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Mutant Information

Mutant Name	FN2705-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2705-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40369911 G-A Hetero INTERGENIC
SBS Chr1 40884531 A-T Hetero INTERGENIC
SBS Chr1 40884676 G-T Hetero INTERGENIC
SBS Chr2 6468619 T-C Hetero INTERGENIC
SBS Chr2 7847429 C-A Hetero INTERGENIC
SBS Chr2 9761127 C-T Hetero INTERGENIC
SBS Chr2 9761128 C-T Hetero INTERGENIC
SBS Chr2 32184121 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g328900
SBS Chr3 4671675 G-A Homo SYNONYMOUS_CODING
SBS Chr3 12672932 T-A Homo INTRON
SBS Chr3 13606413 G-A Hetero INTERGENIC
SBS Chr3 17764496 G-A Hetero INTERGENIC
SBS Chr3 28770341 C-T Hetero INTERGENIC
SBS Chr4 2983917 G-A Hetero INTERGENIC
SBS Chr4 3182208 G-A Hetero INTRON
SBS Chr4 11474377 T-C Hetero INTERGENIC
SBS Chr4 15343325 T-G Hetero INTERGENIC
SBS Chr4 20396531 G-T Homo INTERGENIC
SBS Chr5 26122215 C-T Hetero INTERGENIC
SBS Chr6 5883126 G-A Hetero INTERGENIC
SBS Chr6 18154832 A-G Hetero INTERGENIC
SBS Chr7 5864358 C-A Hetero SYNONYMOUS_CODING
SBS Chr7 20581464 C-A Homo INTERGENIC
SBS Chr7 20583437 T-G Homo INTERGENIC
SBS Chr7 20583448 T-G Homo INTERGENIC
SBS Chr8 12422599 G-T Hetero INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr9 8858291 G-A Hetero INTERGENIC
SBS Chr10 407425 A-T Hetero INTERGENIC
SBS Chr10 8730060 T-G Homo INTERGENIC
SBS Chr10 23636952 T-C Hetero INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr12 6281779 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1488359 1488363 4
Deletion Chr7 3117294 3117419 125
Deletion Chr3 4089589 4089590 1
Deletion Chr6 4982314 4982326 12
Deletion Chr4 7040885 7040886 1
Deletion Chr11 11777697 11777701 4
Deletion Chr11 12147595 12147597 2
Deletion Chr4 18718887 18718889 2
Deletion Chr7 20102787 20102797 10
Deletion Chr11 20421729 20421730 1
Deletion Chr1 41038003 41038013 10
Deletion Chr1 43806057 43806058 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22931278 22931281 2
Insertion Chr9 16141056 16141059 2
Insertion Chr11 20352654 20352657 2
Insertion Chr12 25366617 25366620 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 36529552 37070434
Inversion Chr1 36529556 37070436

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 22116998 Chr1 32770286 OsKitaake01g332700
Translocation Chr4 22117872 Chr1 32770257 OsKitaake01g332700
Translocation Chr4 22441630 Chr1 26634811 OsKitaake04g131900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40369911	G-A	Hetero	INTERGENIC
SBS	Chr1	40884531	A-T	Hetero	INTERGENIC
SBS	Chr1	40884676	G-T	Hetero	INTERGENIC
SBS	Chr2	6468619	T-C	Hetero	INTERGENIC
SBS	Chr2	7847429	C-A	Hetero	INTERGENIC
SBS	Chr2	9761127	C-T	Hetero	INTERGENIC
SBS	Chr2	9761128	C-T	Hetero	INTERGENIC
SBS	Chr2	32184121	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g328900
SBS	Chr3	4671675	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	12672932	T-A	Homo	INTRON
SBS	Chr3	13606413	G-A	Hetero	INTERGENIC
SBS	Chr3	17764496	G-A	Hetero	INTERGENIC
SBS	Chr3	28770341	C-T	Hetero	INTERGENIC
SBS	Chr4	2983917	G-A	Hetero	INTERGENIC
SBS	Chr4	3182208	G-A	Hetero	INTRON
SBS	Chr4	11474377	T-C	Hetero	INTERGENIC
SBS	Chr4	15343325	T-G	Hetero	INTERGENIC
SBS	Chr4	20396531	G-T	Homo	INTERGENIC
SBS	Chr5	26122215	C-T	Hetero	INTERGENIC
SBS	Chr6	5883126	G-A	Hetero	INTERGENIC
SBS	Chr6	18154832	A-G	Hetero	INTERGENIC
SBS	Chr7	5864358	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	20581464	C-A	Homo	INTERGENIC
SBS	Chr7	20583437	T-G	Homo	INTERGENIC
SBS	Chr7	20583448	T-G	Homo	INTERGENIC
SBS	Chr8	12422599	G-T	Hetero	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr9	8858291	G-A	Hetero	INTERGENIC
SBS	Chr10	407425	A-T	Hetero	INTERGENIC
SBS	Chr10	8730060	T-G	Homo	INTERGENIC
SBS	Chr10	23636952	T-C	Hetero	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr12	6281779	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1488359	1488363	4
Deletion	Chr7	3117294	3117419	125
Deletion	Chr3	4089589	4089590	1
Deletion	Chr6	4982314	4982326	12
Deletion	Chr4	7040885	7040886	1
Deletion	Chr11	11777697	11777701	4
Deletion	Chr11	12147595	12147597	2
Deletion	Chr4	18718887	18718889	2
Deletion	Chr7	20102787	20102797	10
Deletion	Chr11	20421729	20421730	1
Deletion	Chr1	41038003	41038013	10
Deletion	Chr1	43806057	43806058	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	36529552	37070434
Inversion	Chr1	36529556	37070436

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes