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Mutant Information

Mutant Name	FN2701-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2701-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16128688 A-C Hetero INTERGENIC
SBS Chr1 26645871 G-T Hetero UTR_3_PRIME
SBS Chr1 27044779 G-A Hetero INTRON
SBS Chr2 9729816 A-C Homo INTERGENIC
SBS Chr2 12362734 C-T Hetero INTERGENIC
SBS Chr2 12543748 C-T Hetero INTRON
SBS Chr2 22996449 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g224400
SBS Chr2 27091328 T-C Hetero INTERGENIC
SBS Chr2 30466044 A-C Hetero INTERGENIC
SBS Chr2 35304640 G-A Hetero INTERGENIC
SBS Chr3 211257 A-T Hetero INTERGENIC
SBS Chr3 5943234 T-A Hetero INTRON
SBS Chr3 6725008 C-T Hetero INTERGENIC
SBS Chr3 10041645 C-T Hetero INTERGENIC
SBS Chr3 17711283 G-C Hetero INTERGENIC
SBS Chr3 29606341 G-T Hetero INTERGENIC
SBS Chr3 33927940 G-A Hetero INTERGENIC
SBS Chr4 2397971 C-A Hetero INTERGENIC
SBS Chr4 4969465 T-G Hetero INTRON
SBS Chr4 5235937 G-A Hetero INTERGENIC
SBS Chr4 21828017 G-A Hetero INTERGENIC
SBS Chr4 23663682 C-T Homo INTERGENIC
SBS Chr4 26375840 G-T Homo INTERGENIC
SBS Chr4 35566454 G-T Hetero INTERGENIC
SBS Chr5 7254953 G-A Hetero INTERGENIC
SBS Chr5 12856493 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g099101
SBS Chr5 13022380 A-T Hetero INTERGENIC
SBS Chr5 24977866 C-T Hetero INTERGENIC
SBS Chr5 25125408 C-A Hetero INTERGENIC
SBS Chr6 5314337 C-G Hetero INTERGENIC
SBS Chr6 8107234 T-A Hetero INTERGENIC
SBS Chr6 8792578 C-A Hetero INTERGENIC
SBS Chr6 17655424 C-T Homo INTERGENIC
SBS Chr6 18904453 A-G Hetero INTERGENIC
SBS Chr6 26097997 G-A Hetero INTERGENIC
SBS Chr6 29057156 G-T Hetero INTERGENIC
SBS Chr7 5338593 C-T Homo INTERGENIC
SBS Chr7 25179245 T-A Homo UTR_3_PRIME
SBS Chr8 2734731 G-C Hetero INTERGENIC
SBS Chr8 7446440 A-T Hetero INTERGENIC
SBS Chr8 14196800 G-A Hetero INTERGENIC
SBS Chr8 16999830 G-A Hetero INTERGENIC
SBS Chr8 17868025 C-T Hetero INTERGENIC
SBS Chr8 17868026 C-T Hetero INTERGENIC
SBS Chr8 27651244 A-T Hetero INTERGENIC
SBS Chr8 28696525 T-C Hetero INTRON
SBS Chr9 5053861 T-A Homo INTERGENIC
SBS Chr9 7265533 T-C Hetero INTERGENIC
SBS Chr10 4855237 C-T Hetero INTERGENIC
SBS Chr10 15948586 A-G Hetero INTERGENIC
SBS Chr10 17600753 G-A Hetero UTR_5_PRIME
SBS Chr11 6336750 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g075500
SBS Chr11 6336751 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g075500
SBS Chr11 13630160 G-C Homo INTERGENIC
SBS Chr11 15429076 G-A Hetero INTERGENIC
SBS Chr11 15852832 A-G Hetero INTRON
SBS Chr11 16460518 T-A Homo INTRON
SBS Chr11 16460519 G-T Homo INTRON
SBS Chr11 18454289 C-G Hetero INTERGENIC
SBS Chr11 28218850 T-C Hetero INTERGENIC
SBS Chr12 1507251 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 6710538 T-C Hetero INTERGENIC
SBS Chr12 19853732 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63633 63634 1
Deletion Chr7 2610243 2610247 4
Deletion Chr4 5336001 5609000 272999 16
Deletion Chr7 5533921 5533922 1
Deletion Chr2 6042875 6042881 6
Deletion Chr11 16179869 16179889 20 OsKitaake11g129200
Deletion Chr12 24058068 24058073 5
Deletion Chr11 24337001 24360000 22999 OsKitaake11g195700
Deletion Chr11 24430571 24430573 2
Deletion Chr3 27289338 27289341 3 OsKitaake03g281100
Deletion Chr2 36585352 36585357 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 17217418 17217421 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 782776 Chr2 24392039
Translocation Chr11 785715 Chr4 5600553 OsKitaake11g010000
Translocation Chr4 5600178 Chr2 24392050
Translocation Chr7 21863972 Chr4 20746218

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16128688	A-C	Hetero	INTERGENIC
SBS	Chr1	26645871	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	27044779	G-A	Hetero	INTRON
SBS	Chr2	9729816	A-C	Homo	INTERGENIC
SBS	Chr2	12362734	C-T	Hetero	INTERGENIC
SBS	Chr2	12543748	C-T	Hetero	INTRON
SBS	Chr2	22996449	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g224400
SBS	Chr2	27091328	T-C	Hetero	INTERGENIC
SBS	Chr2	30466044	A-C	Hetero	INTERGENIC
SBS	Chr2	35304640	G-A	Hetero	INTERGENIC
SBS	Chr3	211257	A-T	Hetero	INTERGENIC
SBS	Chr3	5943234	T-A	Hetero	INTRON
SBS	Chr3	6725008	C-T	Hetero	INTERGENIC
SBS	Chr3	10041645	C-T	Hetero	INTERGENIC
SBS	Chr3	17711283	G-C	Hetero	INTERGENIC
SBS	Chr3	29606341	G-T	Hetero	INTERGENIC
SBS	Chr3	33927940	G-A	Hetero	INTERGENIC
SBS	Chr4	2397971	C-A	Hetero	INTERGENIC
SBS	Chr4	4969465	T-G	Hetero	INTRON
SBS	Chr4	5235937	G-A	Hetero	INTERGENIC
SBS	Chr4	21828017	G-A	Hetero	INTERGENIC
SBS	Chr4	23663682	C-T	Homo	INTERGENIC
SBS	Chr4	26375840	G-T	Homo	INTERGENIC
SBS	Chr4	35566454	G-T	Hetero	INTERGENIC
SBS	Chr5	7254953	G-A	Hetero	INTERGENIC
SBS	Chr5	12856493	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g099101
SBS	Chr5	13022380	A-T	Hetero	INTERGENIC
SBS	Chr5	24977866	C-T	Hetero	INTERGENIC
SBS	Chr5	25125408	C-A	Hetero	INTERGENIC
SBS	Chr6	5314337	C-G	Hetero	INTERGENIC
SBS	Chr6	8107234	T-A	Hetero	INTERGENIC
SBS	Chr6	8792578	C-A	Hetero	INTERGENIC
SBS	Chr6	17655424	C-T	Homo	INTERGENIC
SBS	Chr6	18904453	A-G	Hetero	INTERGENIC
SBS	Chr6	26097997	G-A	Hetero	INTERGENIC
SBS	Chr6	29057156	G-T	Hetero	INTERGENIC
SBS	Chr7	5338593	C-T	Homo	INTERGENIC
SBS	Chr7	25179245	T-A	Homo	UTR_3_PRIME
SBS	Chr8	2734731	G-C	Hetero	INTERGENIC
SBS	Chr8	7446440	A-T	Hetero	INTERGENIC
SBS	Chr8	14196800	G-A	Hetero	INTERGENIC
SBS	Chr8	16999830	G-A	Hetero	INTERGENIC
SBS	Chr8	17868025	C-T	Hetero	INTERGENIC
SBS	Chr8	17868026	C-T	Hetero	INTERGENIC
SBS	Chr8	27651244	A-T	Hetero	INTERGENIC
SBS	Chr8	28696525	T-C	Hetero	INTRON
SBS	Chr9	5053861	T-A	Homo	INTERGENIC
SBS	Chr9	7265533	T-C	Hetero	INTERGENIC
SBS	Chr10	4855237	C-T	Hetero	INTERGENIC
SBS	Chr10	15948586	A-G	Hetero	INTERGENIC
SBS	Chr10	17600753	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	6336750	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g075500
SBS	Chr11	6336751	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g075500
SBS	Chr11	13630160	G-C	Homo	INTERGENIC
SBS	Chr11	15429076	G-A	Hetero	INTERGENIC
SBS	Chr11	15852832	A-G	Hetero	INTRON
SBS	Chr11	16460518	T-A	Homo	INTRON
SBS	Chr11	16460519	G-T	Homo	INTRON
SBS	Chr11	18454289	C-G	Hetero	INTERGENIC
SBS	Chr11	28218850	T-C	Hetero	INTERGENIC
SBS	Chr12	1507251	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	6710538	T-C	Hetero	INTERGENIC
SBS	Chr12	19853732	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63633	63634	1
Deletion	Chr7	2610243	2610247	4
Deletion	Chr4	5336001	5609000	272999	16
Deletion	Chr7	5533921	5533922	1
Deletion	Chr2	6042875	6042881	6
Deletion	Chr11	16179869	16179889	20	OsKitaake11g129200
Deletion	Chr12	24058068	24058073	5
Deletion	Chr11	24337001	24360000	22999	OsKitaake11g195700
Deletion	Chr11	24430571	24430573	2
Deletion	Chr3	27289338	27289341	3	OsKitaake03g281100
Deletion	Chr2	36585352	36585357	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	782776	Chr2	24392039
Translocation	Chr11	785715	Chr4	5600553	OsKitaake11g010000
Translocation	Chr4	5600178	Chr2	24392050
Translocation	Chr7	21863972	Chr4	20746218

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes