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Mutant Information

Mutant Name	FN2708-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2708-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 64

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10834674 G-A Hetero INTERGENIC
SBS Chr1 17477535 T-C Hetero INTERGENIC
SBS Chr1 26352110 A-G Hetero INTERGENIC
SBS Chr1 33569009 C-T Hetero INTERGENIC
SBS Chr1 44056547 A-T Homo INTERGENIC
SBS Chr2 4045625 G-T Homo UTR_5_PRIME
SBS Chr2 18283927 C-T Hetero INTERGENIC
SBS Chr2 28978754 C-G Homo INTERGENIC
SBS Chr3 8373698 C-T Hetero INTERGENIC
SBS Chr3 22219077 C-T Hetero INTERGENIC
SBS Chr3 25907087 G-C Hetero INTERGENIC
SBS Chr3 29369576 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 33061791 C-T Hetero UTR_5_PRIME
SBS Chr3 34706555 T-C Hetero INTRON
SBS Chr3 35578317 A-C Hetero UTR_3_PRIME
SBS Chr4 5178 G-A Hetero INTERGENIC
SBS Chr4 4077709 T-C Hetero INTERGENIC
SBS Chr4 6377851 T-C Hetero INTRON
SBS Chr4 6851184 C-T Hetero INTERGENIC
SBS Chr4 14672131 T-A Hetero INTRON
SBS Chr4 16442463 T-A Hetero INTERGENIC
SBS Chr4 17730784 C-T Hetero INTERGENIC
SBS Chr4 17855327 G-T Hetero INTERGENIC
SBS Chr4 33725286 C-T Hetero INTERGENIC
SBS Chr5 3788272 A-G Hetero INTERGENIC
SBS Chr5 6264080 A-G Hetero INTERGENIC
SBS Chr5 16402622 G-C Hetero INTERGENIC
SBS Chr5 19655908 T-C Hetero INTERGENIC
SBS Chr5 21745672 T-C Hetero INTERGENIC
SBS Chr6 3054788 C-T Hetero INTERGENIC
SBS Chr6 5420155 A-T Hetero INTRON
SBS Chr6 19357631 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g174200
SBS Chr6 23095387 G-A Hetero INTERGENIC
SBS Chr7 7811309 C-T Homo INTERGENIC
SBS Chr7 8054891 G-T Hetero INTERGENIC
SBS Chr7 11254764 T-A Hetero INTRON
SBS Chr7 24251592 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g215900
SBS Chr8 9275482 A-G Hetero INTERGENIC
SBS Chr8 10056517 G-T Hetero INTERGENIC
SBS Chr8 15418153 G-T Hetero INTERGENIC
SBS Chr8 17699830 G-A Hetero INTERGENIC
SBS Chr8 28062719 G-A Hetero INTERGENIC
SBS Chr9 2632177 A-G Homo INTERGENIC
SBS Chr9 4439241 T-C Hetero INTERGENIC
SBS Chr9 4489759 A-G Hetero INTERGENIC
SBS Chr9 12315253 T-A Hetero INTERGENIC
SBS Chr9 14811226 G-C Hetero INTERGENIC
SBS Chr10 4605086 A-G Hetero INTERGENIC
SBS Chr10 8169423 C-G Hetero INTERGENIC
SBS Chr10 9040532 G-A Hetero INTERGENIC
SBS Chr10 19738970 C-T Hetero INTERGENIC
SBS Chr11 2235027 T-A Homo INTERGENIC
SBS Chr11 3252864 A-G Hetero INTERGENIC
SBS Chr11 3646867 A-G Homo INTERGENIC
SBS Chr11 9698419 A-C Hetero SYNONYMOUS_CODING
SBS Chr11 20735560 G-A Hetero UTR_3_PRIME
SBS Chr11 22208384 C-T Hetero INTERGENIC
SBS Chr11 23790574 A-T Homo INTERGENIC
SBS Chr11 23790575 A-T Homo INTERGENIC
SBS Chr11 29304267 G-A Hetero INTERGENIC
SBS Chr12 4370212 G-A Hetero INTERGENIC
SBS Chr12 10381270 A-T Hetero INTRON
SBS Chr12 12134175 G-A Hetero INTERGENIC
SBS Chr12 16739691 G-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 533811 533812 1
Deletion Chr8 1608766 1608775 9 OsKitaake08g020200
Deletion Chr2 3713022 3713024 2
Deletion Chr12 5047753 5047754 1
Deletion Chr5 5848735 5848737 2
Deletion Chr3 8124360 8124368 8 OsKitaake03g112600
Deletion Chr3 10266529 10266531 2
Deletion Chr6 10462001 10471000 8999 OsKitaake06g117900
Deletion Chr3 10937964 10937967 3
Deletion Chr4 12280403 12280406 3
Deletion Chr12 15224992 15224993 1
Deletion Chr11 15443795 15443796 1
Deletion Chr4 18260312 18260314 2
Deletion Chr7 20575326 20575328 2
Deletion Chr10 21912572 21912575 3 OsKitaake10g176900
Deletion Chr11 29001352 29001356 4
Deletion Chr4 30895009 30895010 1

Insertions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1609839 1609842 2
Insertion Chr3 19122371 19122374 2
Insertion Chr3 31798915 31798918 2
Insertion Chr4 21176512 21176515 2
Insertion Chr5 2738300 2738303 2
Insertion Chr5 29314955 29314958 2
Insertion Chr7 14736625 14736629 3
Insertion Chr7 19536627 19536630 2
Insertion Chr9 3078804 3078809 4
Insertion Chr10 20246017 20246021 3
Insertion Chr12 14367404 14367407 2
Insertion Chr5 12527862 12527864 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3609135 3648994 OsKitaake11g049800
Inversion Chr10 6115430 6710844 OsKitaake10g042500
Inversion Chr4 16449357 17029234
Inversion Chr4 16449373 17029232

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 24021373 Chr3 24723443
Translocation Chr11 29117316 Chr3 24723111

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10834674	G-A	Hetero	INTERGENIC
SBS	Chr1	17477535	T-C	Hetero	INTERGENIC
SBS	Chr1	26352110	A-G	Hetero	INTERGENIC
SBS	Chr1	33569009	C-T	Hetero	INTERGENIC
SBS	Chr1	44056547	A-T	Homo	INTERGENIC
SBS	Chr2	4045625	G-T	Homo	UTR_5_PRIME
SBS	Chr2	18283927	C-T	Hetero	INTERGENIC
SBS	Chr2	28978754	C-G	Homo	INTERGENIC
SBS	Chr3	8373698	C-T	Hetero	INTERGENIC
SBS	Chr3	22219077	C-T	Hetero	INTERGENIC
SBS	Chr3	25907087	G-C	Hetero	INTERGENIC
SBS	Chr3	29369576	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	33061791	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	34706555	T-C	Hetero	INTRON
SBS	Chr3	35578317	A-C	Hetero	UTR_3_PRIME
SBS	Chr4	5178	G-A	Hetero	INTERGENIC
SBS	Chr4	4077709	T-C	Hetero	INTERGENIC
SBS	Chr4	6377851	T-C	Hetero	INTRON
SBS	Chr4	6851184	C-T	Hetero	INTERGENIC
SBS	Chr4	14672131	T-A	Hetero	INTRON
SBS	Chr4	16442463	T-A	Hetero	INTERGENIC
SBS	Chr4	17730784	C-T	Hetero	INTERGENIC
SBS	Chr4	17855327	G-T	Hetero	INTERGENIC
SBS	Chr4	33725286	C-T	Hetero	INTERGENIC
SBS	Chr5	3788272	A-G	Hetero	INTERGENIC
SBS	Chr5	6264080	A-G	Hetero	INTERGENIC
SBS	Chr5	16402622	G-C	Hetero	INTERGENIC
SBS	Chr5	19655908	T-C	Hetero	INTERGENIC
SBS	Chr5	21745672	T-C	Hetero	INTERGENIC
SBS	Chr6	3054788	C-T	Hetero	INTERGENIC
SBS	Chr6	5420155	A-T	Hetero	INTRON
SBS	Chr6	19357631	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g174200
SBS	Chr6	23095387	G-A	Hetero	INTERGENIC
SBS	Chr7	7811309	C-T	Homo	INTERGENIC
SBS	Chr7	8054891	G-T	Hetero	INTERGENIC
SBS	Chr7	11254764	T-A	Hetero	INTRON
SBS	Chr7	24251592	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g215900
SBS	Chr8	9275482	A-G	Hetero	INTERGENIC
SBS	Chr8	10056517	G-T	Hetero	INTERGENIC
SBS	Chr8	15418153	G-T	Hetero	INTERGENIC
SBS	Chr8	17699830	G-A	Hetero	INTERGENIC
SBS	Chr8	28062719	G-A	Hetero	INTERGENIC
SBS	Chr9	2632177	A-G	Homo	INTERGENIC
SBS	Chr9	4439241	T-C	Hetero	INTERGENIC
SBS	Chr9	4489759	A-G	Hetero	INTERGENIC
SBS	Chr9	12315253	T-A	Hetero	INTERGENIC
SBS	Chr9	14811226	G-C	Hetero	INTERGENIC
SBS	Chr10	4605086	A-G	Hetero	INTERGENIC
SBS	Chr10	8169423	C-G	Hetero	INTERGENIC
SBS	Chr10	9040532	G-A	Hetero	INTERGENIC
SBS	Chr10	19738970	C-T	Hetero	INTERGENIC
SBS	Chr11	2235027	T-A	Homo	INTERGENIC
SBS	Chr11	3252864	A-G	Hetero	INTERGENIC
SBS	Chr11	3646867	A-G	Homo	INTERGENIC
SBS	Chr11	9698419	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	20735560	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	22208384	C-T	Hetero	INTERGENIC
SBS	Chr11	23790574	A-T	Homo	INTERGENIC
SBS	Chr11	23790575	A-T	Homo	INTERGENIC
SBS	Chr11	29304267	G-A	Hetero	INTERGENIC
SBS	Chr12	4370212	G-A	Hetero	INTERGENIC
SBS	Chr12	10381270	A-T	Hetero	INTRON
SBS	Chr12	12134175	G-A	Hetero	INTERGENIC
SBS	Chr12	16739691	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	533811	533812	1
Deletion	Chr8	1608766	1608775	9	OsKitaake08g020200
Deletion	Chr2	3713022	3713024	2
Deletion	Chr12	5047753	5047754	1
Deletion	Chr5	5848735	5848737	2
Deletion	Chr3	8124360	8124368	8	OsKitaake03g112600
Deletion	Chr3	10266529	10266531	2
Deletion	Chr6	10462001	10471000	8999	OsKitaake06g117900
Deletion	Chr3	10937964	10937967	3
Deletion	Chr4	12280403	12280406	3
Deletion	Chr12	15224992	15224993	1
Deletion	Chr11	15443795	15443796	1
Deletion	Chr4	18260312	18260314	2
Deletion	Chr7	20575326	20575328	2
Deletion	Chr10	21912572	21912575	3	OsKitaake10g176900
Deletion	Chr11	29001352	29001356	4
Deletion	Chr4	30895009	30895010	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3609135	3648994	OsKitaake11g049800
Inversion	Chr10	6115430	6710844	OsKitaake10g042500
Inversion	Chr4	16449357	17029234
Inversion	Chr4	16449373	17029232

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes