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Mutant Information

Mutant Name	FN2687-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2687-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 92

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 772215 A-G Hetero INTERGENIC
SBS Chr1 6201178 C-T Homo INTERGENIC
SBS Chr2 18366996 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g182000
SBS Chr2 31069606 T-C Hetero INTERGENIC
SBS Chr2 31938718 C-T Hetero INTERGENIC
SBS Chr3 6646327 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 12292921 C-T Homo INTERGENIC
SBS Chr4 4692805 G-A Hetero INTERGENIC
SBS Chr4 6497300 C-T Hetero INTERGENIC
SBS Chr4 13314808 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g063300
SBS Chr4 14854235 T-C Hetero INTERGENIC
SBS Chr4 17346742 C-T Hetero INTERGENIC
SBS Chr4 18829608 A-T Hetero INTRON
SBS Chr4 21053487 A-G Hetero INTERGENIC
SBS Chr4 21053496 G-A Hetero INTERGENIC
SBS Chr4 29208472 G-T Hetero INTRON
SBS Chr5 4004721 T-A Hetero INTERGENIC
SBS Chr5 14346024 G-T Hetero INTRON
SBS Chr5 15034203 T-C Hetero INTERGENIC
SBS Chr5 20822599 G-A Hetero INTERGENIC
SBS Chr5 28176314 T-G Homo SPLICE_SITE_REGION
SBS Chr6 4176453 A-T Hetero INTERGENIC
SBS Chr6 8617258 G-A Hetero INTERGENIC
SBS Chr6 22039368 C-T Hetero INTERGENIC
SBS Chr7 5956879 A-G Hetero INTRON
SBS Chr7 11222873 C-T Hetero INTERGENIC
SBS Chr7 17975022 C-A Hetero INTERGENIC
SBS Chr7 17975023 A-C Hetero INTERGENIC
SBS Chr7 18843858 G-C Hetero INTERGENIC
SBS Chr7 19034342 C-T Hetero INTERGENIC
SBS Chr7 24175603 C-T Hetero INTERGENIC
SBS Chr7 25022179 A-T Hetero INTERGENIC
SBS Chr7 27886298 C-A Hetero INTERGENIC
SBS Chr8 1362631 A-T Hetero INTERGENIC
SBS Chr8 27048157 G-C Homo INTERGENIC
SBS Chr9 7145203 T-G Hetero INTERGENIC
SBS Chr9 8225765 C-T Hetero INTERGENIC
SBS Chr9 13512981 G-A Homo UTR_3_PRIME
SBS Chr9 16526709 G-T Homo SYNONYMOUS_CODING
SBS Chr9 16761173 G-A Hetero INTERGENIC
SBS Chr9 18863505 G-T Hetero INTERGENIC
SBS Chr10 8906158 G-T Hetero INTERGENIC
SBS Chr10 10068269 C-A Hetero INTERGENIC
SBS Chr11 6603631 A-T Homo INTRON
SBS Chr11 7646890 T-C Hetero INTERGENIC
SBS Chr11 16778776 C-T Hetero INTERGENIC
SBS Chr11 16778777 G-T Hetero INTERGENIC
SBS Chr11 26031120 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 29688818 G-T Hetero INTERGENIC
SBS Chr12 9469686 G-A Hetero INTERGENIC
SBS Chr12 12692202 A-T Hetero INTERGENIC
SBS Chr12 23106986 C-A Hetero INTERGENIC
SBS Chr12 23998934 G-A Homo INTERGENIC
SBS Chr1 6201178 C-T Homo INTERGENIC
SBS Chr1 7094242 C-T Hetero INTRON
SBS Chr1 19064652 C-T Hetero INTERGENIC
SBS Chr1 34482867 G-A Hetero INTERGENIC
SBS Chr1 35766421 A-T Hetero INTRON
SBS Chr2 31069606 T-C Hetero INTERGENIC
SBS Chr3 6646327 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 12292921 C-T Homo INTERGENIC
SBS Chr4 4692805 G-A Hetero INTERGENIC
SBS Chr4 13314808 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g063300
SBS Chr4 17346742 C-T Hetero INTERGENIC
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr4 29208472 G-T Hetero INTRON
SBS Chr5 4004721 T-A Hetero INTERGENIC
SBS Chr5 21158365 G-T Hetero INTERGENIC
SBS Chr5 28176314 T-G Homo SPLICE_SITE_REGION
SBS Chr6 4176453 A-T Hetero INTERGENIC
SBS Chr6 4992500 G-T Hetero INTERGENIC
SBS Chr6 6048376 C-T Hetero INTERGENIC
SBS Chr6 22039368 C-T Hetero INTERGENIC
SBS Chr7 5956879 A-G Hetero INTRON
SBS Chr7 17975022 C-A Hetero INTERGENIC
SBS Chr7 17975023 A-C Hetero INTERGENIC
SBS Chr7 18843858 G-C Hetero INTERGENIC
SBS Chr7 27886298 C-A Hetero INTERGENIC
SBS Chr8 7493837 G-A Hetero INTERGENIC
SBS Chr8 14184259 C-T Hetero INTERGENIC
SBS Chr8 27048157 G-C Homo INTERGENIC
SBS Chr9 7145203 T-G Hetero INTERGENIC
SBS Chr9 11403704 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g070700
SBS Chr9 13512981 G-A Homo UTR_3_PRIME
SBS Chr9 16526709 G-T Homo SYNONYMOUS_CODING
SBS Chr11 6603631 A-T Homo INTRON
SBS Chr11 16778776 C-T Hetero INTERGENIC
SBS Chr11 16778777 G-T Hetero INTERGENIC
SBS Chr11 29688818 G-T Hetero INTERGENIC
SBS Chr12 9469686 G-A Hetero INTERGENIC
SBS Chr12 12692202 A-T Hetero INTERGENIC
SBS Chr12 23998934 G-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156979 156981 2
Deletion Chr3 624737 624739 2
Deletion Chr3 1060174 1060186 12 2
Deletion Chr2 2439313 2439320 7
Deletion Chr3 2739000 2739021 21
Deletion Chr9 12334443 12334444 1 2
Deletion Chr9 13136572 13136573 1 2
Deletion Chr9 16026420 16026422 2
Deletion Chr10 16626776 16626782 6 2
Deletion Chr8 20558297 20558298 1
Deletion Chr4 21053489 21053490 1
Deletion Chr3 21898985 21898992 7 2
Deletion Chr5 23063010 23063014 4 2
Deletion Chr5 26849566 26849567 1 2
Deletion Chr5 26955281 26955282 1 2
Deletion Chr3 35165037 35165044 7
Deletion Chr1 39724948 39724957 9 OsKitaake01g429400

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17284130 17284133 2
Insertion Chr6 20041699 20041703 3
Insertion Chr7 5316716 5316719 2
Insertion Chr8 27590919 27590922 2
Insertion Chr2 4606944 4606948 3
Insertion Chr3 15986072 15986075 2
Insertion Chr8 14929054 14929062 7
Insertion Chr11 25150434 25150437 2
Insertion Chr12 17238951 17238954 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 214354 598770 OsKitaake03g003100
Inversion Chr3 214356 598772 OsKitaake03g003100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	772215	A-G	Hetero	INTERGENIC
SBS	Chr1	6201178	C-T	Homo	INTERGENIC
SBS	Chr2	18366996	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g182000
SBS	Chr2	31069606	T-C	Hetero	INTERGENIC
SBS	Chr2	31938718	C-T	Hetero	INTERGENIC
SBS	Chr3	6646327	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	12292921	C-T	Homo	INTERGENIC
SBS	Chr4	4692805	G-A	Hetero	INTERGENIC
SBS	Chr4	6497300	C-T	Hetero	INTERGENIC
SBS	Chr4	13314808	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g063300
SBS	Chr4	14854235	T-C	Hetero	INTERGENIC
SBS	Chr4	17346742	C-T	Hetero	INTERGENIC
SBS	Chr4	18829608	A-T	Hetero	INTRON
SBS	Chr4	21053487	A-G	Hetero	INTERGENIC
SBS	Chr4	21053496	G-A	Hetero	INTERGENIC
SBS	Chr4	29208472	G-T	Hetero	INTRON
SBS	Chr5	4004721	T-A	Hetero	INTERGENIC
SBS	Chr5	14346024	G-T	Hetero	INTRON
SBS	Chr5	15034203	T-C	Hetero	INTERGENIC
SBS	Chr5	20822599	G-A	Hetero	INTERGENIC
SBS	Chr5	28176314	T-G	Homo	SPLICE_SITE_REGION
SBS	Chr6	4176453	A-T	Hetero	INTERGENIC
SBS	Chr6	8617258	G-A	Hetero	INTERGENIC
SBS	Chr6	22039368	C-T	Hetero	INTERGENIC
SBS	Chr7	5956879	A-G	Hetero	INTRON
SBS	Chr7	11222873	C-T	Hetero	INTERGENIC
SBS	Chr7	17975022	C-A	Hetero	INTERGENIC
SBS	Chr7	17975023	A-C	Hetero	INTERGENIC
SBS	Chr7	18843858	G-C	Hetero	INTERGENIC
SBS	Chr7	19034342	C-T	Hetero	INTERGENIC
SBS	Chr7	24175603	C-T	Hetero	INTERGENIC
SBS	Chr7	25022179	A-T	Hetero	INTERGENIC
SBS	Chr7	27886298	C-A	Hetero	INTERGENIC
SBS	Chr8	1362631	A-T	Hetero	INTERGENIC
SBS	Chr8	27048157	G-C	Homo	INTERGENIC
SBS	Chr9	7145203	T-G	Hetero	INTERGENIC
SBS	Chr9	8225765	C-T	Hetero	INTERGENIC
SBS	Chr9	13512981	G-A	Homo	UTR_3_PRIME
SBS	Chr9	16526709	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	16761173	G-A	Hetero	INTERGENIC
SBS	Chr9	18863505	G-T	Hetero	INTERGENIC
SBS	Chr10	8906158	G-T	Hetero	INTERGENIC
SBS	Chr10	10068269	C-A	Hetero	INTERGENIC
SBS	Chr11	6603631	A-T	Homo	INTRON
SBS	Chr11	7646890	T-C	Hetero	INTERGENIC
SBS	Chr11	16778776	C-T	Hetero	INTERGENIC
SBS	Chr11	16778777	G-T	Hetero	INTERGENIC
SBS	Chr11	26031120	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	29688818	G-T	Hetero	INTERGENIC
SBS	Chr12	9469686	G-A	Hetero	INTERGENIC
SBS	Chr12	12692202	A-T	Hetero	INTERGENIC
SBS	Chr12	23106986	C-A	Hetero	INTERGENIC
SBS	Chr12	23998934	G-A	Homo	INTERGENIC
SBS	Chr1	6201178	C-T	Homo	INTERGENIC
SBS	Chr1	7094242	C-T	Hetero	INTRON
SBS	Chr1	19064652	C-T	Hetero	INTERGENIC
SBS	Chr1	34482867	G-A	Hetero	INTERGENIC
SBS	Chr1	35766421	A-T	Hetero	INTRON
SBS	Chr2	31069606	T-C	Hetero	INTERGENIC
SBS	Chr3	6646327	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	12292921	C-T	Homo	INTERGENIC
SBS	Chr4	4692805	G-A	Hetero	INTERGENIC
SBS	Chr4	13314808	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g063300
SBS	Chr4	17346742	C-T	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	29208472	G-T	Hetero	INTRON
SBS	Chr5	4004721	T-A	Hetero	INTERGENIC
SBS	Chr5	21158365	G-T	Hetero	INTERGENIC
SBS	Chr5	28176314	T-G	Homo	SPLICE_SITE_REGION
SBS	Chr6	4176453	A-T	Hetero	INTERGENIC
SBS	Chr6	4992500	G-T	Hetero	INTERGENIC
SBS	Chr6	6048376	C-T	Hetero	INTERGENIC
SBS	Chr6	22039368	C-T	Hetero	INTERGENIC
SBS	Chr7	5956879	A-G	Hetero	INTRON
SBS	Chr7	17975022	C-A	Hetero	INTERGENIC
SBS	Chr7	17975023	A-C	Hetero	INTERGENIC
SBS	Chr7	18843858	G-C	Hetero	INTERGENIC
SBS	Chr7	27886298	C-A	Hetero	INTERGENIC
SBS	Chr8	7493837	G-A	Hetero	INTERGENIC
SBS	Chr8	14184259	C-T	Hetero	INTERGENIC
SBS	Chr8	27048157	G-C	Homo	INTERGENIC
SBS	Chr9	7145203	T-G	Hetero	INTERGENIC
SBS	Chr9	11403704	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g070700
SBS	Chr9	13512981	G-A	Homo	UTR_3_PRIME
SBS	Chr9	16526709	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	6603631	A-T	Homo	INTRON
SBS	Chr11	16778776	C-T	Hetero	INTERGENIC
SBS	Chr11	16778777	G-T	Hetero	INTERGENIC
SBS	Chr11	29688818	G-T	Hetero	INTERGENIC
SBS	Chr12	9469686	G-A	Hetero	INTERGENIC
SBS	Chr12	12692202	A-T	Hetero	INTERGENIC
SBS	Chr12	23998934	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156979	156981	2
Deletion	Chr3	624737	624739	2
Deletion	Chr3	1060174	1060186	12	2
Deletion	Chr2	2439313	2439320	7
Deletion	Chr3	2739000	2739021	21
Deletion	Chr9	12334443	12334444	1	2
Deletion	Chr9	13136572	13136573	1	2
Deletion	Chr9	16026420	16026422	2
Deletion	Chr10	16626776	16626782	6	2
Deletion	Chr8	20558297	20558298	1
Deletion	Chr4	21053489	21053490	1
Deletion	Chr3	21898985	21898992	7	2
Deletion	Chr5	23063010	23063014	4	2
Deletion	Chr5	26849566	26849567	1	2
Deletion	Chr5	26955281	26955282	1	2
Deletion	Chr3	35165037	35165044	7
Deletion	Chr1	39724948	39724957	9	OsKitaake01g429400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	214354	598770	OsKitaake03g003100
Inversion	Chr3	214356	598772	OsKitaake03g003100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes