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Mutant Information

Mutant Name	FN2698-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2698-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 59

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18234281 A-T Homo INTERGENIC
SBS Chr1 33513241 C-T Homo INTERGENIC
SBS Chr1 33707151 T-C Homo INTERGENIC
SBS Chr2 3652809 G-A Homo INTERGENIC
SBS Chr2 10958646 T-G Hetero INTERGENIC
SBS Chr2 27121899 T-C Hetero INTERGENIC
SBS Chr2 28395505 C-A Homo INTERGENIC
SBS Chr3 6615210 A-G Hetero INTERGENIC
SBS Chr3 8753723 G-A Hetero INTERGENIC
SBS Chr3 8753724 A-T Hetero INTERGENIC
SBS Chr3 9741191 C-T Hetero INTERGENIC
SBS Chr3 17498419 A-G Hetero UTR_3_PRIME
SBS Chr3 33266027 G-A Hetero INTERGENIC
SBS Chr4 2370891 G-T Hetero INTERGENIC
SBS Chr4 4235814 C-T Hetero INTERGENIC
SBS Chr4 5574054 C-G Hetero INTERGENIC
SBS Chr4 10833979 C-A Hetero INTERGENIC
SBS Chr4 14460419 A-G Hetero INTERGENIC
SBS Chr4 16690933 G-A Hetero INTERGENIC
SBS Chr4 27700507 A-G Hetero INTERGENIC
SBS Chr4 30009080 T-C Homo INTERGENIC
SBS Chr5 2150659 T-A Hetero INTERGENIC
SBS Chr5 2173791 T-A Hetero INTERGENIC
SBS Chr5 19151497 C-T Hetero INTERGENIC
SBS Chr5 19928085 G-A Hetero INTERGENIC
SBS Chr5 23212300 C-T Hetero INTRON
SBS Chr5 25409868 T-A Hetero INTERGENIC
SBS Chr5 26354791 A-T Hetero INTRON
SBS Chr5 26354792 G-A Hetero INTRON
SBS Chr6 11493485 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g126800
SBS Chr6 17303598 A-T Hetero INTERGENIC
SBS Chr6 26793946 A-T Hetero INTRON
SBS Chr7 2648355 T-C Hetero INTERGENIC
SBS Chr7 4195309 G-A Hetero INTERGENIC
SBS Chr7 5069334 T-C Hetero INTERGENIC
SBS Chr7 12074106 C-T Hetero INTRON
SBS Chr7 26813245 G-T Hetero INTERGENIC
SBS Chr8 3356258 C-T Hetero INTRON
SBS Chr8 4167429 T-C Hetero UTR_3_PRIME
SBS Chr8 6759129 T-A Hetero INTERGENIC
SBS Chr8 11295261 G-A Homo INTERGENIC
SBS Chr8 20128338 G-T Hetero INTERGENIC
SBS Chr9 3438035 G-A Hetero INTERGENIC
SBS Chr9 6282382 A-C Hetero INTERGENIC
SBS Chr9 9894053 A-G Hetero INTERGENIC
SBS Chr9 12283466 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g080200
SBS Chr9 15843191 A-G Hetero INTERGENIC
SBS Chr9 21443658 G-T Hetero INTERGENIC
SBS Chr9 21739705 C-A Hetero INTRON
SBS Chr10 4817116 G-A Hetero INTERGENIC
SBS Chr10 8752947 C-T Hetero INTERGENIC
SBS Chr10 15191966 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g096500
SBS Chr11 2905126 T-A Hetero INTERGENIC
SBS Chr11 9581444 T-G Hetero INTERGENIC
SBS Chr11 12965584 G-C Homo INTERGENIC
SBS Chr11 19049928 C-G Hetero INTERGENIC
SBS Chr11 28395463 C-T Homo SYNONYMOUS_CODING
SBS Chr12 10220832 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 13955576 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 379435 379449 14
Deletion Chr3 1121816 1121835 19
Deletion Chr8 1755059 1755079 20
Deletion Chr5 2154074 2154075 1
Deletion Chr5 2255540 2255555 15
Deletion Chr5 2775704 2775721 17
Deletion Chr6 5788472 5788473 1
Deletion Chr4 5924441 5924444 3
Deletion Chr1 7071334 7071349 15
Deletion Chr7 8407281 8407283 2
Deletion Chr8 9608006 9608007 1
Deletion Chr12 9727001 9752000 24999
Deletion Chr3 10238655 10238660 5
Deletion Chr2 11657441 11657447 6
Deletion Chr10 12821654 12821671 17
Deletion Chr7 13026753 13026754 1
Deletion Chr5 14354213 14354214 1
Deletion Chr1 16219355 16219364 9
Deletion Chr3 17792821 17792830 9
Deletion Chr6 20322667 20322668 1
Deletion Chr2 24328697 24328710 13
Deletion Chr6 24712991 24712993 2
Deletion Chr3 25425698 25425700 2
Deletion Chr1 29200216 29200217 1
Deletion Chr1 29427008 29427010 2
Deletion Chr3 30831180 30831204 24
Deletion Chr1 40285552 40285576 24
Deletion Chr1 40370025 40370030 5

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6209644 6209647 2
Insertion Chr3 17490053 17490056 2
Insertion Chr4 5901750 5901754 3
Insertion Chr5 5949950 5949953 2
Insertion Chr6 27598472 27598475 2
Insertion Chr6 28309214 28309217 2
Insertion Chr8 553839 553842 2
Insertion Chr12 6311507 6311510 2
Insertion Chr12 24724356 24724359 2
Insertion Chr4 4771841 4771843 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 816069 Chr2 4093087 OsKitaake02g057650

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18234281	A-T	Homo	INTERGENIC
SBS	Chr1	33513241	C-T	Homo	INTERGENIC
SBS	Chr1	33707151	T-C	Homo	INTERGENIC
SBS	Chr2	3652809	G-A	Homo	INTERGENIC
SBS	Chr2	10958646	T-G	Hetero	INTERGENIC
SBS	Chr2	27121899	T-C	Hetero	INTERGENIC
SBS	Chr2	28395505	C-A	Homo	INTERGENIC
SBS	Chr3	6615210	A-G	Hetero	INTERGENIC
SBS	Chr3	8753723	G-A	Hetero	INTERGENIC
SBS	Chr3	8753724	A-T	Hetero	INTERGENIC
SBS	Chr3	9741191	C-T	Hetero	INTERGENIC
SBS	Chr3	17498419	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	33266027	G-A	Hetero	INTERGENIC
SBS	Chr4	2370891	G-T	Hetero	INTERGENIC
SBS	Chr4	4235814	C-T	Hetero	INTERGENIC
SBS	Chr4	5574054	C-G	Hetero	INTERGENIC
SBS	Chr4	10833979	C-A	Hetero	INTERGENIC
SBS	Chr4	14460419	A-G	Hetero	INTERGENIC
SBS	Chr4	16690933	G-A	Hetero	INTERGENIC
SBS	Chr4	27700507	A-G	Hetero	INTERGENIC
SBS	Chr4	30009080	T-C	Homo	INTERGENIC
SBS	Chr5	2150659	T-A	Hetero	INTERGENIC
SBS	Chr5	2173791	T-A	Hetero	INTERGENIC
SBS	Chr5	19151497	C-T	Hetero	INTERGENIC
SBS	Chr5	19928085	G-A	Hetero	INTERGENIC
SBS	Chr5	23212300	C-T	Hetero	INTRON
SBS	Chr5	25409868	T-A	Hetero	INTERGENIC
SBS	Chr5	26354791	A-T	Hetero	INTRON
SBS	Chr5	26354792	G-A	Hetero	INTRON
SBS	Chr6	11493485	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g126800
SBS	Chr6	17303598	A-T	Hetero	INTERGENIC
SBS	Chr6	26793946	A-T	Hetero	INTRON
SBS	Chr7	2648355	T-C	Hetero	INTERGENIC
SBS	Chr7	4195309	G-A	Hetero	INTERGENIC
SBS	Chr7	5069334	T-C	Hetero	INTERGENIC
SBS	Chr7	12074106	C-T	Hetero	INTRON
SBS	Chr7	26813245	G-T	Hetero	INTERGENIC
SBS	Chr8	3356258	C-T	Hetero	INTRON
SBS	Chr8	4167429	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	6759129	T-A	Hetero	INTERGENIC
SBS	Chr8	11295261	G-A	Homo	INTERGENIC
SBS	Chr8	20128338	G-T	Hetero	INTERGENIC
SBS	Chr9	3438035	G-A	Hetero	INTERGENIC
SBS	Chr9	6282382	A-C	Hetero	INTERGENIC
SBS	Chr9	9894053	A-G	Hetero	INTERGENIC
SBS	Chr9	12283466	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g080200
SBS	Chr9	15843191	A-G	Hetero	INTERGENIC
SBS	Chr9	21443658	G-T	Hetero	INTERGENIC
SBS	Chr9	21739705	C-A	Hetero	INTRON
SBS	Chr10	4817116	G-A	Hetero	INTERGENIC
SBS	Chr10	8752947	C-T	Hetero	INTERGENIC
SBS	Chr10	15191966	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g096500
SBS	Chr11	2905126	T-A	Hetero	INTERGENIC
SBS	Chr11	9581444	T-G	Hetero	INTERGENIC
SBS	Chr11	12965584	G-C	Homo	INTERGENIC
SBS	Chr11	19049928	C-G	Hetero	INTERGENIC
SBS	Chr11	28395463	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	10220832	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	13955576	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	379435	379449	14
Deletion	Chr3	1121816	1121835	19
Deletion	Chr8	1755059	1755079	20
Deletion	Chr5	2154074	2154075	1
Deletion	Chr5	2255540	2255555	15
Deletion	Chr5	2775704	2775721	17
Deletion	Chr6	5788472	5788473	1
Deletion	Chr4	5924441	5924444	3
Deletion	Chr1	7071334	7071349	15
Deletion	Chr7	8407281	8407283	2
Deletion	Chr8	9608006	9608007	1
Deletion	Chr12	9727001	9752000	24999
Deletion	Chr3	10238655	10238660	5
Deletion	Chr2	11657441	11657447	6
Deletion	Chr10	12821654	12821671	17
Deletion	Chr7	13026753	13026754	1
Deletion	Chr5	14354213	14354214	1
Deletion	Chr1	16219355	16219364	9
Deletion	Chr3	17792821	17792830	9
Deletion	Chr6	20322667	20322668	1
Deletion	Chr2	24328697	24328710	13
Deletion	Chr6	24712991	24712993	2
Deletion	Chr3	25425698	25425700	2
Deletion	Chr1	29200216	29200217	1
Deletion	Chr1	29427008	29427010	2
Deletion	Chr3	30831180	30831204	24
Deletion	Chr1	40285552	40285576	24
Deletion	Chr1	40370025	40370030	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	816069	Chr2	4093087	OsKitaake02g057650

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes