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Mutant Information

Mutant Name	FN2707-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2707-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1006444 A-G Hetero INTRON
SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr1 30553797 T-C Homo INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 1954979 C-T Hetero INTERGENIC
SBS Chr2 3076405 A-T Hetero INTERGENIC
SBS Chr2 6756631 T-C Hetero INTERGENIC
SBS Chr2 9626966 C-T Hetero UTR_3_PRIME
SBS Chr2 14543343 T-C Hetero INTERGENIC
SBS Chr3 14868337 C-T Hetero INTERGENIC
SBS Chr3 23973000 T-C Hetero INTERGENIC
SBS Chr3 35063243 G-A Homo INTERGENIC
SBS Chr3 35900006 T-C Homo SPLICE_SITE_REGION
SBS Chr4 1538502 C-T Hetero INTERGENIC
SBS Chr4 4641622 G-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Hetero INTERGENIC
SBS Chr4 11971415 A-T Hetero INTRON
SBS Chr4 13979464 T-A Hetero INTRON
SBS Chr4 17430939 T-A Homo INTERGENIC
SBS Chr4 24262697 C-A Homo INTRON
SBS Chr6 8281002 A-G Hetero INTERGENIC
SBS Chr6 8561089 A-G Hetero INTERGENIC
SBS Chr6 11581331 G-C Hetero INTERGENIC
SBS Chr6 13288701 T-A Hetero INTERGENIC
SBS Chr6 18069988 C-T Hetero INTERGENIC
SBS Chr6 22450418 A-G Hetero INTERGENIC
SBS Chr7 8344951 C-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Hetero INTERGENIC
SBS Chr8 11314598 C-T Hetero INTERGENIC
SBS Chr8 17658102 G-A Hetero INTERGENIC
SBS Chr8 20601337 G-T Hetero INTERGENIC
SBS Chr9 4309061 A-T Homo INTERGENIC
SBS Chr9 7286035 T-C Hetero INTERGENIC
SBS Chr9 8346478 G-A Hetero INTERGENIC
SBS Chr9 17248584 A-G Hetero INTERGENIC
SBS Chr10 5813553 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 8131202 A-T Hetero INTERGENIC
SBS Chr10 12047540 C-T Hetero INTERGENIC
SBS Chr10 18877791 T-C Hetero INTERGENIC
SBS Chr11 5393840 C-T Hetero INTERGENIC
SBS Chr11 11616360 G-A Hetero INTERGENIC
SBS Chr11 13179727 C-T Hetero INTERGENIC
SBS Chr11 17253985 G-A Hetero INTERGENIC
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 20797970 C-A Hetero INTRON
SBS Chr12 25662680 A-G Hetero INTERGENIC
SBS Chr12 26596637 G-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2023182 2023183 1
Deletion Chr9 3318720 3318722 2
Deletion Chr11 17266732 17266733 1
Deletion Chr11 20247096 20247098 2
Deletion Chr4 20804112 20804114 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2837653 2837656 2
Insertion Chr7 5616591 5616595 3
Insertion Chr8 27499490 27499495 4
Insertion Chr11 22109945 22109950 4
Insertion Chr3 697741 697745 3
Insertion Chr5 12594783 12594785 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 27919612 27927426 OsKitaake03g288800
Inversion Chr3 27919642 27927428 OsKitaake03g288800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1006444	A-G	Hetero	INTRON
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr1	30553797	T-C	Homo	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	1954979	C-T	Hetero	INTERGENIC
SBS	Chr2	3076405	A-T	Hetero	INTERGENIC
SBS	Chr2	6756631	T-C	Hetero	INTERGENIC
SBS	Chr2	9626966	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	14543343	T-C	Hetero	INTERGENIC
SBS	Chr3	14868337	C-T	Hetero	INTERGENIC
SBS	Chr3	23973000	T-C	Hetero	INTERGENIC
SBS	Chr3	35063243	G-A	Homo	INTERGENIC
SBS	Chr3	35900006	T-C	Homo	SPLICE_SITE_REGION
SBS	Chr4	1538502	C-T	Hetero	INTERGENIC
SBS	Chr4	4641622	G-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Hetero	INTERGENIC
SBS	Chr4	11971415	A-T	Hetero	INTRON
SBS	Chr4	13979464	T-A	Hetero	INTRON
SBS	Chr4	17430939	T-A	Homo	INTERGENIC
SBS	Chr4	24262697	C-A	Homo	INTRON
SBS	Chr6	8281002	A-G	Hetero	INTERGENIC
SBS	Chr6	8561089	A-G	Hetero	INTERGENIC
SBS	Chr6	11581331	G-C	Hetero	INTERGENIC
SBS	Chr6	13288701	T-A	Hetero	INTERGENIC
SBS	Chr6	18069988	C-T	Hetero	INTERGENIC
SBS	Chr6	22450418	A-G	Hetero	INTERGENIC
SBS	Chr7	8344951	C-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Hetero	INTERGENIC
SBS	Chr8	11314598	C-T	Hetero	INTERGENIC
SBS	Chr8	17658102	G-A	Hetero	INTERGENIC
SBS	Chr8	20601337	G-T	Hetero	INTERGENIC
SBS	Chr9	4309061	A-T	Homo	INTERGENIC
SBS	Chr9	7286035	T-C	Hetero	INTERGENIC
SBS	Chr9	8346478	G-A	Hetero	INTERGENIC
SBS	Chr9	17248584	A-G	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	8131202	A-T	Hetero	INTERGENIC
SBS	Chr10	12047540	C-T	Hetero	INTERGENIC
SBS	Chr10	18877791	T-C	Hetero	INTERGENIC
SBS	Chr11	5393840	C-T	Hetero	INTERGENIC
SBS	Chr11	11616360	G-A	Hetero	INTERGENIC
SBS	Chr11	13179727	C-T	Hetero	INTERGENIC
SBS	Chr11	17253985	G-A	Hetero	INTERGENIC
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	20797970	C-A	Hetero	INTRON
SBS	Chr12	25662680	A-G	Hetero	INTERGENIC
SBS	Chr12	26596637	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2023182	2023183	1
Deletion	Chr9	3318720	3318722	2
Deletion	Chr11	17266732	17266733	1
Deletion	Chr11	20247096	20247098	2
Deletion	Chr4	20804112	20804114	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27919612	27927426	OsKitaake03g288800
Inversion	Chr3	27919642	27927428	OsKitaake03g288800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes