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Mutant Information

Mutant Name	FN2696-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2696-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5881809 C-T Hetero INTERGENIC
SBS Chr1 14184188 C-A Hetero INTERGENIC
SBS Chr1 20453314 C-T Homo INTERGENIC
SBS Chr1 43186396 G-T Homo INTERGENIC
SBS Chr2 7940842 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g102850
SBS Chr2 27156509 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g272600
SBS Chr2 32482296 C-T Homo INTERGENIC
SBS Chr2 34625871 C-T Hetero INTERGENIC
SBS Chr3 6745722 C-T Hetero INTERGENIC
SBS Chr3 19820752 C-T Hetero INTERGENIC
SBS Chr3 20156755 G-A Hetero INTERGENIC
SBS Chr3 26300092 C-T Hetero INTERGENIC
SBS Chr3 34007481 C-T Hetero INTERGENIC
SBS Chr3 37261802 C-A Hetero UTR_3_PRIME
SBS Chr4 2966018 C-T Hetero INTERGENIC
SBS Chr4 7910437 C-T Homo INTERGENIC
SBS Chr4 10096653 T-A Hetero INTERGENIC
SBS Chr4 18096423 C-T Hetero INTERGENIC
SBS Chr4 22079278 T-G Hetero INTERGENIC
SBS Chr4 22273608 T-C Hetero INTERGENIC
SBS Chr4 25457568 A-G Hetero INTERGENIC
SBS Chr4 34518796 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g287600
SBS Chr5 26405619 C-G Hetero INTERGENIC
SBS Chr6 5285619 G-A Hetero INTERGENIC
SBS Chr6 6411255 C-T Hetero START_GAINED
SBS Chr6 6522642 A-T Hetero INTERGENIC
SBS Chr6 7479992 C-T Hetero INTERGENIC
SBS Chr6 17647386 C-A Hetero INTERGENIC
SBS Chr6 22111009 C-T Hetero INTERGENIC
SBS Chr7 17904646 C-T Hetero INTERGENIC
SBS Chr7 19506084 C-A Hetero INTERGENIC
SBS Chr7 19753886 T-C Hetero INTERGENIC
SBS Chr7 22973358 G-C Hetero INTERGENIC
SBS Chr7 24841372 C-A Hetero INTERGENIC
SBS Chr7 27501024 A-G Hetero INTERGENIC
SBS Chr7 28095973 A-T Hetero INTERGENIC
SBS Chr8 5914302 T-A Hetero INTRON
SBS Chr8 12292124 A-G Homo INTERGENIC
SBS Chr9 10618229 T-A Hetero INTERGENIC
SBS Chr9 14023762 G-T Hetero INTRON
SBS Chr10 5497708 C-T Hetero INTERGENIC
SBS Chr10 7851147 C-T Hetero INTERGENIC
SBS Chr10 12777071 G-A Hetero INTERGENIC
SBS Chr10 13781751 A-G Hetero UTR_3_PRIME
SBS Chr10 17229900 A-T Homo INTERGENIC
SBS Chr11 9358494 T-A Hetero INTERGENIC
SBS Chr11 11245459 C-G Hetero INTERGENIC
SBS Chr11 11475215 T-C Hetero INTERGENIC
SBS Chr11 18868459 T-C Hetero INTERGENIC
SBS Chr11 21924295 A-G Hetero INTERGENIC
SBS Chr11 23414490 C-T Homo INTERGENIC
SBS Chr11 24112517 T-A Hetero INTERGENIC
SBS Chr11 27501014 G-A Hetero INTERGENIC
SBS Chr12 1118569 T-C Homo INTERGENIC
SBS Chr12 18867926 C-A Hetero INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC
SBS Chr12 23529355 C-G Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 797382 797401 19
Deletion Chr5 2782232 2782249 17
Deletion Chr11 3752325 3752332 7 OsKitaake11g052300
Deletion Chr2 6338067 6338069 2
Deletion Chr6 7260001 7366000 105999 22
Deletion Chr6 7589001 7634000 44999 3
Deletion Chr12 10445590 10445605 15
Deletion Chr10 10484387 10484389 2
Deletion Chr2 11008029 11008033 4
Deletion Chr11 11088001 11120000 31999 2
Deletion Chr12 13108001 13108018 17
Deletion Chr10 15954704 15954707 3
Deletion Chr11 16735145 16735148 3
Deletion Chr4 17555384 17555385 1
Deletion Chr11 18604425 18604441 16
Deletion Chr10 22194458 22194461 3 OsKitaake10g181000
Deletion Chr4 22927962 22927963 1
Deletion Chr4 24408722 24408724 2
Deletion Chr8 28372810 28372812 2
Deletion Chr1 29180569 29180571 2
Deletion Chr1 39075365 39075379 14

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27269407 27269410 2
Insertion Chr2 33682053 33682056 2
Insertion Chr3 13005259 13005263 3
Insertion Chr7 1048777 1048790 12

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 9492122 9531265 OsKitaake12g092000
Inversion Chr12 9492123 9531267 OsKitaake12g092000
Inversion Chr6 9637371 9638244 OsKitaake06g113400
Inversion Chr6 9637505 9638244 OsKitaake06g113400
Inversion Chr7 10313705 10577780

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 395129 Chr6 9637495 OsKitaake06g113400
Translocation Chr8 395130 Chr6 9637386 OsKitaake06g113400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5881809	C-T	Hetero	INTERGENIC
SBS	Chr1	14184188	C-A	Hetero	INTERGENIC
SBS	Chr1	20453314	C-T	Homo	INTERGENIC
SBS	Chr1	43186396	G-T	Homo	INTERGENIC
SBS	Chr2	7940842	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g102850
SBS	Chr2	27156509	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g272600
SBS	Chr2	32482296	C-T	Homo	INTERGENIC
SBS	Chr2	34625871	C-T	Hetero	INTERGENIC
SBS	Chr3	6745722	C-T	Hetero	INTERGENIC
SBS	Chr3	19820752	C-T	Hetero	INTERGENIC
SBS	Chr3	20156755	G-A	Hetero	INTERGENIC
SBS	Chr3	26300092	C-T	Hetero	INTERGENIC
SBS	Chr3	34007481	C-T	Hetero	INTERGENIC
SBS	Chr3	37261802	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	2966018	C-T	Hetero	INTERGENIC
SBS	Chr4	7910437	C-T	Homo	INTERGENIC
SBS	Chr4	10096653	T-A	Hetero	INTERGENIC
SBS	Chr4	18096423	C-T	Hetero	INTERGENIC
SBS	Chr4	22079278	T-G	Hetero	INTERGENIC
SBS	Chr4	22273608	T-C	Hetero	INTERGENIC
SBS	Chr4	25457568	A-G	Hetero	INTERGENIC
SBS	Chr4	34518796	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g287600
SBS	Chr5	26405619	C-G	Hetero	INTERGENIC
SBS	Chr6	5285619	G-A	Hetero	INTERGENIC
SBS	Chr6	6411255	C-T	Hetero	START_GAINED
SBS	Chr6	6522642	A-T	Hetero	INTERGENIC
SBS	Chr6	7479992	C-T	Hetero	INTERGENIC
SBS	Chr6	17647386	C-A	Hetero	INTERGENIC
SBS	Chr6	22111009	C-T	Hetero	INTERGENIC
SBS	Chr7	17904646	C-T	Hetero	INTERGENIC
SBS	Chr7	19506084	C-A	Hetero	INTERGENIC
SBS	Chr7	19753886	T-C	Hetero	INTERGENIC
SBS	Chr7	22973358	G-C	Hetero	INTERGENIC
SBS	Chr7	24841372	C-A	Hetero	INTERGENIC
SBS	Chr7	27501024	A-G	Hetero	INTERGENIC
SBS	Chr7	28095973	A-T	Hetero	INTERGENIC
SBS	Chr8	5914302	T-A	Hetero	INTRON
SBS	Chr8	12292124	A-G	Homo	INTERGENIC
SBS	Chr9	10618229	T-A	Hetero	INTERGENIC
SBS	Chr9	14023762	G-T	Hetero	INTRON
SBS	Chr10	5497708	C-T	Hetero	INTERGENIC
SBS	Chr10	7851147	C-T	Hetero	INTERGENIC
SBS	Chr10	12777071	G-A	Hetero	INTERGENIC
SBS	Chr10	13781751	A-G	Hetero	UTR_3_PRIME
SBS	Chr10	17229900	A-T	Homo	INTERGENIC
SBS	Chr11	9358494	T-A	Hetero	INTERGENIC
SBS	Chr11	11245459	C-G	Hetero	INTERGENIC
SBS	Chr11	11475215	T-C	Hetero	INTERGENIC
SBS	Chr11	18868459	T-C	Hetero	INTERGENIC
SBS	Chr11	21924295	A-G	Hetero	INTERGENIC
SBS	Chr11	23414490	C-T	Homo	INTERGENIC
SBS	Chr11	24112517	T-A	Hetero	INTERGENIC
SBS	Chr11	27501014	G-A	Hetero	INTERGENIC
SBS	Chr12	1118569	T-C	Homo	INTERGENIC
SBS	Chr12	18867926	C-A	Hetero	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC
SBS	Chr12	23529355	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	797382	797401	19
Deletion	Chr5	2782232	2782249	17
Deletion	Chr11	3752325	3752332	7	OsKitaake11g052300
Deletion	Chr2	6338067	6338069	2
Deletion	Chr6	7260001	7366000	105999	22
Deletion	Chr6	7589001	7634000	44999	3
Deletion	Chr12	10445590	10445605	15
Deletion	Chr10	10484387	10484389	2
Deletion	Chr2	11008029	11008033	4
Deletion	Chr11	11088001	11120000	31999	2
Deletion	Chr12	13108001	13108018	17
Deletion	Chr10	15954704	15954707	3
Deletion	Chr11	16735145	16735148	3
Deletion	Chr4	17555384	17555385	1
Deletion	Chr11	18604425	18604441	16
Deletion	Chr10	22194458	22194461	3	OsKitaake10g181000
Deletion	Chr4	22927962	22927963	1
Deletion	Chr4	24408722	24408724	2
Deletion	Chr8	28372810	28372812	2
Deletion	Chr1	29180569	29180571	2
Deletion	Chr1	39075365	39075379	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9492122	9531265	OsKitaake12g092000
Inversion	Chr12	9492123	9531267	OsKitaake12g092000
Inversion	Chr6	9637371	9638244	OsKitaake06g113400
Inversion	Chr6	9637505	9638244	OsKitaake06g113400
Inversion	Chr7	10313705	10577780

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes