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Mutant Information

Mutant Name	FN2704-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2704-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 109

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 824007 T-A Hetero INTERGENIC
SBS Chr1 24206781 G-A Homo INTERGENIC
SBS Chr1 39836203 C-T Hetero INTERGENIC
SBS Chr1 41126103 T-C Hetero INTERGENIC
SBS Chr2 6645591 T-C Homo INTERGENIC
SBS Chr2 13066476 G-A Hetero UTR_5_PRIME
SBS Chr2 13066477 C-T Hetero UTR_5_PRIME
SBS Chr2 16561175 C-T Hetero INTERGENIC
SBS Chr3 7075918 C-T Hetero INTERGENIC
SBS Chr3 14791740 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g192900
SBS Chr3 19169498 C-T Hetero INTERGENIC
SBS Chr3 19950055 A-G Hetero INTERGENIC
SBS Chr3 24467932 C-T Hetero INTERGENIC
SBS Chr3 27768906 C-T Homo INTERGENIC
SBS Chr4 487078 T-C Hetero INTERGENIC
SBS Chr4 1233548 C-T Hetero INTERGENIC
SBS Chr4 2374243 G-A Hetero INTERGENIC
SBS Chr4 2842930 G-A Hetero INTERGENIC
SBS Chr4 13392540 C-T Homo INTERGENIC
SBS Chr4 13651375 G-A Hetero INTERGENIC
SBS Chr4 23647773 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g149300
SBS Chr5 6101032 T-A Hetero INTERGENIC
SBS Chr5 6192164 G-A Hetero INTERGENIC
SBS Chr5 8593328 C-T Hetero INTERGENIC
SBS Chr5 9027718 G-A Hetero INTERGENIC
SBS Chr5 9995569 T-A Hetero INTERGENIC
SBS Chr5 14088783 G-A Hetero INTERGENIC
SBS Chr5 16334878 T-C Hetero INTRON
SBS Chr5 16355914 G-A Hetero UTR_5_PRIME
SBS Chr5 16355919 G-A Hetero START_GAINED
SBS Chr5 16355923 G-A Hetero UTR_5_PRIME
SBS Chr5 17549124 C-T Hetero INTERGENIC
SBS Chr6 15473237 C-T Hetero INTERGENIC
SBS Chr6 21130927 T-A Homo INTERGENIC
SBS Chr6 24226964 A-T Hetero INTERGENIC
SBS Chr8 3130614 C-T Hetero INTRON
SBS Chr8 4626098 T-A Hetero INTERGENIC
SBS Chr8 17603236 G-A Hetero INTRON
SBS Chr8 21996542 T-C Hetero INTERGENIC
SBS Chr8 28592978 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g245100
SBS Chr8 29186280 T-A Hetero INTERGENIC
SBS Chr9 808606 T-C Hetero INTERGENIC
SBS Chr9 21565286 C-T Hetero INTERGENIC
SBS Chr10 13314321 T-A Homo INTERGENIC
SBS Chr10 16499240 C-T Hetero INTERGENIC
SBS Chr11 6303459 A-G Hetero INTERGENIC
SBS Chr11 14561436 C-T Hetero INTRON
SBS Chr12 10250964 C-T Hetero INTERGENIC
SBS Chr12 12277664 C-T Hetero INTERGENIC
SBS Chr12 19334123 T-A Hetero INTERGENIC
SBS Chr12 21024689 C-A Hetero INTERGENIC
SBS Chr1 824007 T-A Hetero INTERGENIC
SBS Chr1 24206781 G-A Homo INTERGENIC
SBS Chr1 25530894 A-T Hetero INTERGENIC
SBS Chr1 35366173 C-A Hetero INTERGENIC
SBS Chr1 39523672 C-A Hetero INTERGENIC
SBS Chr1 39836203 C-T Hetero INTERGENIC
SBS Chr1 41896018 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g458800
SBS Chr2 6645591 T-C Homo INTERGENIC
SBS Chr2 13066476 G-A Hetero UTR_5_PRIME
SBS Chr2 13066477 C-T Hetero UTR_5_PRIME
SBS Chr2 16561175 C-T Hetero INTERGENIC
SBS Chr2 22055418 C-T Homo INTERGENIC
SBS Chr3 6195487 A-G Hetero INTERGENIC
SBS Chr3 7075918 C-T Hetero INTERGENIC
SBS Chr3 19950055 A-G Hetero INTERGENIC
SBS Chr3 24467932 C-T Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 27768906 C-T Homo INTERGENIC
SBS Chr4 487078 T-C Hetero INTERGENIC
SBS Chr4 1233548 C-T Hetero INTERGENIC
SBS Chr4 2374243 G-A Hetero INTERGENIC
SBS Chr4 2842930 G-A Hetero INTERGENIC
SBS Chr4 13392540 C-T Homo INTERGENIC
SBS Chr4 23647773 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g149300
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr4 28510535 G-T Hetero INTERGENIC
SBS Chr5 6192164 G-A Hetero INTERGENIC
SBS Chr5 9027718 G-A Hetero INTERGENIC
SBS Chr5 9089871 C-G Hetero INTERGENIC
SBS Chr5 14803405 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g112900
SBS Chr5 16334878 T-C Hetero INTRON
SBS Chr5 16355914 G-A Hetero UTR_5_PRIME
SBS Chr5 16355919 G-A Hetero START_GAINED
SBS Chr5 16355923 G-A Hetero UTR_5_PRIME
SBS Chr5 25324378 C-T Hetero INTERGENIC
SBS Chr6 21130927 T-A Homo INTERGENIC
SBS Chr6 24226964 A-T Hetero INTERGENIC
SBS Chr7 1780245 A-G Hetero INTRON
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 19037345 C-T Hetero INTERGENIC
SBS Chr7 24657757 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g219600
SBS Chr8 3130614 C-T Hetero INTRON
SBS Chr8 5339363 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g058100
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr8 17603236 G-A Hetero INTRON
SBS Chr8 28592978 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g245100
SBS Chr9 808606 T-C Hetero INTERGENIC
SBS Chr9 14056535 C-T Hetero INTERGENIC
SBS Chr9 21565286 C-T Hetero INTERGENIC
SBS Chr10 13314321 T-A Homo INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 6303459 A-G Hetero INTERGENIC
SBS Chr11 12085928 G-T Hetero INTERGENIC
SBS Chr12 6613915 T-C Hetero INTERGENIC
SBS Chr12 16760316 C-T Hetero INTERGENIC
SBS Chr12 19334123 T-A Hetero INTERGENIC
SBS Chr12 20793214 T-C Hetero INTERGENIC

Deletions: 41

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 909001 915000 5999 2
Deletion Chr9 2190846 2190875 29
Deletion Chr6 3747655 3747661 6 2
Deletion Chr12 3805879 3805884 5
Deletion Chr6 4400001 4414000 13999 2
Deletion Chr6 4403001 4414000 10999 OsKitaake06g060600
Deletion Chr5 4783287 4783293 6
Deletion Chr11 5663922 5663923 1
Deletion Chr9 6011075 6011076 1
Deletion Chr4 6939192 6939195 3
Deletion Chr5 7108001 7677000 568999 52
Deletion Chr5 7120001 7676000 555999 52
Deletion Chr8 7710786 7710814 28 OsKitaake08g071000
Deletion Chr3 10544296 10544303 7 2
Deletion Chr11 12142547 12142549 2
Deletion Chr11 13302736 13302738 2
Deletion Chr11 14285111 14285122 11
Deletion Chr9 15319822 15319830 8 2
Deletion Chr4 15950586 15950589 3 2
Deletion Chr8 16166274 16166278 4 2
Deletion Chr5 16277001 16296000 18999 2
Deletion Chr5 16278001 16296000 17999 2
Deletion Chr11 16815485 16815496 11
Deletion Chr11 16936374 16936375 1
Deletion Chr11 18164115 18164120 5
Deletion Chr8 18533589 18533590 1
Deletion Chr5 18755197 18755222 25
Deletion Chr6 19955001 19959000 3999 2
Deletion Chr9 20476169 20476180 11
Deletion Chr10 20497324 20497325 1
Deletion Chr9 20993874 20993889 15
Deletion Chr12 21248801 21248810 9 2
Deletion Chr11 22836227 22836253 26
Deletion Chr11 23309287 23309305 18
Deletion Chr11 24443391 24443393 2
Deletion Chr6 25418885 25418886 1 2
Deletion Chr7 25961004 25961005 1 2
Deletion Chr11 28965443 28965445 2
Deletion Chr1 36515941 36515942 1 2
Deletion Chr1 38409851 38409853 2
Deletion Chr1 43644421 43644427 6

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16051564 16051567 2
Insertion Chr6 30902691 30902694 2
Insertion Chr10 1809893 1809896 2
Insertion Chr10 2629791 2629794 2
Insertion Chr10 5135594 5135597 2
Insertion Chr1 4060072 4060075 2
Insertion Chr1 24474321 24474325 3
Insertion Chr8 10248589 10248592 2
Insertion Chr11 23529392 23529395 2
Insertion Chr12 17221126 17221129 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 16277372 16323963 OsKitaake05g124800
Inversion Chr5 16297270 16324051 2
Inversion Chr3 35205320 35613926

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	824007	T-A	Hetero	INTERGENIC
SBS	Chr1	24206781	G-A	Homo	INTERGENIC
SBS	Chr1	39836203	C-T	Hetero	INTERGENIC
SBS	Chr1	41126103	T-C	Hetero	INTERGENIC
SBS	Chr2	6645591	T-C	Homo	INTERGENIC
SBS	Chr2	13066476	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	13066477	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	16561175	C-T	Hetero	INTERGENIC
SBS	Chr3	7075918	C-T	Hetero	INTERGENIC
SBS	Chr3	14791740	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g192900
SBS	Chr3	19169498	C-T	Hetero	INTERGENIC
SBS	Chr3	19950055	A-G	Hetero	INTERGENIC
SBS	Chr3	24467932	C-T	Hetero	INTERGENIC
SBS	Chr3	27768906	C-T	Homo	INTERGENIC
SBS	Chr4	487078	T-C	Hetero	INTERGENIC
SBS	Chr4	1233548	C-T	Hetero	INTERGENIC
SBS	Chr4	2374243	G-A	Hetero	INTERGENIC
SBS	Chr4	2842930	G-A	Hetero	INTERGENIC
SBS	Chr4	13392540	C-T	Homo	INTERGENIC
SBS	Chr4	13651375	G-A	Hetero	INTERGENIC
SBS	Chr4	23647773	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g149300
SBS	Chr5	6101032	T-A	Hetero	INTERGENIC
SBS	Chr5	6192164	G-A	Hetero	INTERGENIC
SBS	Chr5	8593328	C-T	Hetero	INTERGENIC
SBS	Chr5	9027718	G-A	Hetero	INTERGENIC
SBS	Chr5	9995569	T-A	Hetero	INTERGENIC
SBS	Chr5	14088783	G-A	Hetero	INTERGENIC
SBS	Chr5	16334878	T-C	Hetero	INTRON
SBS	Chr5	16355914	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	16355919	G-A	Hetero	START_GAINED
SBS	Chr5	16355923	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	17549124	C-T	Hetero	INTERGENIC
SBS	Chr6	15473237	C-T	Hetero	INTERGENIC
SBS	Chr6	21130927	T-A	Homo	INTERGENIC
SBS	Chr6	24226964	A-T	Hetero	INTERGENIC
SBS	Chr8	3130614	C-T	Hetero	INTRON
SBS	Chr8	4626098	T-A	Hetero	INTERGENIC
SBS	Chr8	17603236	G-A	Hetero	INTRON
SBS	Chr8	21996542	T-C	Hetero	INTERGENIC
SBS	Chr8	28592978	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g245100
SBS	Chr8	29186280	T-A	Hetero	INTERGENIC
SBS	Chr9	808606	T-C	Hetero	INTERGENIC
SBS	Chr9	21565286	C-T	Hetero	INTERGENIC
SBS	Chr10	13314321	T-A	Homo	INTERGENIC
SBS	Chr10	16499240	C-T	Hetero	INTERGENIC
SBS	Chr11	6303459	A-G	Hetero	INTERGENIC
SBS	Chr11	14561436	C-T	Hetero	INTRON
SBS	Chr12	10250964	C-T	Hetero	INTERGENIC
SBS	Chr12	12277664	C-T	Hetero	INTERGENIC
SBS	Chr12	19334123	T-A	Hetero	INTERGENIC
SBS	Chr12	21024689	C-A	Hetero	INTERGENIC
SBS	Chr1	824007	T-A	Hetero	INTERGENIC
SBS	Chr1	24206781	G-A	Homo	INTERGENIC
SBS	Chr1	25530894	A-T	Hetero	INTERGENIC
SBS	Chr1	35366173	C-A	Hetero	INTERGENIC
SBS	Chr1	39523672	C-A	Hetero	INTERGENIC
SBS	Chr1	39836203	C-T	Hetero	INTERGENIC
SBS	Chr1	41896018	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g458800
SBS	Chr2	6645591	T-C	Homo	INTERGENIC
SBS	Chr2	13066476	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	13066477	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	16561175	C-T	Hetero	INTERGENIC
SBS	Chr2	22055418	C-T	Homo	INTERGENIC
SBS	Chr3	6195487	A-G	Hetero	INTERGENIC
SBS	Chr3	7075918	C-T	Hetero	INTERGENIC
SBS	Chr3	19950055	A-G	Hetero	INTERGENIC
SBS	Chr3	24467932	C-T	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	27768906	C-T	Homo	INTERGENIC
SBS	Chr4	487078	T-C	Hetero	INTERGENIC
SBS	Chr4	1233548	C-T	Hetero	INTERGENIC
SBS	Chr4	2374243	G-A	Hetero	INTERGENIC
SBS	Chr4	2842930	G-A	Hetero	INTERGENIC
SBS	Chr4	13392540	C-T	Homo	INTERGENIC
SBS	Chr4	23647773	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g149300
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr4	28510535	G-T	Hetero	INTERGENIC
SBS	Chr5	6192164	G-A	Hetero	INTERGENIC
SBS	Chr5	9027718	G-A	Hetero	INTERGENIC
SBS	Chr5	9089871	C-G	Hetero	INTERGENIC
SBS	Chr5	14803405	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g112900
SBS	Chr5	16334878	T-C	Hetero	INTRON
SBS	Chr5	16355914	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	16355919	G-A	Hetero	START_GAINED
SBS	Chr5	16355923	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	25324378	C-T	Hetero	INTERGENIC
SBS	Chr6	21130927	T-A	Homo	INTERGENIC
SBS	Chr6	24226964	A-T	Hetero	INTERGENIC
SBS	Chr7	1780245	A-G	Hetero	INTRON
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	19037345	C-T	Hetero	INTERGENIC
SBS	Chr7	24657757	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g219600
SBS	Chr8	3130614	C-T	Hetero	INTRON
SBS	Chr8	5339363	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g058100
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr8	17603236	G-A	Hetero	INTRON
SBS	Chr8	28592978	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g245100
SBS	Chr9	808606	T-C	Hetero	INTERGENIC
SBS	Chr9	14056535	C-T	Hetero	INTERGENIC
SBS	Chr9	21565286	C-T	Hetero	INTERGENIC
SBS	Chr10	13314321	T-A	Homo	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	6303459	A-G	Hetero	INTERGENIC
SBS	Chr11	12085928	G-T	Hetero	INTERGENIC
SBS	Chr12	6613915	T-C	Hetero	INTERGENIC
SBS	Chr12	16760316	C-T	Hetero	INTERGENIC
SBS	Chr12	19334123	T-A	Hetero	INTERGENIC
SBS	Chr12	20793214	T-C	Hetero	INTERGENIC

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes