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Mutant Information

Mutant Name	FN2707-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2707-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26397219 G-A Homo INTERGENIC
SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr1 30553797 T-C Homo INTERGENIC
SBS Chr1 34073588 C-T Hetero INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 3076405 A-T Hetero INTERGENIC
SBS Chr2 14543343 T-C Hetero INTERGENIC
SBS Chr2 18819450 G-A Hetero INTERGENIC
SBS Chr2 24065549 C-T Hetero INTERGENIC
SBS Chr2 34707490 T-G Hetero INTRON
SBS Chr3 14868337 C-T Hetero INTERGENIC
SBS Chr3 16122252 G-A Hetero INTERGENIC
SBS Chr3 23973000 T-C Hetero INTERGENIC
SBS Chr3 35063243 G-A Homo INTERGENIC
SBS Chr3 35900006 T-C Homo SPLICE_SITE_REGION
SBS Chr4 1538502 C-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Hetero INTERGENIC
SBS Chr4 11971415 A-T Hetero INTRON
SBS Chr4 13979464 T-A Hetero INTRON
SBS Chr4 17430939 T-A Homo INTERGENIC
SBS Chr4 18663547 T-C Hetero INTERGENIC
SBS Chr4 24262697 C-A Homo INTRON
SBS Chr5 8920678 C-A Hetero INTERGENIC
SBS Chr5 20945991 G-T Hetero INTERGENIC
SBS Chr6 8281002 A-G Hetero INTERGENIC
SBS Chr6 8561089 A-G Hetero INTERGENIC
SBS Chr6 11581331 G-C Hetero INTERGENIC
SBS Chr6 13288701 T-A Hetero INTERGENIC
SBS Chr7 7919723 G-A Hetero INTERGENIC
SBS Chr7 8344951 C-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Hetero INTERGENIC
SBS Chr7 14476809 G-C Hetero INTERGENIC
SBS Chr7 14476810 G-C Hetero INTERGENIC
SBS Chr7 18398230 T-C Hetero INTERGENIC
SBS Chr7 29523941 A-G Hetero INTRON
SBS Chr8 17658102 G-A Hetero INTERGENIC
SBS Chr8 19652325 T-A Hetero INTERGENIC
SBS Chr8 20601337 G-T Hetero INTERGENIC
SBS Chr9 4309061 A-T Homo INTERGENIC
SBS Chr9 7299758 A-G Hetero INTERGENIC
SBS Chr9 8346478 G-A Hetero INTERGENIC
SBS Chr9 17248584 A-G Hetero INTERGENIC
SBS Chr10 5813553 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 12047540 C-T Hetero INTERGENIC
SBS Chr11 5393840 C-T Hetero INTERGENIC
SBS Chr11 15199492 G-A Hetero INTERGENIC
SBS Chr11 29077237 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g238300
SBS Chr12 8493162 G-T Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2023182 2023183 1
Deletion Chr9 3318720 3318722 2
Deletion Chr4 11945010 11945011 1
Deletion Chr7 19814079 19814081 2
Deletion Chr4 28316201 28316202 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2837653 2837656 2
Insertion Chr5 22809292 22809302 9
Insertion Chr6 7511517 7511519 1
Insertion Chr7 2644518 2644521 2
Insertion Chr7 5616591 5616595 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 27919612 27927426 OsKitaake03g288800
Inversion Chr3 27919642 27927428 OsKitaake03g288800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26397219	G-A	Homo	INTERGENIC
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr1	30553797	T-C	Homo	INTERGENIC
SBS	Chr1	34073588	C-T	Hetero	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	3076405	A-T	Hetero	INTERGENIC
SBS	Chr2	14543343	T-C	Hetero	INTERGENIC
SBS	Chr2	18819450	G-A	Hetero	INTERGENIC
SBS	Chr2	24065549	C-T	Hetero	INTERGENIC
SBS	Chr2	34707490	T-G	Hetero	INTRON
SBS	Chr3	14868337	C-T	Hetero	INTERGENIC
SBS	Chr3	16122252	G-A	Hetero	INTERGENIC
SBS	Chr3	23973000	T-C	Hetero	INTERGENIC
SBS	Chr3	35063243	G-A	Homo	INTERGENIC
SBS	Chr3	35900006	T-C	Homo	SPLICE_SITE_REGION
SBS	Chr4	1538502	C-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Hetero	INTERGENIC
SBS	Chr4	11971415	A-T	Hetero	INTRON
SBS	Chr4	13979464	T-A	Hetero	INTRON
SBS	Chr4	17430939	T-A	Homo	INTERGENIC
SBS	Chr4	18663547	T-C	Hetero	INTERGENIC
SBS	Chr4	24262697	C-A	Homo	INTRON
SBS	Chr5	8920678	C-A	Hetero	INTERGENIC
SBS	Chr5	20945991	G-T	Hetero	INTERGENIC
SBS	Chr6	8281002	A-G	Hetero	INTERGENIC
SBS	Chr6	8561089	A-G	Hetero	INTERGENIC
SBS	Chr6	11581331	G-C	Hetero	INTERGENIC
SBS	Chr6	13288701	T-A	Hetero	INTERGENIC
SBS	Chr7	7919723	G-A	Hetero	INTERGENIC
SBS	Chr7	8344951	C-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Hetero	INTERGENIC
SBS	Chr7	14476809	G-C	Hetero	INTERGENIC
SBS	Chr7	14476810	G-C	Hetero	INTERGENIC
SBS	Chr7	18398230	T-C	Hetero	INTERGENIC
SBS	Chr7	29523941	A-G	Hetero	INTRON
SBS	Chr8	17658102	G-A	Hetero	INTERGENIC
SBS	Chr8	19652325	T-A	Hetero	INTERGENIC
SBS	Chr8	20601337	G-T	Hetero	INTERGENIC
SBS	Chr9	4309061	A-T	Homo	INTERGENIC
SBS	Chr9	7299758	A-G	Hetero	INTERGENIC
SBS	Chr9	8346478	G-A	Hetero	INTERGENIC
SBS	Chr9	17248584	A-G	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	12047540	C-T	Hetero	INTERGENIC
SBS	Chr11	5393840	C-T	Hetero	INTERGENIC
SBS	Chr11	15199492	G-A	Hetero	INTERGENIC
SBS	Chr11	29077237	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g238300
SBS	Chr12	8493162	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2023182	2023183	1
Deletion	Chr9	3318720	3318722	2
Deletion	Chr4	11945010	11945011	1
Deletion	Chr7	19814079	19814081	2
Deletion	Chr4	28316201	28316202	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27919612	27927426	OsKitaake03g288800
Inversion	Chr3	27919642	27927428	OsKitaake03g288800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes