Search Kitaake

Mutant Information

Mutant Name	FN2697-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2697-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2610739 G-A Hetero INTERGENIC
SBS Chr1 7240874 G-A Hetero INTERGENIC
SBS Chr1 13372404 C-T Homo INTERGENIC
SBS Chr1 18799546 C-T Hetero INTERGENIC
SBS Chr1 33981448 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g349000
SBS Chr2 21399089 T-A Homo INTERGENIC
SBS Chr2 27029223 C-T Hetero INTRON
SBS Chr3 5362173 A-G Hetero INTERGENIC
SBS Chr3 13457678 C-T Hetero INTERGENIC
SBS Chr4 15647789 T-A Hetero INTERGENIC
SBS Chr4 17217552 G-A Hetero INTERGENIC
SBS Chr4 29566284 T-A Homo INTERGENIC
SBS Chr5 19842273 C-A Homo INTERGENIC
SBS Chr5 22729982 T-C Homo INTERGENIC
SBS Chr6 8635174 G-T Hetero INTERGENIC
SBS Chr6 9642613 G-A Hetero INTRON
SBS Chr6 13003653 T-A Homo INTERGENIC
SBS Chr6 29774534 A-G Homo INTERGENIC
SBS Chr7 8636556 T-A Homo INTERGENIC
SBS Chr7 10778307 T-C Hetero INTERGENIC
SBS Chr7 12100797 G-A Hetero INTERGENIC
SBS Chr7 16446238 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g135300
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr8 19192036 A-G Homo INTERGENIC
SBS Chr8 27912766 T-A Hetero INTRON
SBS Chr9 8250066 T-A Hetero INTERGENIC
SBS Chr9 11528825 A-G Hetero INTERGENIC
SBS Chr9 14752141 G-A Hetero INTERGENIC
SBS Chr9 19562751 G-T Hetero INTRON
SBS Chr9 21464493 C-A Hetero INTERGENIC
SBS Chr10 5095978 C-G Hetero INTERGENIC
SBS Chr11 5130591 G-A Hetero INTERGENIC
SBS Chr11 19600960 T-C Hetero INTERGENIC
SBS Chr11 20456590 C-T Hetero INTERGENIC
SBS Chr11 20555667 G-A Hetero INTRON
SBS Chr11 20738234 T-A Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 225735 225737 2
Deletion Chr9 2088163 2088167 4
Deletion Chr7 3018915 3018919 4
Deletion Chr8 3788124 3788127 3
Deletion Chr5 7889738 7889743 5
Deletion Chr4 7947290 7947312 22
Deletion Chr1 14561229 14561230 1 OsKitaake01g165300
Deletion Chr12 20212756 20212768 12
Deletion Chr2 21365954 21365962 8
Deletion Chr2 23179969 23179982 13
Deletion Chr1 25435001 25541000 105999 12
Deletion Chr8 25504442 25504443 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 451033 451037 3
Insertion Chr3 24198261 24198263 1
Insertion Chr5 27907452 27907454 1
Insertion Chr11 2933278 2933292 13
Insertion Chr11 26140610 26140614 3
Insertion Chr3 9084393 9084398 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11964864 12543477 OsKitaake01g146800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 20714121 Chr1 11965325 OsKitaake01g146800
Translocation Chr10 20714123 Chr1 12543478

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2610739	G-A	Hetero	INTERGENIC
SBS	Chr1	7240874	G-A	Hetero	INTERGENIC
SBS	Chr1	13372404	C-T	Homo	INTERGENIC
SBS	Chr1	18799546	C-T	Hetero	INTERGENIC
SBS	Chr1	33981448	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g349000
SBS	Chr2	21399089	T-A	Homo	INTERGENIC
SBS	Chr2	27029223	C-T	Hetero	INTRON
SBS	Chr3	5362173	A-G	Hetero	INTERGENIC
SBS	Chr3	13457678	C-T	Hetero	INTERGENIC
SBS	Chr4	15647789	T-A	Hetero	INTERGENIC
SBS	Chr4	17217552	G-A	Hetero	INTERGENIC
SBS	Chr4	29566284	T-A	Homo	INTERGENIC
SBS	Chr5	19842273	C-A	Homo	INTERGENIC
SBS	Chr5	22729982	T-C	Homo	INTERGENIC
SBS	Chr6	8635174	G-T	Hetero	INTERGENIC
SBS	Chr6	9642613	G-A	Hetero	INTRON
SBS	Chr6	13003653	T-A	Homo	INTERGENIC
SBS	Chr6	29774534	A-G	Homo	INTERGENIC
SBS	Chr7	8636556	T-A	Homo	INTERGENIC
SBS	Chr7	10778307	T-C	Hetero	INTERGENIC
SBS	Chr7	12100797	G-A	Hetero	INTERGENIC
SBS	Chr7	16446238	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g135300
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr8	19192036	A-G	Homo	INTERGENIC
SBS	Chr8	27912766	T-A	Hetero	INTRON
SBS	Chr9	8250066	T-A	Hetero	INTERGENIC
SBS	Chr9	11528825	A-G	Hetero	INTERGENIC
SBS	Chr9	14752141	G-A	Hetero	INTERGENIC
SBS	Chr9	19562751	G-T	Hetero	INTRON
SBS	Chr9	21464493	C-A	Hetero	INTERGENIC
SBS	Chr10	5095978	C-G	Hetero	INTERGENIC
SBS	Chr11	5130591	G-A	Hetero	INTERGENIC
SBS	Chr11	19600960	T-C	Hetero	INTERGENIC
SBS	Chr11	20456590	C-T	Hetero	INTERGENIC
SBS	Chr11	20555667	G-A	Hetero	INTRON
SBS	Chr11	20738234	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	225735	225737	2
Deletion	Chr9	2088163	2088167	4
Deletion	Chr7	3018915	3018919	4
Deletion	Chr8	3788124	3788127	3
Deletion	Chr5	7889738	7889743	5
Deletion	Chr4	7947290	7947312	22
Deletion	Chr1	14561229	14561230	1	OsKitaake01g165300
Deletion	Chr12	20212756	20212768	12
Deletion	Chr2	21365954	21365962	8
Deletion	Chr2	23179969	23179982	13
Deletion	Chr1	25435001	25541000	105999	12
Deletion	Chr8	25504442	25504443	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11964864	12543477	OsKitaake01g146800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes