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Mutant Information

Mutant Name	FN2690-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2690-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9219391 G-A Hetero INTERGENIC
SBS Chr1 12654486 G-C Hetero INTERGENIC
SBS Chr1 15662911 G-A Homo SYNONYMOUS_CODING
SBS Chr1 15662912 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g170400
SBS Chr1 19487747 C-T Hetero INTERGENIC
SBS Chr2 3393847 C-A Homo INTERGENIC
SBS Chr2 6314722 T-C Homo INTRON
SBS Chr2 18538390 T-A Hetero INTERGENIC
SBS Chr2 32365530 C-T Homo INTERGENIC
SBS Chr3 1814673 C-T Hetero INTRON
SBS Chr3 2644080 C-A Homo INTERGENIC
SBS Chr3 17487886 G-T Hetero UTR_5_PRIME
SBS Chr3 17487887 A-C Hetero UTR_5_PRIME
SBS Chr3 35585035 C-T Homo UTR_3_PRIME
SBS Chr4 8288891 G-A Hetero INTRON
SBS Chr4 12177128 G-T Hetero INTERGENIC
SBS Chr4 13976322 A-G Hetero INTRON
SBS Chr4 27795747 G-A Hetero INTERGENIC
SBS Chr4 35535969 T-A Hetero INTERGENIC
SBS Chr5 645357 A-G Hetero INTRON
SBS Chr5 4238244 T-C Homo INTERGENIC
SBS Chr5 10125580 G-A Hetero INTERGENIC
SBS Chr5 14975301 C-T Hetero INTERGENIC
SBS Chr5 20452085 C-G Homo INTERGENIC
SBS Chr5 20492740 A-C Homo INTRON
SBS Chr7 16398057 T-C Hetero INTERGENIC
SBS Chr7 28688766 C-T Hetero INTERGENIC
SBS Chr8 3242925 A-T Hetero INTERGENIC
SBS Chr8 4525008 G-A Hetero INTRON
SBS Chr8 7368269 G-A Hetero INTERGENIC
SBS Chr8 9566958 T-C Hetero INTERGENIC
SBS Chr8 16615510 G-A Hetero INTERGENIC
SBS Chr8 16790287 T-A Homo INTERGENIC
SBS Chr9 4195055 C-A Homo INTERGENIC
SBS Chr9 14930994 T-A Hetero INTERGENIC
SBS Chr11 15207031 G-A Homo INTERGENIC
SBS Chr11 15209584 A-G Hetero INTERGENIC
SBS Chr11 16885407 T-C Hetero INTERGENIC
SBS Chr11 18694850 G-A Hetero INTERGENIC
SBS Chr11 19602333 C-A Homo INTERGENIC
SBS Chr11 26829785 A-G Hetero INTERGENIC
SBS Chr11 28383896 C-T Hetero INTERGENIC
SBS Chr12 3790946 G-A Hetero INTERGENIC
SBS Chr12 10631683 G-A Hetero INTERGENIC
SBS Chr12 15761384 A-C Hetero INTERGENIC
SBS Chr12 19624011 T-C Hetero UTR_3_PRIME
SBS Chr12 19966383 A-G Hetero INTERGENIC
SBS Chr12 20242195 T-C Hetero INTERGENIC
SBS Chr12 23328227 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1627014 1627016 2 OsKitaake07g022100
Deletion Chr9 5286652 5286653 1
Deletion Chr12 5439001 5482000 42999 2
Deletion Chr10 6705878 6705888 10
Deletion Chr1 10234321 10234323 2
Deletion Chr3 10350008 10350011 3
Deletion Chr1 14379614 14379615 1 OsKitaake01g163900
Deletion Chr9 17846874 17846876 2
Deletion Chr9 17957240 17957242 2
Deletion Chr10 19925588 19925600 12
Deletion Chr6 20663990 20663992 2
Deletion Chr11 22303495 22303496 1 OsKitaake11g176800
Deletion Chr2 23914001 23953000 38999 5
Deletion Chr2 36400008 36400009 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8969340 8969343 2
Insertion Chr5 3714656 3714660 3
Insertion Chr7 15700486 15700490 3

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 13760275 Chr1 40038514 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9219391	G-A	Hetero	INTERGENIC
SBS	Chr1	12654486	G-C	Hetero	INTERGENIC
SBS	Chr1	15662911	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	15662912	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g170400
SBS	Chr1	19487747	C-T	Hetero	INTERGENIC
SBS	Chr2	3393847	C-A	Homo	INTERGENIC
SBS	Chr2	6314722	T-C	Homo	INTRON
SBS	Chr2	18538390	T-A	Hetero	INTERGENIC
SBS	Chr2	32365530	C-T	Homo	INTERGENIC
SBS	Chr3	1814673	C-T	Hetero	INTRON
SBS	Chr3	2644080	C-A	Homo	INTERGENIC
SBS	Chr3	17487886	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	17487887	A-C	Hetero	UTR_5_PRIME
SBS	Chr3	35585035	C-T	Homo	UTR_3_PRIME
SBS	Chr4	8288891	G-A	Hetero	INTRON
SBS	Chr4	12177128	G-T	Hetero	INTERGENIC
SBS	Chr4	13976322	A-G	Hetero	INTRON
SBS	Chr4	27795747	G-A	Hetero	INTERGENIC
SBS	Chr4	35535969	T-A	Hetero	INTERGENIC
SBS	Chr5	645357	A-G	Hetero	INTRON
SBS	Chr5	4238244	T-C	Homo	INTERGENIC
SBS	Chr5	10125580	G-A	Hetero	INTERGENIC
SBS	Chr5	14975301	C-T	Hetero	INTERGENIC
SBS	Chr5	20452085	C-G	Homo	INTERGENIC
SBS	Chr5	20492740	A-C	Homo	INTRON
SBS	Chr7	16398057	T-C	Hetero	INTERGENIC
SBS	Chr7	28688766	C-T	Hetero	INTERGENIC
SBS	Chr8	3242925	A-T	Hetero	INTERGENIC
SBS	Chr8	4525008	G-A	Hetero	INTRON
SBS	Chr8	7368269	G-A	Hetero	INTERGENIC
SBS	Chr8	9566958	T-C	Hetero	INTERGENIC
SBS	Chr8	16615510	G-A	Hetero	INTERGENIC
SBS	Chr8	16790287	T-A	Homo	INTERGENIC
SBS	Chr9	4195055	C-A	Homo	INTERGENIC
SBS	Chr9	14930994	T-A	Hetero	INTERGENIC
SBS	Chr11	15207031	G-A	Homo	INTERGENIC
SBS	Chr11	15209584	A-G	Hetero	INTERGENIC
SBS	Chr11	16885407	T-C	Hetero	INTERGENIC
SBS	Chr11	18694850	G-A	Hetero	INTERGENIC
SBS	Chr11	19602333	C-A	Homo	INTERGENIC
SBS	Chr11	26829785	A-G	Hetero	INTERGENIC
SBS	Chr11	28383896	C-T	Hetero	INTERGENIC
SBS	Chr12	3790946	G-A	Hetero	INTERGENIC
SBS	Chr12	10631683	G-A	Hetero	INTERGENIC
SBS	Chr12	15761384	A-C	Hetero	INTERGENIC
SBS	Chr12	19624011	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	19966383	A-G	Hetero	INTERGENIC
SBS	Chr12	20242195	T-C	Hetero	INTERGENIC
SBS	Chr12	23328227	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1627014	1627016	2	OsKitaake07g022100
Deletion	Chr9	5286652	5286653	1
Deletion	Chr12	5439001	5482000	42999	2
Deletion	Chr10	6705878	6705888	10
Deletion	Chr1	10234321	10234323	2
Deletion	Chr3	10350008	10350011	3
Deletion	Chr1	14379614	14379615	1	OsKitaake01g163900
Deletion	Chr9	17846874	17846876	2
Deletion	Chr9	17957240	17957242	2
Deletion	Chr10	19925588	19925600	12
Deletion	Chr6	20663990	20663992	2
Deletion	Chr11	22303495	22303496	1	OsKitaake11g176800
Deletion	Chr2	23914001	23953000	38999	5
Deletion	Chr2	36400008	36400009	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	13760275	Chr1	40038514	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes