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Mutant Information

Mutant Name	FN2689-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2689-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 67

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10475621 G-A Hetero INTERGENIC
SBS Chr1 19961638 A-G Hetero INTERGENIC
SBS Chr1 29893428 G-A Homo INTERGENIC
SBS Chr1 30271419 T-A Hetero INTERGENIC
SBS Chr1 30271420 G-A Hetero INTERGENIC
SBS Chr1 33850581 G-T Hetero INTERGENIC
SBS Chr2 143284 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g002300
SBS Chr2 143285 A-T Hetero SYNONYMOUS_CODING
SBS Chr2 10719239 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g126100
SBS Chr2 10973040 G-A Hetero UTR_5_PRIME
SBS Chr2 19849782 C-A Hetero INTRON
SBS Chr2 28137844 C-T Hetero INTERGENIC
SBS Chr2 31878699 T-C Hetero INTRON
SBS Chr3 2761444 T-A Hetero INTERGENIC
SBS Chr3 3866668 C-T Hetero INTERGENIC
SBS Chr3 5585105 G-T Hetero INTERGENIC
SBS Chr3 11887321 A-C Hetero INTERGENIC
SBS Chr3 19189393 A-G Hetero INTERGENIC
SBS Chr3 28062135 C-T Hetero INTRON
SBS Chr3 31304731 T-A Hetero INTERGENIC
SBS Chr4 1057463 G-T Hetero INTRON
SBS Chr4 3294991 C-A Hetero INTERGENIC
SBS Chr4 5259037 G-A Homo INTERGENIC
SBS Chr4 6140896 C-T Hetero INTERGENIC
SBS Chr4 11195633 C-G Hetero INTERGENIC
SBS Chr4 11628795 A-T Hetero INTERGENIC
SBS Chr4 12711687 C-T Hetero INTERGENIC
SBS Chr4 13336243 G-T Hetero STOP_GAINED OsKitaake04g063400
SBS Chr4 19189486 T-C Hetero INTRON
SBS Chr4 31287271 C-G Hetero UTR_5_PRIME
SBS Chr5 8085836 A-G Hetero INTERGENIC
SBS Chr5 8772369 C-T Hetero INTERGENIC
SBS Chr5 18592509 C-G Hetero INTERGENIC
SBS Chr5 19655787 C-A Hetero INTERGENIC
SBS Chr6 1142516 G-A Hetero INTERGENIC
SBS Chr6 6671145 C-T Hetero INTERGENIC
SBS Chr6 11255483 G-A Hetero INTERGENIC
SBS Chr6 13508876 A-G Hetero INTERGENIC
SBS Chr6 17778597 G-A Homo INTERGENIC
SBS Chr6 19230308 C-A Hetero INTRON
SBS Chr6 27707551 C-T Hetero UTR_3_PRIME
SBS Chr7 2878575 C-T Hetero INTERGENIC
SBS Chr7 6285387 C-T Hetero INTERGENIC
SBS Chr7 6771478 G-C Hetero INTERGENIC
SBS Chr7 8552402 C-T Hetero INTERGENIC
SBS Chr7 8817363 C-T Hetero INTERGENIC
SBS Chr7 9110169 C-A Hetero INTERGENIC
SBS Chr7 10771004 A-T Hetero INTERGENIC
SBS Chr7 12534083 G-T Hetero UTR_3_PRIME
SBS Chr7 20448795 T-C Hetero INTERGENIC
SBS Chr8 2771287 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g030400
SBS Chr8 2771288 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g030400
SBS Chr8 6776100 T-C Homo INTERGENIC
SBS Chr8 10159675 G-A Hetero INTERGENIC
SBS Chr8 18236190 G-A Hetero INTERGENIC
SBS Chr8 18236192 A-G Hetero INTERGENIC
SBS Chr8 22436660 A-T Hetero INTERGENIC
SBS Chr9 5327040 C-T Hetero INTERGENIC
SBS Chr9 8909507 A-T Hetero INTERGENIC
SBS Chr10 5218787 G-C Hetero INTERGENIC
SBS Chr11 15831079 G-C Hetero INTRON
SBS Chr12 4087971 A-G Homo INTERGENIC
SBS Chr12 6252831 G-A Hetero INTERGENIC
SBS Chr12 14651265 G-A Hetero INTERGENIC
SBS Chr12 16133050 G-A Hetero INTERGENIC
SBS Chr12 18766028 C-A Homo INTERGENIC
SBS Chr12 24631337 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3947402 3947404 2
Deletion Chr4 9362474 9362476 2
Deletion Chr11 16778787 16778789 2
Deletion Chr2 20925561 20925562 1
Deletion Chr10 23539072 23539074 2
Deletion Chr2 24406001 24427000 20999
Deletion Chr4 27480001 27677000 196999 33
Deletion Chr8 28304244 28304246 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26845651 26845654 2
Insertion Chr2 114567 114570 2
Insertion Chr2 10772604 10772607 2
Insertion Chr2 29838865 29838868 2
Insertion Chr6 19951499 19951503 3
Insertion Chr3 19260759 19260763 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3541497 Chr5 22885474 2
Translocation Chr6 6765450 Chr4 2963524

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10475621	G-A	Hetero	INTERGENIC
SBS	Chr1	19961638	A-G	Hetero	INTERGENIC
SBS	Chr1	29893428	G-A	Homo	INTERGENIC
SBS	Chr1	30271419	T-A	Hetero	INTERGENIC
SBS	Chr1	30271420	G-A	Hetero	INTERGENIC
SBS	Chr1	33850581	G-T	Hetero	INTERGENIC
SBS	Chr2	143284	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g002300
SBS	Chr2	143285	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	10719239	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g126100
SBS	Chr2	10973040	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	19849782	C-A	Hetero	INTRON
SBS	Chr2	28137844	C-T	Hetero	INTERGENIC
SBS	Chr2	31878699	T-C	Hetero	INTRON
SBS	Chr3	2761444	T-A	Hetero	INTERGENIC
SBS	Chr3	3866668	C-T	Hetero	INTERGENIC
SBS	Chr3	5585105	G-T	Hetero	INTERGENIC
SBS	Chr3	11887321	A-C	Hetero	INTERGENIC
SBS	Chr3	19189393	A-G	Hetero	INTERGENIC
SBS	Chr3	28062135	C-T	Hetero	INTRON
SBS	Chr3	31304731	T-A	Hetero	INTERGENIC
SBS	Chr4	1057463	G-T	Hetero	INTRON
SBS	Chr4	3294991	C-A	Hetero	INTERGENIC
SBS	Chr4	5259037	G-A	Homo	INTERGENIC
SBS	Chr4	6140896	C-T	Hetero	INTERGENIC
SBS	Chr4	11195633	C-G	Hetero	INTERGENIC
SBS	Chr4	11628795	A-T	Hetero	INTERGENIC
SBS	Chr4	12711687	C-T	Hetero	INTERGENIC
SBS	Chr4	13336243	G-T	Hetero	STOP_GAINED	OsKitaake04g063400
SBS	Chr4	19189486	T-C	Hetero	INTRON
SBS	Chr4	31287271	C-G	Hetero	UTR_5_PRIME
SBS	Chr5	8085836	A-G	Hetero	INTERGENIC
SBS	Chr5	8772369	C-T	Hetero	INTERGENIC
SBS	Chr5	18592509	C-G	Hetero	INTERGENIC
SBS	Chr5	19655787	C-A	Hetero	INTERGENIC
SBS	Chr6	1142516	G-A	Hetero	INTERGENIC
SBS	Chr6	6671145	C-T	Hetero	INTERGENIC
SBS	Chr6	11255483	G-A	Hetero	INTERGENIC
SBS	Chr6	13508876	A-G	Hetero	INTERGENIC
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr6	19230308	C-A	Hetero	INTRON
SBS	Chr6	27707551	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	2878575	C-T	Hetero	INTERGENIC
SBS	Chr7	6285387	C-T	Hetero	INTERGENIC
SBS	Chr7	6771478	G-C	Hetero	INTERGENIC
SBS	Chr7	8552402	C-T	Hetero	INTERGENIC
SBS	Chr7	8817363	C-T	Hetero	INTERGENIC
SBS	Chr7	9110169	C-A	Hetero	INTERGENIC
SBS	Chr7	10771004	A-T	Hetero	INTERGENIC
SBS	Chr7	12534083	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	20448795	T-C	Hetero	INTERGENIC
SBS	Chr8	2771287	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g030400
SBS	Chr8	2771288	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g030400
SBS	Chr8	6776100	T-C	Homo	INTERGENIC
SBS	Chr8	10159675	G-A	Hetero	INTERGENIC
SBS	Chr8	18236190	G-A	Hetero	INTERGENIC
SBS	Chr8	18236192	A-G	Hetero	INTERGENIC
SBS	Chr8	22436660	A-T	Hetero	INTERGENIC
SBS	Chr9	5327040	C-T	Hetero	INTERGENIC
SBS	Chr9	8909507	A-T	Hetero	INTERGENIC
SBS	Chr10	5218787	G-C	Hetero	INTERGENIC
SBS	Chr11	15831079	G-C	Hetero	INTRON
SBS	Chr12	4087971	A-G	Homo	INTERGENIC
SBS	Chr12	6252831	G-A	Hetero	INTERGENIC
SBS	Chr12	14651265	G-A	Hetero	INTERGENIC
SBS	Chr12	16133050	G-A	Hetero	INTERGENIC
SBS	Chr12	18766028	C-A	Homo	INTERGENIC
SBS	Chr12	24631337	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3947402	3947404	2
Deletion	Chr4	9362474	9362476	2
Deletion	Chr11	16778787	16778789	2
Deletion	Chr2	20925561	20925562	1
Deletion	Chr10	23539072	23539074	2
Deletion	Chr2	24406001	24427000	20999
Deletion	Chr4	27480001	27677000	196999	33
Deletion	Chr8	28304244	28304246	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3541497	Chr5	22885474	2
Translocation	Chr6	6765450	Chr4	2963524

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes