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Mutant Information

Mutant Name	FN2686-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2686-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6106091 T-A Homo INTERGENIC
SBS Chr2 7668716 G-T Hetero INTERGENIC
SBS Chr2 7668717 A-T Hetero INTERGENIC
SBS Chr2 16835115 C-T Hetero INTERGENIC
SBS Chr2 17933103 C-T Hetero INTERGENIC
SBS Chr2 18196366 G-A Hetero INTERGENIC
SBS Chr2 24779702 T-C Hetero INTERGENIC
SBS Chr2 28806519 G-A Homo INTERGENIC
SBS Chr3 8335670 C-T Hetero INTERGENIC
SBS Chr3 24051310 C-G Hetero SYNONYMOUS_CODING
SBS Chr3 24991385 C-A Hetero INTERGENIC
SBS Chr3 27134778 A-G Hetero INTERGENIC
SBS Chr3 30085670 A-G Hetero INTERGENIC
SBS Chr3 31169113 C-T Hetero INTERGENIC
SBS Chr3 36227273 G-C Homo INTERGENIC
SBS Chr4 5247682 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 7865601 A-T Hetero INTERGENIC
SBS Chr4 13739576 C-G Hetero INTERGENIC
SBS Chr4 17946628 G-A Hetero INTERGENIC
SBS Chr4 35365585 C-T Hetero INTERGENIC
SBS Chr5 14347880 T-C Hetero INTRON
SBS Chr6 1196549 G-T Hetero INTERGENIC
SBS Chr6 1531655 T-C Hetero INTRON
SBS Chr6 12808031 T-C Hetero SYNONYMOUS_CODING
SBS Chr6 16784372 A-T Hetero INTRON
SBS Chr6 20748644 G-A Homo INTERGENIC
SBS Chr6 23591229 G-A Homo UTR_3_PRIME
SBS Chr7 21708814 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g181800
SBS Chr8 10092076 T-C Homo INTERGENIC
SBS Chr8 12106643 A-G Hetero INTERGENIC
SBS Chr8 22085202 A-G Hetero INTERGENIC
SBS Chr9 10152393 C-A Hetero INTERGENIC
SBS Chr9 11846133 T-C Homo INTERGENIC
SBS Chr11 8859029 C-A Hetero INTERGENIC
SBS Chr12 1617076 G-T Hetero INTRON
SBS Chr12 12081940 G-A Hetero INTERGENIC
SBS Chr12 15982600 G-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 568444 568445 1
Deletion Chr6 2761530 2761532 2
Deletion Chr3 6089001 6103000 13999 2
Deletion Chr7 9029530 9029536 6
Deletion Chr1 15271084 15271086 2
Deletion Chr12 15427376 15427378 2
Deletion Chr12 26723647 26723648 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 20829521 20829524 2
Insertion Chr7 17400373 17400376 2
Insertion Chr12 24386963 24386966 2
Insertion Chr11 11247494 11247519 24

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11945785 12272645 2
Inversion Chr3 11945797 12272651 2
Inversion Chr11 27784055 28732622 2
Inversion Chr11 27784057 28732619 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8667986 Chr1 17284457

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6106091	T-A	Homo	INTERGENIC
SBS	Chr2	7668716	G-T	Hetero	INTERGENIC
SBS	Chr2	7668717	A-T	Hetero	INTERGENIC
SBS	Chr2	16835115	C-T	Hetero	INTERGENIC
SBS	Chr2	17933103	C-T	Hetero	INTERGENIC
SBS	Chr2	18196366	G-A	Hetero	INTERGENIC
SBS	Chr2	24779702	T-C	Hetero	INTERGENIC
SBS	Chr2	28806519	G-A	Homo	INTERGENIC
SBS	Chr3	8335670	C-T	Hetero	INTERGENIC
SBS	Chr3	24051310	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24991385	C-A	Hetero	INTERGENIC
SBS	Chr3	27134778	A-G	Hetero	INTERGENIC
SBS	Chr3	30085670	A-G	Hetero	INTERGENIC
SBS	Chr3	31169113	C-T	Hetero	INTERGENIC
SBS	Chr3	36227273	G-C	Homo	INTERGENIC
SBS	Chr4	5247682	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	7865601	A-T	Hetero	INTERGENIC
SBS	Chr4	13739576	C-G	Hetero	INTERGENIC
SBS	Chr4	17946628	G-A	Hetero	INTERGENIC
SBS	Chr4	35365585	C-T	Hetero	INTERGENIC
SBS	Chr5	14347880	T-C	Hetero	INTRON
SBS	Chr6	1196549	G-T	Hetero	INTERGENIC
SBS	Chr6	1531655	T-C	Hetero	INTRON
SBS	Chr6	12808031	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	16784372	A-T	Hetero	INTRON
SBS	Chr6	20748644	G-A	Homo	INTERGENIC
SBS	Chr6	23591229	G-A	Homo	UTR_3_PRIME
SBS	Chr7	21708814	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g181800
SBS	Chr8	10092076	T-C	Homo	INTERGENIC
SBS	Chr8	12106643	A-G	Hetero	INTERGENIC
SBS	Chr8	22085202	A-G	Hetero	INTERGENIC
SBS	Chr9	10152393	C-A	Hetero	INTERGENIC
SBS	Chr9	11846133	T-C	Homo	INTERGENIC
SBS	Chr11	8859029	C-A	Hetero	INTERGENIC
SBS	Chr12	1617076	G-T	Hetero	INTRON
SBS	Chr12	12081940	G-A	Hetero	INTERGENIC
SBS	Chr12	15982600	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	568444	568445	1
Deletion	Chr6	2761530	2761532	2
Deletion	Chr3	6089001	6103000	13999	2
Deletion	Chr7	9029530	9029536	6
Deletion	Chr1	15271084	15271086	2
Deletion	Chr12	15427376	15427378	2
Deletion	Chr12	26723647	26723648	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11945785	12272645	2
Inversion	Chr3	11945797	12272651	2
Inversion	Chr11	27784055	28732622	2
Inversion	Chr11	27784057	28732619	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes