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Mutant Information

Mutant Name	FN2708-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2708-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17477535 T-C Hetero INTERGENIC
SBS Chr1 25041715 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g242500
SBS Chr1 33569009 C-T Hetero INTERGENIC
SBS Chr1 34654219 C-T Hetero INTERGENIC
SBS Chr1 44056547 A-T Homo INTERGENIC
SBS Chr2 18283927 C-T Hetero INTERGENIC
SBS Chr2 28978754 C-G Homo INTERGENIC
SBS Chr3 12350946 A-T Hetero INTERGENIC
SBS Chr3 15546159 C-T Hetero INTERGENIC
SBS Chr3 22219077 C-T Hetero INTERGENIC
SBS Chr3 29369576 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 35578317 A-C Hetero UTR_3_PRIME
SBS Chr4 5178 G-A Hetero INTERGENIC
SBS Chr4 1381745 G-A Hetero INTERGENIC
SBS Chr4 4077709 T-C Hetero INTERGENIC
SBS Chr4 6851184 C-T Hetero INTERGENIC
SBS Chr4 13070149 G-T Hetero INTERGENIC
SBS Chr4 14672131 T-A Hetero INTRON
SBS Chr4 16442463 T-A Hetero INTERGENIC
SBS Chr4 17730784 C-T Hetero INTERGENIC
SBS Chr5 1176636 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g015200
SBS Chr5 7209478 G-A Hetero INTERGENIC
SBS Chr5 11422789 G-T Hetero INTERGENIC
SBS Chr5 21745672 T-C Hetero INTERGENIC
SBS Chr6 10683316 C-T Hetero INTERGENIC
SBS Chr6 13313603 A-C Hetero INTERGENIC
SBS Chr6 16652213 T-A Hetero INTERGENIC
SBS Chr6 16652214 G-A Hetero INTERGENIC
SBS Chr6 19357631 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g174200
SBS Chr6 22297403 A-C Hetero INTERGENIC
SBS Chr7 7811309 C-T Homo INTERGENIC
SBS Chr7 11254764 T-A Hetero INTRON
SBS Chr7 16359170 A-T Hetero INTERGENIC
SBS Chr7 24251592 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g215900
SBS Chr8 10056517 G-T Hetero INTERGENIC
SBS Chr8 17699830 G-A Hetero INTERGENIC
SBS Chr9 1093429 G-T Hetero INTERGENIC
SBS Chr9 3132431 A-T Hetero INTERGENIC
SBS Chr9 4439241 T-C Hetero INTERGENIC
SBS Chr9 4489759 A-G Hetero INTERGENIC
SBS Chr9 12315253 T-A Hetero INTERGENIC
SBS Chr9 14811226 G-C Hetero INTERGENIC
SBS Chr10 4605086 A-G Hetero INTERGENIC
SBS Chr10 9040532 G-A Hetero INTERGENIC
SBS Chr10 9155730 A-G Hetero INTERGENIC
SBS Chr10 20733621 A-G Hetero INTERGENIC
SBS Chr11 2235027 T-A Homo INTERGENIC
SBS Chr11 3646867 A-G Homo INTERGENIC
SBS Chr11 9698419 A-C Hetero SYNONYMOUS_CODING
SBS Chr11 9793405 G-A Hetero INTRON
SBS Chr11 19897318 G-T Hetero INTRON
SBS Chr11 19897319 C-T Hetero INTRON
SBS Chr11 23790574 A-T Homo INTERGENIC
SBS Chr11 23790575 A-T Homo INTERGENIC
SBS Chr12 4370212 G-A Hetero INTERGENIC
SBS Chr12 10381270 A-T Hetero INTRON
SBS Chr12 12134175 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 533811 533812 1
Deletion Chr8 1608766 1608775 9 OsKitaake08g020200
Deletion Chr6 10462001 10471000 8999 OsKitaake06g117900
Deletion Chr7 13112496 13112497 1
Deletion Chr12 15224992 15224993 1
Deletion Chr11 15443795 15443796 1
Deletion Chr9 18831182 18831183 1
Deletion Chr6 20446365 20446368 3
Deletion Chr12 23807665 23807675 10
Deletion Chr8 25797329 25797336 7
Deletion Chr11 29001352 29001356 4
Deletion Chr4 30895009 30895010 1
Deletion Chr3 37416840 37416843 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1347318 1347321 2
Insertion Chr1 41559537 41559540 2
Insertion Chr2 1609839 1609842 2
Insertion Chr3 10784141 10784146 4
Insertion Chr4 21176512 21176515 2
Insertion Chr7 19536627 19536631 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3609135 3648994 OsKitaake11g049800
Inversion Chr10 6115430 6710844 OsKitaake10g042500
Inversion Chr4 16449357 17029234
Inversion Chr4 16449373 17029232

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 24021373 Chr3 24723443
Translocation Chr11 29117316 Chr3 24723111
Translocation Chr11 29118590 Chr4 24021262

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17477535	T-C	Hetero	INTERGENIC
SBS	Chr1	25041715	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g242500
SBS	Chr1	33569009	C-T	Hetero	INTERGENIC
SBS	Chr1	34654219	C-T	Hetero	INTERGENIC
SBS	Chr1	44056547	A-T	Homo	INTERGENIC
SBS	Chr2	18283927	C-T	Hetero	INTERGENIC
SBS	Chr2	28978754	C-G	Homo	INTERGENIC
SBS	Chr3	12350946	A-T	Hetero	INTERGENIC
SBS	Chr3	15546159	C-T	Hetero	INTERGENIC
SBS	Chr3	22219077	C-T	Hetero	INTERGENIC
SBS	Chr3	29369576	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	35578317	A-C	Hetero	UTR_3_PRIME
SBS	Chr4	5178	G-A	Hetero	INTERGENIC
SBS	Chr4	1381745	G-A	Hetero	INTERGENIC
SBS	Chr4	4077709	T-C	Hetero	INTERGENIC
SBS	Chr4	6851184	C-T	Hetero	INTERGENIC
SBS	Chr4	13070149	G-T	Hetero	INTERGENIC
SBS	Chr4	14672131	T-A	Hetero	INTRON
SBS	Chr4	16442463	T-A	Hetero	INTERGENIC
SBS	Chr4	17730784	C-T	Hetero	INTERGENIC
SBS	Chr5	1176636	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g015200
SBS	Chr5	7209478	G-A	Hetero	INTERGENIC
SBS	Chr5	11422789	G-T	Hetero	INTERGENIC
SBS	Chr5	21745672	T-C	Hetero	INTERGENIC
SBS	Chr6	10683316	C-T	Hetero	INTERGENIC
SBS	Chr6	13313603	A-C	Hetero	INTERGENIC
SBS	Chr6	16652213	T-A	Hetero	INTERGENIC
SBS	Chr6	16652214	G-A	Hetero	INTERGENIC
SBS	Chr6	19357631	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g174200
SBS	Chr6	22297403	A-C	Hetero	INTERGENIC
SBS	Chr7	7811309	C-T	Homo	INTERGENIC
SBS	Chr7	11254764	T-A	Hetero	INTRON
SBS	Chr7	16359170	A-T	Hetero	INTERGENIC
SBS	Chr7	24251592	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g215900
SBS	Chr8	10056517	G-T	Hetero	INTERGENIC
SBS	Chr8	17699830	G-A	Hetero	INTERGENIC
SBS	Chr9	1093429	G-T	Hetero	INTERGENIC
SBS	Chr9	3132431	A-T	Hetero	INTERGENIC
SBS	Chr9	4439241	T-C	Hetero	INTERGENIC
SBS	Chr9	4489759	A-G	Hetero	INTERGENIC
SBS	Chr9	12315253	T-A	Hetero	INTERGENIC
SBS	Chr9	14811226	G-C	Hetero	INTERGENIC
SBS	Chr10	4605086	A-G	Hetero	INTERGENIC
SBS	Chr10	9040532	G-A	Hetero	INTERGENIC
SBS	Chr10	9155730	A-G	Hetero	INTERGENIC
SBS	Chr10	20733621	A-G	Hetero	INTERGENIC
SBS	Chr11	2235027	T-A	Homo	INTERGENIC
SBS	Chr11	3646867	A-G	Homo	INTERGENIC
SBS	Chr11	9698419	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	9793405	G-A	Hetero	INTRON
SBS	Chr11	19897318	G-T	Hetero	INTRON
SBS	Chr11	19897319	C-T	Hetero	INTRON
SBS	Chr11	23790574	A-T	Homo	INTERGENIC
SBS	Chr11	23790575	A-T	Homo	INTERGENIC
SBS	Chr12	4370212	G-A	Hetero	INTERGENIC
SBS	Chr12	10381270	A-T	Hetero	INTRON
SBS	Chr12	12134175	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	533811	533812	1
Deletion	Chr8	1608766	1608775	9	OsKitaake08g020200
Deletion	Chr6	10462001	10471000	8999	OsKitaake06g117900
Deletion	Chr7	13112496	13112497	1
Deletion	Chr12	15224992	15224993	1
Deletion	Chr11	15443795	15443796	1
Deletion	Chr9	18831182	18831183	1
Deletion	Chr6	20446365	20446368	3
Deletion	Chr12	23807665	23807675	10
Deletion	Chr8	25797329	25797336	7
Deletion	Chr11	29001352	29001356	4
Deletion	Chr4	30895009	30895010	1
Deletion	Chr3	37416840	37416843	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3609135	3648994	OsKitaake11g049800
Inversion	Chr10	6115430	6710844	OsKitaake10g042500
Inversion	Chr4	16449357	17029234
Inversion	Chr4	16449373	17029232

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes