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Mutant Information

Mutant Name	FN2702-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2702-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17291507 T-C Hetero INTERGENIC
SBS Chr1 17663969 C-T Hetero INTERGENIC
SBS Chr1 24009535 T-C Hetero INTERGENIC
SBS Chr1 24279636 A-G Hetero INTERGENIC
SBS Chr1 32791191 G-A Hetero INTERGENIC
SBS Chr1 33609726 C-T Hetero INTRON
SBS Chr2 4449100 T-A Hetero INTERGENIC
SBS Chr2 4449102 C-T Hetero INTERGENIC
SBS Chr2 4882614 C-G Hetero UTR_3_PRIME
SBS Chr2 22486518 T-C Hetero INTERGENIC
SBS Chr2 24930750 C-A Hetero INTERGENIC
SBS Chr2 26238876 A-T Hetero INTERGENIC
SBS Chr2 29600990 C-T Homo SYNONYMOUS_CODING
SBS Chr3 598362 G-A Hetero INTERGENIC
SBS Chr3 16872474 G-A Hetero INTERGENIC
SBS Chr3 28077080 A-G Hetero INTRON
SBS Chr4 8537845 C-T Hetero INTERGENIC
SBS Chr4 28870529 C-A Hetero INTERGENIC
SBS Chr4 36000711 A-G Hetero INTERGENIC
SBS Chr4 36796052 T-A Hetero INTRON
SBS Chr5 965339 T-C Hetero INTERGENIC
SBS Chr5 4913932 A-T Hetero INTERGENIC
SBS Chr5 9020466 C-T Hetero INTERGENIC
SBS Chr5 12329750 G-A Hetero INTERGENIC
SBS Chr6 16542888 G-A Hetero INTERGENIC
SBS Chr7 9694204 G-A Hetero INTERGENIC
SBS Chr7 16870969 C-T Homo INTERGENIC
SBS Chr7 21012907 G-T Hetero STOP_GAINED OsKitaake07g173300
SBS Chr7 24182437 C-T Hetero INTERGENIC
SBS Chr7 24182439 T-G Hetero INTERGENIC
SBS Chr7 26584770 T-A Hetero INTERGENIC
SBS Chr8 23674810 G-A Hetero START_GAINED
SBS Chr9 15725977 T-C Homo INTERGENIC
SBS Chr10 13585540 G-T Hetero INTERGENIC
SBS Chr11 3853442 A-T Hetero INTERGENIC
SBS Chr11 7147923 C-T Hetero INTRON
SBS Chr11 11416399 A-G Hetero INTRON
SBS Chr11 17405741 C-T Hetero INTERGENIC
SBS Chr11 20305130 A-T Homo INTERGENIC
SBS Chr11 25553386 T-A Homo INTERGENIC
SBS Chr12 7668385 G-A Hetero INTERGENIC
SBS Chr12 9538333 C-T Hetero INTERGENIC
SBS Chr12 10771602 C-G Hetero INTERGENIC
SBS Chr12 13931119 A-G Hetero INTERGENIC
SBS Chr12 26975979 A-G Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1640613 1640618 5
Deletion Chr10 4282580 4282581 1
Deletion Chr7 11984659 11984660 1
Deletion Chr8 12398998 12398999 1
Deletion Chr8 12845098 12845099 1
Deletion Chr7 17357516 17357525 9
Deletion Chr1 26698001 26706000 7999
Deletion Chr1 38738346 38738396 50

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4457418 4457421 2
Insertion Chr1 32299490 32299493 2
Insertion Chr5 17365612 17365617 4
Insertion Chr6 23922859 23922862 2
Insertion Chr11 2165595 2165600 4
Insertion Chr11 2466313 2466316 2
Insertion Chr11 5345278 5345280 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 26715002 27061214
Inversion Chr1 26715024 27061224

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7555743 Chr5 5012706 OsKitaake09g042900
Translocation Chr9 7556065 Chr5 5012706 OsKitaake09g042900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17291507	T-C	Hetero	INTERGENIC
SBS	Chr1	17663969	C-T	Hetero	INTERGENIC
SBS	Chr1	24009535	T-C	Hetero	INTERGENIC
SBS	Chr1	24279636	A-G	Hetero	INTERGENIC
SBS	Chr1	32791191	G-A	Hetero	INTERGENIC
SBS	Chr1	33609726	C-T	Hetero	INTRON
SBS	Chr2	4449100	T-A	Hetero	INTERGENIC
SBS	Chr2	4449102	C-T	Hetero	INTERGENIC
SBS	Chr2	4882614	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	22486518	T-C	Hetero	INTERGENIC
SBS	Chr2	24930750	C-A	Hetero	INTERGENIC
SBS	Chr2	26238876	A-T	Hetero	INTERGENIC
SBS	Chr2	29600990	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	598362	G-A	Hetero	INTERGENIC
SBS	Chr3	16872474	G-A	Hetero	INTERGENIC
SBS	Chr3	28077080	A-G	Hetero	INTRON
SBS	Chr4	8537845	C-T	Hetero	INTERGENIC
SBS	Chr4	28870529	C-A	Hetero	INTERGENIC
SBS	Chr4	36000711	A-G	Hetero	INTERGENIC
SBS	Chr4	36796052	T-A	Hetero	INTRON
SBS	Chr5	965339	T-C	Hetero	INTERGENIC
SBS	Chr5	4913932	A-T	Hetero	INTERGENIC
SBS	Chr5	9020466	C-T	Hetero	INTERGENIC
SBS	Chr5	12329750	G-A	Hetero	INTERGENIC
SBS	Chr6	16542888	G-A	Hetero	INTERGENIC
SBS	Chr7	9694204	G-A	Hetero	INTERGENIC
SBS	Chr7	16870969	C-T	Homo	INTERGENIC
SBS	Chr7	21012907	G-T	Hetero	STOP_GAINED	OsKitaake07g173300
SBS	Chr7	24182437	C-T	Hetero	INTERGENIC
SBS	Chr7	24182439	T-G	Hetero	INTERGENIC
SBS	Chr7	26584770	T-A	Hetero	INTERGENIC
SBS	Chr8	23674810	G-A	Hetero	START_GAINED
SBS	Chr9	15725977	T-C	Homo	INTERGENIC
SBS	Chr10	13585540	G-T	Hetero	INTERGENIC
SBS	Chr11	3853442	A-T	Hetero	INTERGENIC
SBS	Chr11	7147923	C-T	Hetero	INTRON
SBS	Chr11	11416399	A-G	Hetero	INTRON
SBS	Chr11	17405741	C-T	Hetero	INTERGENIC
SBS	Chr11	20305130	A-T	Homo	INTERGENIC
SBS	Chr11	25553386	T-A	Homo	INTERGENIC
SBS	Chr12	7668385	G-A	Hetero	INTERGENIC
SBS	Chr12	9538333	C-T	Hetero	INTERGENIC
SBS	Chr12	10771602	C-G	Hetero	INTERGENIC
SBS	Chr12	13931119	A-G	Hetero	INTERGENIC
SBS	Chr12	26975979	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1640613	1640618	5
Deletion	Chr10	4282580	4282581	1
Deletion	Chr7	11984659	11984660	1
Deletion	Chr8	12398998	12398999	1
Deletion	Chr8	12845098	12845099	1
Deletion	Chr7	17357516	17357525	9
Deletion	Chr1	26698001	26706000	7999
Deletion	Chr1	38738346	38738396	50

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	26715002	27061214
Inversion	Chr1	26715024	27061224

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes