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Mutant Information

Mutant Name	FN2692-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2692-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 757688 G-A Hetero INTERGENIC
SBS Chr1 2035095 A-T Hetero INTRON
SBS Chr1 13080580 T-C Hetero INTRON
SBS Chr1 13198994 A-T Hetero INTERGENIC
SBS Chr1 28852845 A-G Homo INTRON
SBS Chr1 30381120 C-T Homo INTERGENIC
SBS Chr1 30660461 G-T Homo INTERGENIC
SBS Chr1 37909862 C-T Hetero INTERGENIC
SBS Chr1 42589691 G-A Hetero INTERGENIC
SBS Chr2 8380149 T-C Hetero INTERGENIC
SBS Chr2 18394722 G-A Hetero INTERGENIC
SBS Chr2 19186959 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g187700
SBS Chr2 29059006 C-T Hetero INTERGENIC
SBS Chr2 31797190 T-C Hetero INTERGENIC
SBS Chr3 1440788 G-A Hetero INTERGENIC
SBS Chr3 1775230 G-A Hetero INTERGENIC
SBS Chr3 4070777 G-A Hetero INTERGENIC
SBS Chr3 5044607 A-T Hetero INTERGENIC
SBS Chr3 5044608 A-T Hetero INTERGENIC
SBS Chr3 15062589 G-A Hetero INTRON
SBS Chr3 17123785 T-C Hetero INTERGENIC
SBS Chr3 22632042 T-C Hetero INTERGENIC
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr3 34557479 A-G Hetero INTERGENIC
SBS Chr3 36024372 T-A Hetero INTRON
SBS Chr3 37139964 A-T Hetero INTERGENIC
SBS Chr4 3820025 C-G Hetero INTERGENIC
SBS Chr4 21355179 G-T Hetero INTERGENIC
SBS Chr4 24207838 G-A Hetero INTERGENIC
SBS Chr4 25179512 G-A Hetero INTERGENIC
SBS Chr4 27273850 T-G Hetero INTERGENIC
SBS Chr5 8265424 G-A Homo INTERGENIC
SBS Chr5 17826709 G-C Hetero UTR_3_PRIME
SBS Chr5 23895933 C-G Hetero INTERGENIC
SBS Chr5 24555555 G-A Hetero INTERGENIC
SBS Chr5 24555556 G-A Hetero INTERGENIC
SBS Chr6 5463125 G-A Hetero INTERGENIC
SBS Chr6 7782601 A-T Hetero INTRON
SBS Chr6 16559266 G-A Hetero INTERGENIC
SBS Chr6 18712952 T-A Hetero INTERGENIC
SBS Chr6 20833231 T-G Hetero INTERGENIC
SBS Chr6 22995128 A-T Hetero INTERGENIC
SBS Chr6 27393764 C-T Hetero INTERGENIC
SBS Chr6 28370830 G-A Hetero INTERGENIC
SBS Chr7 16725820 C-T Homo INTERGENIC
SBS Chr7 22189606 T-G Hetero INTERGENIC
SBS Chr8 1878926 G-A Hetero INTERGENIC
SBS Chr8 3370566 T-A Hetero INTRON
SBS Chr8 3632721 C-T Hetero UTR_5_PRIME
SBS Chr8 5944445 A-G Hetero INTERGENIC
SBS Chr8 18319657 C-A Hetero INTERGENIC
SBS Chr9 8316717 C-T Hetero INTERGENIC
SBS Chr10 12255076 T-A Hetero INTRON
SBS Chr11 10675325 C-A Hetero INTRON
SBS Chr11 20514161 G-A Hetero INTERGENIC
SBS Chr11 21397326 G-A Hetero INTERGENIC
SBS Chr12 8809596 G-A Hetero INTRON

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 25001 137000 111999 3
Deletion Chr9 584001 606000 21999
Deletion Chr4 1616131 1616133 2
Deletion Chr3 6540161 6540164 3
Deletion Chr1 6580280 6580282 2
Deletion Chr1 7633574 7633581 7 OsKitaake01g095900
Deletion Chr1 9403296 9403297 1
Deletion Chr4 9458303 9458311 8
Deletion Chr1 10272854 10272862 8 OsKitaake01g128800
Deletion Chr9 13335138 13335145 7
Deletion Chr1 15475702 15475705 3
Deletion Chr12 16616333 16616343 10 OsKitaake12g125000
Deletion Chr5 18035321 18035325 4
Deletion Chr5 19325448 19325450 2
Deletion Chr5 20535001 21003000 467999 55
Deletion Chr5 21672001 21711000 38999 4
Deletion Chr5 21767001 21813000 45999 7
Deletion Chr10 22251405 22251406 1 OsKitaake10g181700
Deletion Chr7 24851001 24872000 20999 6
Deletion Chr11 25150455 25150457 2
Deletion Chr3 25646367 25646384 17
Deletion Chr8 28701495 28701497 2
Deletion Chr2 32566891 32566896 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13791199 13791202 2
Insertion Chr12 25593228 25593231 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 13540903 13808819 OsKitaake09g093400
Inversion Chr9 13540922 13582282

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	757688	G-A	Hetero	INTERGENIC
SBS	Chr1	2035095	A-T	Hetero	INTRON
SBS	Chr1	13080580	T-C	Hetero	INTRON
SBS	Chr1	13198994	A-T	Hetero	INTERGENIC
SBS	Chr1	28852845	A-G	Homo	INTRON
SBS	Chr1	30381120	C-T	Homo	INTERGENIC
SBS	Chr1	30660461	G-T	Homo	INTERGENIC
SBS	Chr1	37909862	C-T	Hetero	INTERGENIC
SBS	Chr1	42589691	G-A	Hetero	INTERGENIC
SBS	Chr2	8380149	T-C	Hetero	INTERGENIC
SBS	Chr2	18394722	G-A	Hetero	INTERGENIC
SBS	Chr2	19186959	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g187700
SBS	Chr2	29059006	C-T	Hetero	INTERGENIC
SBS	Chr2	31797190	T-C	Hetero	INTERGENIC
SBS	Chr3	1440788	G-A	Hetero	INTERGENIC
SBS	Chr3	1775230	G-A	Hetero	INTERGENIC
SBS	Chr3	4070777	G-A	Hetero	INTERGENIC
SBS	Chr3	5044607	A-T	Hetero	INTERGENIC
SBS	Chr3	5044608	A-T	Hetero	INTERGENIC
SBS	Chr3	15062589	G-A	Hetero	INTRON
SBS	Chr3	17123785	T-C	Hetero	INTERGENIC
SBS	Chr3	22632042	T-C	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr3	34557479	A-G	Hetero	INTERGENIC
SBS	Chr3	36024372	T-A	Hetero	INTRON
SBS	Chr3	37139964	A-T	Hetero	INTERGENIC
SBS	Chr4	3820025	C-G	Hetero	INTERGENIC
SBS	Chr4	21355179	G-T	Hetero	INTERGENIC
SBS	Chr4	24207838	G-A	Hetero	INTERGENIC
SBS	Chr4	25179512	G-A	Hetero	INTERGENIC
SBS	Chr4	27273850	T-G	Hetero	INTERGENIC
SBS	Chr5	8265424	G-A	Homo	INTERGENIC
SBS	Chr5	17826709	G-C	Hetero	UTR_3_PRIME
SBS	Chr5	23895933	C-G	Hetero	INTERGENIC
SBS	Chr5	24555555	G-A	Hetero	INTERGENIC
SBS	Chr5	24555556	G-A	Hetero	INTERGENIC
SBS	Chr6	5463125	G-A	Hetero	INTERGENIC
SBS	Chr6	7782601	A-T	Hetero	INTRON
SBS	Chr6	16559266	G-A	Hetero	INTERGENIC
SBS	Chr6	18712952	T-A	Hetero	INTERGENIC
SBS	Chr6	20833231	T-G	Hetero	INTERGENIC
SBS	Chr6	22995128	A-T	Hetero	INTERGENIC
SBS	Chr6	27393764	C-T	Hetero	INTERGENIC
SBS	Chr6	28370830	G-A	Hetero	INTERGENIC
SBS	Chr7	16725820	C-T	Homo	INTERGENIC
SBS	Chr7	22189606	T-G	Hetero	INTERGENIC
SBS	Chr8	1878926	G-A	Hetero	INTERGENIC
SBS	Chr8	3370566	T-A	Hetero	INTRON
SBS	Chr8	3632721	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	5944445	A-G	Hetero	INTERGENIC
SBS	Chr8	18319657	C-A	Hetero	INTERGENIC
SBS	Chr9	8316717	C-T	Hetero	INTERGENIC
SBS	Chr10	12255076	T-A	Hetero	INTRON
SBS	Chr11	10675325	C-A	Hetero	INTRON
SBS	Chr11	20514161	G-A	Hetero	INTERGENIC
SBS	Chr11	21397326	G-A	Hetero	INTERGENIC
SBS	Chr12	8809596	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	25001	137000	111999	3
Deletion	Chr9	584001	606000	21999
Deletion	Chr4	1616131	1616133	2
Deletion	Chr3	6540161	6540164	3
Deletion	Chr1	6580280	6580282	2
Deletion	Chr1	7633574	7633581	7	OsKitaake01g095900
Deletion	Chr1	9403296	9403297	1
Deletion	Chr4	9458303	9458311	8
Deletion	Chr1	10272854	10272862	8	OsKitaake01g128800
Deletion	Chr9	13335138	13335145	7
Deletion	Chr1	15475702	15475705	3
Deletion	Chr12	16616333	16616343	10	OsKitaake12g125000
Deletion	Chr5	18035321	18035325	4
Deletion	Chr5	19325448	19325450	2
Deletion	Chr5	20535001	21003000	467999	55
Deletion	Chr5	21672001	21711000	38999	4
Deletion	Chr5	21767001	21813000	45999	7
Deletion	Chr10	22251405	22251406	1	OsKitaake10g181700
Deletion	Chr7	24851001	24872000	20999	6
Deletion	Chr11	25150455	25150457	2
Deletion	Chr3	25646367	25646384	17
Deletion	Chr8	28701495	28701497	2
Deletion	Chr2	32566891	32566896	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13540903	13808819	OsKitaake09g093400
Inversion	Chr9	13540922	13582282

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes