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| Mutant Information |
|---|
| Mutant Name | FN2703-S-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2703-S-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21315720 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 7472955 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 24165233 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 33133441 | G-A | Homo | INTRON | |
| SBS | Chr3 | 19771648 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22075541 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22075542 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 36212071 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 25648397 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g224700 |
| SBS | Chr6 | 235839 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 4128486 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 6068171 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7078648 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23369766 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6587721 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13187460 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26531842 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27177057 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 2199945 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13737259 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 13803219 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g093300 |
| SBS | Chr9 | 14452532 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15087773 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22678479 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 707727 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7451885 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 13204242 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1805292 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g027000 |
| SBS | Chr12 | 9754905 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10290335 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13666980 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22617968 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 23858213 | G-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3681859 | 3681860 | 1 | |
| Deletion | Chr11 | 7511304 | 7511308 | 4 | OsKitaake11g084600 |
| Deletion | Chr2 | 7685637 | 7685638 | 1 | OsKitaake02g100600 |
| Deletion | Chr2 | 8063699 | 8063700 | 1 | |
| Deletion | Chr1 | 8330922 | 8330932 | 10 | |
| Deletion | Chr2 | 10438001 | 10476000 | 37999 | 5 |
| Deletion | Chr9 | 12364531 | 12364533 | 2 | |
| Deletion | Chr4 | 13365767 | 13365770 | 3 | |
| Deletion | Chr11 | 14142092 | 14142099 | 7 | |
| Deletion | Chr3 | 14363541 | 14363552 | 11 | |
| Deletion | Chr9 | 22436291 | 22436305 | 14 | |
| Deletion | Chr4 | 24509974 | 24509976 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 22015723 | 22015729 | 5 | |
| Insertion | Chr7 | 3097985 | 3097988 | 2 | |
| Insertion | Chr7 | 24308583 | 24308587 | 3 | |
| Insertion | Chr12 | 18976512 | 18976515 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 7402400 | 7916163 | OsKitaake06g095900 |
| Inversion | Chr6 | 7402412 | 7916174 | OsKitaake06g095900 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 634113 | Chr2 | 10439816 | OsKitaake06g006100 |
| Translocation | Chr6 | 25863102 | Chr2 | 5698158 | 2 |
| Translocation | Chr6 | 25863418 | Chr2 | 5698130 | OsKitaake02g078800 |