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Mutant Information

Mutant Name	FN2685-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2685-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11676385 C-A Homo INTERGENIC
SBS Chr1 11676387 G-A Homo INTERGENIC
SBS Chr1 18423290 A-G Hetero INTERGENIC
SBS Chr1 24325016 T-C Hetero INTERGENIC
SBS Chr1 28281489 C-T Homo INTERGENIC
SBS Chr2 5069861 C-T Hetero INTERGENIC
SBS Chr2 20608125 C-T Hetero INTERGENIC
SBS Chr2 21737734 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g211200
SBS Chr2 24567326 C-T Hetero INTERGENIC
SBS Chr2 24567327 G-T Hetero INTERGENIC
SBS Chr2 33890744 T-C Hetero INTRON
SBS Chr3 6802706 G-A Homo UTR_3_PRIME
SBS Chr3 12122890 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 34429636 C-A Homo INTERGENIC
SBS Chr4 3463245 A-T Homo INTERGENIC
SBS Chr4 21861423 C-T Hetero INTERGENIC
SBS Chr5 9296427 C-T Hetero INTERGENIC
SBS Chr5 24158232 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g214400
SBS Chr5 28155542 A-G Hetero INTERGENIC
SBS Chr7 7934222 C-G Hetero INTERGENIC
SBS Chr7 14759046 C-T Hetero INTERGENIC
SBS Chr8 3403062 C-A Hetero SYNONYMOUS_CODING
SBS Chr8 10031394 A-T Homo INTERGENIC
SBS Chr8 22800969 A-T Homo INTERGENIC
SBS Chr9 11671170 A-T Homo INTERGENIC
SBS Chr9 14863981 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g102300
SBS Chr9 15622190 A-G Hetero INTERGENIC
SBS Chr10 7618076 G-A Hetero INTERGENIC
SBS Chr10 19701954 G-A Hetero INTERGENIC
SBS Chr11 10921842 T-C Homo INTERGENIC
SBS Chr11 22699450 C-T Hetero INTERGENIC
SBS Chr12 4490286 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 8070994 G-A Hetero INTERGENIC
SBS Chr12 8900960 G-C Hetero INTERGENIC
SBS Chr12 13838731 C-T Hetero INTERGENIC
SBS Chr12 16974248 A-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 5410767 5410786 19
Deletion Chr11 9035693 9035698 5
Deletion Chr3 9132854 9132859 5
Deletion Chr11 12138893 12138895 2
Deletion Chr1 15433896 15433905 9
Deletion Chr4 16678942 16678948 6
Deletion Chr9 18699001 18712000 12999 2
Deletion Chr11 19203538 19203539 1
Deletion Chr2 20143972 20143980 8
Deletion Chr2 25117738 25117745 7
Deletion Chr11 25643128 25643132 4
Deletion Chr3 25941480 25941481 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28404876 28404879 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 21212095 21717961
Inversion Chr2 21212103 21717969

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6904109 Chr4 4847118 OsKitaake06g089500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11676385	C-A	Homo	INTERGENIC
SBS	Chr1	11676387	G-A	Homo	INTERGENIC
SBS	Chr1	18423290	A-G	Hetero	INTERGENIC
SBS	Chr1	24325016	T-C	Hetero	INTERGENIC
SBS	Chr1	28281489	C-T	Homo	INTERGENIC
SBS	Chr2	5069861	C-T	Hetero	INTERGENIC
SBS	Chr2	20608125	C-T	Hetero	INTERGENIC
SBS	Chr2	21737734	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g211200
SBS	Chr2	24567326	C-T	Hetero	INTERGENIC
SBS	Chr2	24567327	G-T	Hetero	INTERGENIC
SBS	Chr2	33890744	T-C	Hetero	INTRON
SBS	Chr3	6802706	G-A	Homo	UTR_3_PRIME
SBS	Chr3	12122890	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	34429636	C-A	Homo	INTERGENIC
SBS	Chr4	3463245	A-T	Homo	INTERGENIC
SBS	Chr4	21861423	C-T	Hetero	INTERGENIC
SBS	Chr5	9296427	C-T	Hetero	INTERGENIC
SBS	Chr5	24158232	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g214400
SBS	Chr5	28155542	A-G	Hetero	INTERGENIC
SBS	Chr7	7934222	C-G	Hetero	INTERGENIC
SBS	Chr7	14759046	C-T	Hetero	INTERGENIC
SBS	Chr8	3403062	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	10031394	A-T	Homo	INTERGENIC
SBS	Chr8	22800969	A-T	Homo	INTERGENIC
SBS	Chr9	11671170	A-T	Homo	INTERGENIC
SBS	Chr9	14863981	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g102300
SBS	Chr9	15622190	A-G	Hetero	INTERGENIC
SBS	Chr10	7618076	G-A	Hetero	INTERGENIC
SBS	Chr10	19701954	G-A	Hetero	INTERGENIC
SBS	Chr11	10921842	T-C	Homo	INTERGENIC
SBS	Chr11	22699450	C-T	Hetero	INTERGENIC
SBS	Chr12	4490286	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	8070994	G-A	Hetero	INTERGENIC
SBS	Chr12	8900960	G-C	Hetero	INTERGENIC
SBS	Chr12	13838731	C-T	Hetero	INTERGENIC
SBS	Chr12	16974248	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	5410767	5410786	19
Deletion	Chr11	9035693	9035698	5
Deletion	Chr3	9132854	9132859	5
Deletion	Chr11	12138893	12138895	2
Deletion	Chr1	15433896	15433905	9
Deletion	Chr4	16678942	16678948	6
Deletion	Chr9	18699001	18712000	12999	2
Deletion	Chr11	19203538	19203539	1
Deletion	Chr2	20143972	20143980	8
Deletion	Chr2	25117738	25117745	7
Deletion	Chr11	25643128	25643132	4
Deletion	Chr3	25941480	25941481	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	21212095	21717961
Inversion	Chr2	21212103	21717969

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes