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Mutant Information

Mutant Name	FN2706-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2706-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7195099 G-A Hetero INTERGENIC
SBS Chr1 11702191 T-A Hetero INTERGENIC
SBS Chr1 16292471 A-G Hetero INTERGENIC
SBS Chr1 18137092 A-T Hetero INTERGENIC
SBS Chr1 18137093 C-A Hetero INTERGENIC
SBS Chr1 23189537 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g221400
SBS Chr1 29697299 G-A Homo INTERGENIC
SBS Chr2 7346591 G-A Hetero INTERGENIC
SBS Chr2 8966294 C-A Hetero INTERGENIC
SBS Chr2 9471116 G-A Hetero INTERGENIC
SBS Chr2 22460927 A-C Hetero INTERGENIC
SBS Chr2 23907485 C-T Homo INTERGENIC
SBS Chr2 24068683 G-A Homo INTRON
SBS Chr3 2534075 T-C Homo INTRON
SBS Chr3 4015088 C-T Hetero INTERGENIC
SBS Chr3 4930293 A-C Hetero INTERGENIC
SBS Chr3 10599017 T-G Hetero UTR_3_PRIME
SBS Chr3 30058352 T-C Hetero INTERGENIC
SBS Chr3 35594012 C-A Hetero INTERGENIC
SBS Chr3 35594013 G-T Hetero INTERGENIC
SBS Chr3 36379804 C-T Hetero INTRON
SBS Chr4 7207780 G-A Hetero INTERGENIC
SBS Chr4 11601365 G-A Hetero INTERGENIC
SBS Chr4 14550027 C-T Hetero INTERGENIC
SBS Chr4 15189813 C-T Hetero INTERGENIC
SBS Chr5 6354972 C-T Homo INTERGENIC
SBS Chr5 6354973 G-T Homo INTERGENIC
SBS Chr5 6354974 G-T Homo INTERGENIC
SBS Chr5 9032813 C-T Homo INTERGENIC
SBS Chr5 17874140 G-T Hetero INTERGENIC
SBS Chr5 20195835 C-G Hetero INTERGENIC
SBS Chr6 4036858 A-T Homo INTERGENIC
SBS Chr6 7426377 C-T Hetero INTERGENIC
SBS Chr6 14708438 G-A Homo INTERGENIC
SBS Chr6 29842933 A-T Hetero INTERGENIC
SBS Chr7 11744570 C-A Hetero INTERGENIC
SBS Chr7 18787205 A-T Hetero INTERGENIC
SBS Chr7 19765713 G-C Hetero INTERGENIC
SBS Chr8 5870635 T-A Hetero INTERGENIC
SBS Chr8 9109052 G-A Hetero INTERGENIC
SBS Chr8 12266542 A-T Hetero INTERGENIC
SBS Chr8 22851908 C-G Homo INTERGENIC
SBS Chr8 25207647 T-G Homo INTERGENIC
SBS Chr8 25615296 G-T Hetero STOP_GAINED OsKitaake08g202600
SBS Chr9 2141623 G-A Hetero INTERGENIC
SBS Chr9 2360213 G-A Hetero INTERGENIC
SBS Chr10 4399858 C-T Hetero INTERGENIC
SBS Chr10 20363462 C-T Homo INTERGENIC
SBS Chr11 6035592 A-G Homo INTERGENIC
SBS Chr11 10272373 C-G Hetero INTERGENIC
SBS Chr11 21627832 A-T Hetero STOP_GAINED OsKitaake11g171100
SBS Chr11 25513226 G-A Hetero INTERGENIC
SBS Chr11 27789766 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1718130 1718132 2
Deletion Chr7 4365971 4365985 14
Deletion Chr4 4862001 4869000 6999
Deletion Chr11 5018873 5018909 36
Deletion Chr7 11464443 11464448 5 OsKitaake07g106900
Deletion Chr4 14115963 14115973 10
Deletion Chr3 16316698 16316699 1
Deletion Chr12 17601760 17601763 3
Deletion Chr12 17632191 17632198 7
Deletion Chr6 17691185 17691194 9
Deletion Chr5 19214526 19214529 3 OsKitaake05g150500
Deletion Chr5 27633645 27633655 10
Deletion Chr1 31396435 31396444 9

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16528056 16528059 2
Insertion Chr3 23821793 23821796 2
Insertion Chr4 4898736 4898739 2
Insertion Chr4 17583756 17583759 2
Insertion Chr5 21774467 21774471 3
Insertion Chr6 26228257 26228260 2
Insertion Chr7 4976579 4976587 7
Insertion Chr11 25036464 25036468 3
Insertion Chr12 23958505 23958508 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12693662 Chr2 32212156 OsKitaake02g329300
Translocation Chr8 12694102 Chr2 32212136 OsKitaake02g329300
Translocation Chr7 13546077 Chr5 28203782 OsKitaake07g118900
Translocation Chr7 13546079 Chr1 2632771 OsKitaake07g118900
Translocation Chr9 17847822 Chr5 28211035 2
Translocation Chr5 28600241 Chr3 12013756
Translocation Chr5 28600537 Chr4 12197697

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7195099	G-A	Hetero	INTERGENIC
SBS	Chr1	11702191	T-A	Hetero	INTERGENIC
SBS	Chr1	16292471	A-G	Hetero	INTERGENIC
SBS	Chr1	18137092	A-T	Hetero	INTERGENIC
SBS	Chr1	18137093	C-A	Hetero	INTERGENIC
SBS	Chr1	23189537	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g221400
SBS	Chr1	29697299	G-A	Homo	INTERGENIC
SBS	Chr2	7346591	G-A	Hetero	INTERGENIC
SBS	Chr2	8966294	C-A	Hetero	INTERGENIC
SBS	Chr2	9471116	G-A	Hetero	INTERGENIC
SBS	Chr2	22460927	A-C	Hetero	INTERGENIC
SBS	Chr2	23907485	C-T	Homo	INTERGENIC
SBS	Chr2	24068683	G-A	Homo	INTRON
SBS	Chr3	2534075	T-C	Homo	INTRON
SBS	Chr3	4015088	C-T	Hetero	INTERGENIC
SBS	Chr3	4930293	A-C	Hetero	INTERGENIC
SBS	Chr3	10599017	T-G	Hetero	UTR_3_PRIME
SBS	Chr3	30058352	T-C	Hetero	INTERGENIC
SBS	Chr3	35594012	C-A	Hetero	INTERGENIC
SBS	Chr3	35594013	G-T	Hetero	INTERGENIC
SBS	Chr3	36379804	C-T	Hetero	INTRON
SBS	Chr4	7207780	G-A	Hetero	INTERGENIC
SBS	Chr4	11601365	G-A	Hetero	INTERGENIC
SBS	Chr4	14550027	C-T	Hetero	INTERGENIC
SBS	Chr4	15189813	C-T	Hetero	INTERGENIC
SBS	Chr5	6354972	C-T	Homo	INTERGENIC
SBS	Chr5	6354973	G-T	Homo	INTERGENIC
SBS	Chr5	6354974	G-T	Homo	INTERGENIC
SBS	Chr5	9032813	C-T	Homo	INTERGENIC
SBS	Chr5	17874140	G-T	Hetero	INTERGENIC
SBS	Chr5	20195835	C-G	Hetero	INTERGENIC
SBS	Chr6	4036858	A-T	Homo	INTERGENIC
SBS	Chr6	7426377	C-T	Hetero	INTERGENIC
SBS	Chr6	14708438	G-A	Homo	INTERGENIC
SBS	Chr6	29842933	A-T	Hetero	INTERGENIC
SBS	Chr7	11744570	C-A	Hetero	INTERGENIC
SBS	Chr7	18787205	A-T	Hetero	INTERGENIC
SBS	Chr7	19765713	G-C	Hetero	INTERGENIC
SBS	Chr8	5870635	T-A	Hetero	INTERGENIC
SBS	Chr8	9109052	G-A	Hetero	INTERGENIC
SBS	Chr8	12266542	A-T	Hetero	INTERGENIC
SBS	Chr8	22851908	C-G	Homo	INTERGENIC
SBS	Chr8	25207647	T-G	Homo	INTERGENIC
SBS	Chr8	25615296	G-T	Hetero	STOP_GAINED	OsKitaake08g202600
SBS	Chr9	2141623	G-A	Hetero	INTERGENIC
SBS	Chr9	2360213	G-A	Hetero	INTERGENIC
SBS	Chr10	4399858	C-T	Hetero	INTERGENIC
SBS	Chr10	20363462	C-T	Homo	INTERGENIC
SBS	Chr11	6035592	A-G	Homo	INTERGENIC
SBS	Chr11	10272373	C-G	Hetero	INTERGENIC
SBS	Chr11	21627832	A-T	Hetero	STOP_GAINED	OsKitaake11g171100
SBS	Chr11	25513226	G-A	Hetero	INTERGENIC
SBS	Chr11	27789766	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1718130	1718132	2
Deletion	Chr7	4365971	4365985	14
Deletion	Chr4	4862001	4869000	6999
Deletion	Chr11	5018873	5018909	36
Deletion	Chr7	11464443	11464448	5	OsKitaake07g106900
Deletion	Chr4	14115963	14115973	10
Deletion	Chr3	16316698	16316699	1
Deletion	Chr12	17601760	17601763	3
Deletion	Chr12	17632191	17632198	7
Deletion	Chr6	17691185	17691194	9
Deletion	Chr5	19214526	19214529	3	OsKitaake05g150500
Deletion	Chr5	27633645	27633655	10
Deletion	Chr1	31396435	31396444	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	12693662	Chr2	32212156	OsKitaake02g329300
Translocation	Chr8	12694102	Chr2	32212136	OsKitaake02g329300
Translocation	Chr7	13546077	Chr5	28203782	OsKitaake07g118900
Translocation	Chr7	13546079	Chr1	2632771	OsKitaake07g118900
Translocation	Chr9	17847822	Chr5	28211035	2
Translocation	Chr5	28600241	Chr3	12013756
Translocation	Chr5	28600537	Chr4	12197697

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes