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Mutant Information

Mutant Name	FN2688-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2688-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6214748 C-T Hetero INTERGENIC
SBS Chr1 6768990 G-T Hetero INTRON
SBS Chr1 6768991 A-T Hetero INTRON
SBS Chr1 8113337 T-A Hetero INTERGENIC
SBS Chr1 11171122 T-C Hetero INTRON
SBS Chr1 30344160 G-A Hetero INTERGENIC
SBS Chr2 11809852 G-A Homo INTRON
SBS Chr2 26974490 G-A Hetero INTERGENIC
SBS Chr2 27496880 A-G Hetero INTERGENIC
SBS Chr3 12475433 T-A Homo SYNONYMOUS_CODING
SBS Chr3 26700818 G-A Hetero INTERGENIC
SBS Chr3 30720849 G-A Hetero INTERGENIC
SBS Chr3 32590745 C-A Hetero INTERGENIC
SBS Chr4 13010665 C-T Hetero INTERGENIC
SBS Chr4 15206205 C-T Homo INTERGENIC
SBS Chr4 15980717 G-A Hetero INTERGENIC
SBS Chr4 16495435 T-A Hetero INTRON
SBS Chr4 17863442 T-A Hetero INTERGENIC
SBS Chr4 17863453 T-C Hetero INTERGENIC
SBS Chr4 21883369 C-G Homo INTERGENIC
SBS Chr4 26928495 C-T Hetero INTERGENIC
SBS Chr4 34849986 A-T Hetero INTRON
SBS Chr4 36936935 G-T Hetero INTRON
SBS Chr5 11396450 T-G Hetero INTERGENIC
SBS Chr5 15542985 G-A Homo INTERGENIC
SBS Chr5 19935939 G-A Homo INTERGENIC
SBS Chr6 2648707 C-T Hetero INTERGENIC
SBS Chr6 2943480 A-T Hetero INTERGENIC
SBS Chr8 15584684 T-A Homo INTERGENIC
SBS Chr8 28114530 A-T Hetero INTRON
SBS Chr9 16985052 C-T Hetero INTERGENIC
SBS Chr9 17018327 C-T Hetero INTERGENIC
SBS Chr10 7237737 C-T Hetero INTERGENIC
SBS Chr11 10764747 G-T Hetero INTERGENIC
SBS Chr11 18921468 C-T Homo INTERGENIC
SBS Chr11 21922357 A-G Hetero INTRON
SBS Chr12 3577116 A-C Hetero SPLICE_SITE_ACCEPTOR OsKitaake12g049900
SBS Chr12 8031486 C-A Hetero INTERGENIC
SBS Chr12 12681621 T-C Hetero INTERGENIC
SBS Chr12 15240477 G-A Hetero INTERGENIC
SBS Chr12 17823817 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 52182 52184 2
Deletion Chr7 5081232 5081235 3
Deletion Chr2 8148920 8148922 2
Deletion Chr7 10897001 10922000 24999 4
Deletion Chr12 12248092 12248094 2
Deletion Chr6 15758741 15758897 156
Deletion Chr10 21878573 21878575 2
Deletion Chr2 35666599 35666601 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 13240544 13240547 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6214748	C-T	Hetero	INTERGENIC
SBS	Chr1	6768990	G-T	Hetero	INTRON
SBS	Chr1	6768991	A-T	Hetero	INTRON
SBS	Chr1	8113337	T-A	Hetero	INTERGENIC
SBS	Chr1	11171122	T-C	Hetero	INTRON
SBS	Chr1	30344160	G-A	Hetero	INTERGENIC
SBS	Chr2	11809852	G-A	Homo	INTRON
SBS	Chr2	26974490	G-A	Hetero	INTERGENIC
SBS	Chr2	27496880	A-G	Hetero	INTERGENIC
SBS	Chr3	12475433	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	26700818	G-A	Hetero	INTERGENIC
SBS	Chr3	30720849	G-A	Hetero	INTERGENIC
SBS	Chr3	32590745	C-A	Hetero	INTERGENIC
SBS	Chr4	13010665	C-T	Hetero	INTERGENIC
SBS	Chr4	15206205	C-T	Homo	INTERGENIC
SBS	Chr4	15980717	G-A	Hetero	INTERGENIC
SBS	Chr4	16495435	T-A	Hetero	INTRON
SBS	Chr4	17863442	T-A	Hetero	INTERGENIC
SBS	Chr4	17863453	T-C	Hetero	INTERGENIC
SBS	Chr4	21883369	C-G	Homo	INTERGENIC
SBS	Chr4	26928495	C-T	Hetero	INTERGENIC
SBS	Chr4	34849986	A-T	Hetero	INTRON
SBS	Chr4	36936935	G-T	Hetero	INTRON
SBS	Chr5	11396450	T-G	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Homo	INTERGENIC
SBS	Chr5	19935939	G-A	Homo	INTERGENIC
SBS	Chr6	2648707	C-T	Hetero	INTERGENIC
SBS	Chr6	2943480	A-T	Hetero	INTERGENIC
SBS	Chr8	15584684	T-A	Homo	INTERGENIC
SBS	Chr8	28114530	A-T	Hetero	INTRON
SBS	Chr9	16985052	C-T	Hetero	INTERGENIC
SBS	Chr9	17018327	C-T	Hetero	INTERGENIC
SBS	Chr10	7237737	C-T	Hetero	INTERGENIC
SBS	Chr11	10764747	G-T	Hetero	INTERGENIC
SBS	Chr11	18921468	C-T	Homo	INTERGENIC
SBS	Chr11	21922357	A-G	Hetero	INTRON
SBS	Chr12	3577116	A-C	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake12g049900
SBS	Chr12	8031486	C-A	Hetero	INTERGENIC
SBS	Chr12	12681621	T-C	Hetero	INTERGENIC
SBS	Chr12	15240477	G-A	Hetero	INTERGENIC
SBS	Chr12	17823817	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	52182	52184	2
Deletion	Chr7	5081232	5081235	3
Deletion	Chr2	8148920	8148922	2
Deletion	Chr7	10897001	10922000	24999	4
Deletion	Chr12	12248092	12248094	2
Deletion	Chr6	15758741	15758897	156
Deletion	Chr10	21878573	21878575	2
Deletion	Chr2	35666599	35666601	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes