814	A-G	Hetero	INTERGENIC
SBS	Chr11	18806804	C-G	Hetero	INTERGENIC
SBS	Chr11	24746539	A-G	Hetero	INTERGENIC
SBS	Chr12	7919082	T-A	Hetero	INTERGENIC
SBS	Chr12	7996950	G-A	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC
SBS	Chr12	13454050	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2251007	2251017	10
Deletion	Chr12	6234001	6334000	99999	9
Deletion	Chr7	9126397	9126402	5
Deletion	Chr11	15130717	15130721	4
Deletion	Chr9	16140964	16140966	2
Deletion	Chr10	17254297	17254299	2
Deletion	Chr7	18197001	18220000	22999	5
Deletion	Chr7	18219680	18219691	11
Deletion	Chr2	19222492	19222494	2
Deletion	Chr4	21316397	21316409	12
Deletion	Chr8	22855874	22855881	7
Deletion	Chr8	23716744	23716750	6
Deletion	Chr12	24610157	24610159	2
Deletion	Chr3	30706662	30706664	2
Deletion	Chr1	39330849	39330855	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3648049	3658013	OsKitaake08g040600
Inversion	Chr8	3658024	3721056

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes