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Mutant Information

Mutant Name	FN2691-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2691-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2993473 G-A Hetero INTERGENIC
SBS Chr1 4268843 T-A Hetero UTR_3_PRIME
SBS Chr1 4268844 C-A Hetero UTR_3_PRIME
SBS Chr1 9200995 C-T Homo INTERGENIC
SBS Chr1 10814363 C-T Homo INTERGENIC
SBS Chr1 12075528 G-A Hetero INTERGENIC
SBS Chr1 20804299 T-A Hetero INTERGENIC
SBS Chr1 22198260 C-A Hetero INTERGENIC
SBS Chr1 26714530 G-C Hetero INTERGENIC
SBS Chr1 40101512 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g434900
SBS Chr1 42191906 C-A Hetero INTERGENIC
SBS Chr2 10792216 C-T Hetero INTERGENIC
SBS Chr3 22059743 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g241258
SBS Chr3 24142265 C-A Homo INTRON
SBS Chr3 24142267 T-A Homo INTRON
SBS Chr4 713990 G-T Hetero INTERGENIC
SBS Chr4 1575457 A-G Hetero INTERGENIC
SBS Chr4 20296664 C-T Hetero INTERGENIC
SBS Chr4 20599539 C-A Hetero INTERGENIC
SBS Chr4 20819998 C-A Hetero INTERGENIC
SBS Chr4 21985424 T-C Hetero INTRON
SBS Chr4 29845240 A-T Hetero INTERGENIC
SBS Chr4 32149994 G-A Homo INTERGENIC
SBS Chr5 12539066 G-A Hetero INTERGENIC
SBS Chr5 12539067 C-G Hetero INTERGENIC
SBS Chr5 23092447 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g192200
SBS Chr5 27596698 G-A Hetero INTERGENIC
SBS Chr5 29992323 C-T Hetero INTERGENIC
SBS Chr5 30063823 G-T Hetero INTERGENIC
SBS Chr6 3786730 T-G Hetero INTERGENIC
SBS Chr6 11032008 C-T Hetero INTERGENIC
SBS Chr6 12151412 A-G Hetero INTERGENIC
SBS Chr6 13125186 G-A Hetero INTERGENIC
SBS Chr6 16053374 G-A Homo INTERGENIC
SBS Chr6 21380550 A-G Hetero INTERGENIC
SBS Chr6 30621003 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g288700
SBS Chr7 8604877 C-A Homo INTERGENIC
SBS Chr7 9653754 G-A Homo INTERGENIC
SBS Chr7 19032382 A-T Hetero INTERGENIC
SBS Chr7 19252477 A-T Homo INTERGENIC
SBS Chr7 24917787 A-C Hetero INTERGENIC
SBS Chr7 27439119 G-A Hetero INTERGENIC
SBS Chr7 29190421 T-C Hetero INTERGENIC
SBS Chr7 29589857 G-A Hetero INTERGENIC
SBS Chr8 8512068 C-T Hetero INTERGENIC
SBS Chr10 1858877 C-T Hetero INTERGENIC
SBS Chr10 3080864 T-G Hetero INTERGENIC
SBS Chr10 6443844 T-C Homo INTERGENIC
SBS Chr10 10832617 T-A Homo INTERGENIC
SBS Chr10 23926835 A-G Hetero INTRON
SBS Chr11 7878249 C-A Hetero INTERGENIC
SBS Chr11 8364997 G-A Homo INTERGENIC
SBS Chr11 8737787 G-A Hetero INTERGENIC
SBS Chr11 13506394 C-T Hetero INTERGENIC
SBS Chr12 733371 C-A Homo INTERGENIC
SBS Chr12 1074847 G-A Homo SYNONYMOUS_CODING
SBS Chr12 3258213 T-C Hetero INTERGENIC
SBS Chr12 8468275 G-A Hetero INTERGENIC
SBS Chr12 12680099 T-A Hetero INTERGENIC
SBS Chr12 12680100 G-T Hetero INTERGENIC
SBS Chr12 13959229 G-C Hetero INTERGENIC
SBS Chr12 15060329 T-A Homo INTERGENIC
SBS Chr12 22764838 T-A Hetero INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 56230 56232 2
Deletion Chr10 511001 853000 341999 22
Deletion Chr12 733766 733768 2
Deletion Chr12 929469 929512 43
Deletion Chr8 2335551 2335552 1
Deletion Chr11 3888001 3982000 93999 7
Deletion Chr7 5277196 5277198 2
Deletion Chr10 6978884 6978904 20
Deletion Chr4 7045524 7045535 11
Deletion Chr5 7367055 7367058 3
Deletion Chr10 10748845 10748847 2
Deletion Chr3 12063526 12063532 6
Deletion Chr12 12455462 12455474 12
Deletion Chr4 13006581 13006583 2
Deletion Chr6 13543372 13543374 2
Deletion Chr11 13817748 13817750 2
Deletion Chr11 14201309 14201322 13
Deletion Chr12 15012776 15012787 11
Deletion Chr11 16936142 16936143 1
Deletion Chr11 17314001 17328000 13999 2
Deletion Chr8 19588564 19588565 1
Deletion Chr12 21296583 21296587 4
Deletion Chr1 22441549 22441561 12
Deletion Chr3 22524763 22524764 1
Deletion Chr5 23074783 23074786 3
Deletion Chr7 23808823 23808831 8
Deletion Chr12 26660454 26660457 3
Deletion Chr3 27626587 27626588 1
Deletion Chr2 27974325 27974326 1
Deletion Chr2 29228113 29228123 10
Deletion Chr1 42091309 42091311 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17990256 17990259 2
Insertion Chr5 21931272 21931277 4
Insertion Chr8 17078070 17078073 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 13418005 13447984 OsKitaake11g115400
Inversion Chr11 13418023 13447992 OsKitaake11g115400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5044441 Chr10 16847985 OsKitaake10g115200
Translocation Chr11 5044849 Chr10 16847978 OsKitaake10g115200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2993473	G-A	Hetero	INTERGENIC
SBS	Chr1	4268843	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	4268844	C-A	Hetero	UTR_3_PRIME
SBS	Chr1	9200995	C-T	Homo	INTERGENIC
SBS	Chr1	10814363	C-T	Homo	INTERGENIC
SBS	Chr1	12075528	G-A	Hetero	INTERGENIC
SBS	Chr1	20804299	T-A	Hetero	INTERGENIC
SBS	Chr1	22198260	C-A	Hetero	INTERGENIC
SBS	Chr1	26714530	G-C	Hetero	INTERGENIC
SBS	Chr1	40101512	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g434900
SBS	Chr1	42191906	C-A	Hetero	INTERGENIC
SBS	Chr2	10792216	C-T	Hetero	INTERGENIC
SBS	Chr3	22059743	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241258
SBS	Chr3	24142265	C-A	Homo	INTRON
SBS	Chr3	24142267	T-A	Homo	INTRON
SBS	Chr4	713990	G-T	Hetero	INTERGENIC
SBS	Chr4	1575457	A-G	Hetero	INTERGENIC
SBS	Chr4	20296664	C-T	Hetero	INTERGENIC
SBS	Chr4	20599539	C-A	Hetero	INTERGENIC
SBS	Chr4	20819998	C-A	Hetero	INTERGENIC
SBS	Chr4	21985424	T-C	Hetero	INTRON
SBS	Chr4	29845240	A-T	Hetero	INTERGENIC
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr5	12539066	G-A	Hetero	INTERGENIC
SBS	Chr5	12539067	C-G	Hetero	INTERGENIC
SBS	Chr5	23092447	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g192200
SBS	Chr5	27596698	G-A	Hetero	INTERGENIC
SBS	Chr5	29992323	C-T	Hetero	INTERGENIC
SBS	Chr5	30063823	G-T	Hetero	INTERGENIC
SBS	Chr6	3786730	T-G	Hetero	INTERGENIC
SBS	Chr6	11032008	C-T	Hetero	INTERGENIC
SBS	Chr6	12151412	A-G	Hetero	INTERGENIC
SBS	Chr6	13125186	G-A	Hetero	INTERGENIC
SBS	Chr6	16053374	G-A	Homo	INTERGENIC
SBS	Chr6	21380550	A-G	Hetero	INTERGENIC
SBS	Chr6	30621003	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g288700
SBS	Chr7	8604877	C-A	Homo	INTERGENIC
SBS	Chr7	9653754	G-A	Homo	INTERGENIC
SBS	Chr7	19032382	A-T	Hetero	INTERGENIC
SBS	Chr7	19252477	A-T	Homo	INTERGENIC
SBS	Chr7	24917787	A-C	Hetero	INTERGENIC
SBS	Chr7	27439119	G-A	Hetero	INTERGENIC
SBS	Chr7	29190421	T-C	Hetero	INTERGENIC
SBS	Chr7	29589857	G-A	Hetero	INTERGENIC
SBS	Chr8	8512068	C-T	Hetero	INTERGENIC
SBS	Chr10	1858877	C-T	Hetero	INTERGENIC
SBS	Chr10	3080864	T-G	Hetero	INTERGENIC
SBS	Chr10	6443844	T-C	Homo	INTERGENIC
SBS	Chr10	10832617	T-A	Homo	INTERGENIC
SBS	Chr10	23926835	A-G	Hetero	INTRON
SBS	Chr11	7878249	C-A	Hetero	INTERGENIC
SBS	Chr11	8364997	G-A	Homo	INTERGENIC
SBS	Chr11	8737787	G-A	Hetero	INTERGENIC
SBS	Chr11	13506394	C-T	Hetero	INTERGENIC
SBS	Chr12	733371	C-A	Homo	INTERGENIC
SBS	Chr12	1074847	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr12	3258213	T-C	Hetero	INTERGENIC
SBS	Chr12	8468275	G-A	Hetero	INTERGENIC
SBS	Chr12	12680099	T-A	Hetero	INTERGENIC
SBS	Chr12	12680100	G-T	Hetero	INTERGENIC
SBS	Chr12	13959229	G-C	Hetero	INTERGENIC
SBS	Chr12	15060329	T-A	Homo	INTERGENIC
SBS	Chr12	22764838	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	56230	56232	2
Deletion	Chr10	511001	853000	341999	22
Deletion	Chr12	733766	733768	2
Deletion	Chr12	929469	929512	43
Deletion	Chr8	2335551	2335552	1
Deletion	Chr11	3888001	3982000	93999	7
Deletion	Chr7	5277196	5277198	2
Deletion	Chr10	6978884	6978904	20
Deletion	Chr4	7045524	7045535	11
Deletion	Chr5	7367055	7367058	3
Deletion	Chr10	10748845	10748847	2
Deletion	Chr3	12063526	12063532	6
Deletion	Chr12	12455462	12455474	12
Deletion	Chr4	13006581	13006583	2
Deletion	Chr6	13543372	13543374	2
Deletion	Chr11	13817748	13817750	2
Deletion	Chr11	14201309	14201322	13
Deletion	Chr12	15012776	15012787	11
Deletion	Chr11	16936142	16936143	1
Deletion	Chr11	17314001	17328000	13999	2
Deletion	Chr8	19588564	19588565	1
Deletion	Chr12	21296583	21296587	4
Deletion	Chr1	22441549	22441561	12
Deletion	Chr3	22524763	22524764	1
Deletion	Chr5	23074783	23074786	3
Deletion	Chr7	23808823	23808831	8
Deletion	Chr12	26660454	26660457	3
Deletion	Chr3	27626587	27626588	1
Deletion	Chr2	27974325	27974326	1
Deletion	Chr2	29228113	29228123	10
Deletion	Chr1	42091309	42091311	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	13418005	13447984	OsKitaake11g115400
Inversion	Chr11	13418023	13447992	OsKitaake11g115400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes